BP912789 |
Clone id |
YMU001_000022_H05 |
Library |
YMU01 |
Length |
527 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000022_H05. |
Accession |
BP912789 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TTTTTTTTTTTTTTTTCATAGGAGCAATAAAATTAAGGGGTATCAAATGACAGGTTGGTA CATTTTTCCCTTGCATGATGACGGGCGAAGTGTATGATGGCCTTCCTATTCGAAGGCCAA ATAAGGGAATTCCCTTTCCCTAGGAAGGACAAGGGCACCCTTCAATTTCTAGGCCTGGTC TCAAACAGCCCTACGCTCAGCTTCGCTGATGAAACATTCGTCCAGTACAATGTAGTCGAA AGCTTAACACAACAGTATCATAGAAGATACCAACTCCAAGTTTCACCAGGGCCTAGAACA ACCCTATGTTGTGCTTCGCTAATGAGCCATTCCTCCAGTACAACATAGTTGAAAGCTAAC AAAACATTTTCTTTGATATTTGCAAAAGCTACATACTTCTCCGTTCAAGAAGTCTCAAAA GAGTCAACCTTTGATTCTAAATATACACGGTCCGAACATCATTTGGTCCAAATACAGCTC CACATGCAGGGCATTTGCGGTGTCTTGAGTCTAGAGACTTCTGAACG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9C895 |
Definition |
sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana |
Align length |
27 |
Score (bit) |
45.8 |
E-value |
0.0001 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TJ88 |
Definition |
tr|A9TJ88|A9TJ88_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
29 |
Score (bit) |
55.5 |
E-value |
2.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912789|Adiantum capillus-veneris mRNA, clone: YMU001_000022_H05. (511 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TJ88|A9TJ88_PHYPA Predicted protein OS=Physcomitrella paten... 55 2e-06 tr|A9TET1|A9TET1_PHYPA Predicted protein OS=Physcomitrella paten... 50 8e-05 tr|A9RK65|A9RK65_PHYPA Predicted protein OS=Physcomitrella paten... 48 2e-04 tr|A9TZ49|A9TZ49_PHYPA Predicted protein (Fragment) OS=Physcomit... 48 3e-04 tr|A9S3Z1|A9S3Z1_PHYPA Predicted protein OS=Physcomitrella paten... 47 5e-04 tr|A7P033|A7P033_VITVI Chromosome chr6 scaffold_3, whole genome ... 47 7e-04 tr|A7PKF0|A7PKF0_VITVI Chromosome chr15 scaffold_19, whole genom... 46 0.001 tr|B3H5S6|B3H5S6_ARATH Uncharacterized protein At1g55255.2 OS=Ar... 46 0.001 tr|B6SHA4|B6SHA4_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.003 tr|B8BIA7|B8BIA7_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.010 tr|B7EV99|B7EV99_ORYSJ cDNA clone:J033149F01, full insert sequen... 43 0.010 tr|B8Q8A6|B8Q8A6_ORYSI SKIP interacting protein 20 OS=Oryza sati... 42 0.013 tr|B8ASX7|B8ASX7_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.013 tr|Q4RZA9|Q4RZA9_TETNG Chromosome 1 SCAF14944, whole genome shot... 38 0.25 tr|B5BV15|B5BV15_DRONO Ring finger protein 20 (Fragment) OS=Drom... 38 0.25 tr|A9JS25|A9JS25_XENLA LOC100127292 protein OS=Xenopus laevis GN... 38 0.25 tr|A2AIR3|A2AIR3_MOUSE Ring finger protein 20 OS=Mus musculus GN... 38 0.25 tr|A7APS2|A7APS2_BABBO Putative uncharacterized protein OS=Babes... 38 0.25 tr|A7MCT5|A7MCT5_HUMAN Ring finger protein 20 OS=Homo sapiens GN... 38 0.25 tr|Q7T178|Q7T178_DANRE Novel protein (Zgc:171713) (Fragment) OS=... 37 0.43 tr|Q4S4Q4|Q4S4Q4_TETNG Chromosome 2 SCAF14738, whole genome shot... 36 1.3 tr|Q24DT4|Q24DT4_TETTH Zinc finger protein OS=Tetrahymena thermo... 36 1.3 tr|B6PAW8|B6PAW8_BRAFL Putative uncharacterized protein OS=Branc... 36 1.3 tr|B6NEH4|B6NEH4_BRAFL Putative uncharacterized protein (Fragmen... 36 1.3 tr|Q0TVL4|Q0TVL4_PHANO Putative uncharacterized protein OS=Phaeo... 36 1.3 tr|B2VVV7|B2VVV7_PYRTR E3 ubiquitin-protein ligase bre1 OS=Pyren... 36 1.3 tr|Q5C1Y1|Q5C1Y1_SCHJA SJCHGC05730 protein (Fragment) OS=Schisto... 35 1.6 tr|A9BKD0|A9BKD0_9CRYP Putative uncharacterized protein OS=Crypt... 35 1.6 tr|A8QGA4|A8QGA4_BRUMA RING finger protein 20, putative (Fragmen... 35 1.6 tr|A4RG72|A4RG72_MAGGR Putative uncharacterized protein OS=Magna... 35 1.6
>tr|A9TJ88|A9TJ88_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_222810 PE=4 SV=1 Length = 844
Score = 55.5 bits (132), Expect = 2e-06 Identities = 23/29 (79%), Positives = 25/29 (86%) Frame = -2
Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424 +Q+SLDSRHRKCP CG FG NDVRTVYI Sbjct: 816 IQRSLDSRHRKCPGCGVPFGQNDVRTVYI 844
>tr|A9TET1|A9TET1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_144430 PE=4 SV=1 Length = 884
Score = 49.7 bits (117), Expect = 8e-05 Identities = 19/29 (65%), Positives = 25/29 (86%) Frame = -2
Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424 +Q++L+S+HRKCP CG FG NDVR+VYI Sbjct: 856 IQRNLESKHRKCPGCGIPFGQNDVRSVYI 884
>tr|A9RK65|A9RK65_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_115788 PE=4 SV=1 Length = 884
Score = 48.1 bits (113), Expect = 2e-04 Identities = 19/29 (65%), Positives = 23/29 (79%) Frame = -2
Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424 +Q++L+ RHRKCP CG FG NDVR VYI Sbjct: 856 IQRNLELRHRKCPGCGIPFGQNDVRVVYI 884
>tr|A9TZ49|A9TZ49_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_152947 PE=4 SV=1 Length = 852
Score = 47.8 bits (112), Expect = 3e-04 Identities = 19/29 (65%), Positives = 24/29 (82%) Frame = -2
Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424 +Q++L+ RHRKCPACG FG +DVR VYI Sbjct: 824 IQRNLELRHRKCPACGIPFGQSDVRNVYI 852
>tr|A9S3Z1|A9S3Z1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_208452 PE=4 SV=1 Length = 846
Score = 47.0 bits (110), Expect = 5e-04 Identities = 19/29 (65%), Positives = 24/29 (82%) Frame = -2
Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424 +Q++L+ RHRKCPACG FG +DVRTV I Sbjct: 818 IQRNLEIRHRKCPACGIAFGQSDVRTVSI 846
>tr|A7P033|A7P033_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024749001 PE=4 SV=1 Length = 1652
Score = 46.6 bits (109), Expect = 7e-04 Identities = 19/29 (65%), Positives = 23/29 (79%) Frame = -2
Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424 +Q++L+ RHRKCPACG FG NDVR V I Sbjct: 1624 IQRNLEIRHRKCPACGTAFGQNDVRFVKI 1652
>tr|A7PKF0|A7PKF0_VITVI Chromosome chr15 scaffold_19, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019139001 PE=4 SV=1 Length = 878
Score = 46.2 bits (108), Expect = 0.001 Identities = 18/29 (62%), Positives = 24/29 (82%) Frame = -2
Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424 VQ+ +++R+RKCP C A FGPNDV+ VYI Sbjct: 850 VQRIIEARNRKCPVCSASFGPNDVKPVYI 878
>tr|B3H5S6|B3H5S6_ARATH Uncharacterized protein At1g55255.2 OS=Arabidopsis thaliana GN=At1g55255 PE=4 SV=1 Length = 422
Score = 45.8 bits (107), Expect = 0.001 Identities = 18/27 (66%), Positives = 21/27 (77%) Frame = -2
Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTV 430 +Q+SL+ RHRKCP CG FG NDVR V Sbjct: 394 IQRSLEIRHRKCPGCGTAFGQNDVRLV 420
>tr|B6SHA4|B6SHA4_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 232
Score = 44.7 bits (104), Expect = 0.003 Identities = 18/29 (62%), Positives = 22/29 (75%) Frame = -2
Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424 +Q++L+ RHRKCP CG FG NDVR V I Sbjct: 204 IQRNLEIRHRKCPGCGTPFGQNDVREVKI 232
>tr|B8BIA7|B8BIA7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_34687 PE=4 SV=1 Length = 844
Score = 42.7 bits (99), Expect = 0.010 Identities = 17/29 (58%), Positives = 22/29 (75%) Frame = -2
Query: 510 VQKSLDSRHRKCPACGAVFGPNDVRTVYI 424 +Q++L+ RHRKCP CG FG +DVR V I Sbjct: 816 IQRNLEIRHRKCPGCGTPFGQSDVREVKI 844
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