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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912793
Clone id YMU001_000022_H10
Library
Length 333
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000022_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TACAGCGAAATTGGCAAACATGCTGGAGGGAGGTGGGAGAACACCCTTTTTGACTCCCAT
AGAATTGGAGGAATTGGGATTCAAAATTGTGGCGTACCCCTTATCACTTATTGGTGTATC
GATTGTAGCAATGCAGGATGCTTTACGTGCTTTAAAGAATGGCCGCATGCCACCTCCAGC
AGACCTCCCATCTTTTGCAGATATAAAAAAAGTTGTTGGTTTTGAGAAGTATTATGAGGA
AACGAGCAGATACTCAACTTCTTCAAGTCCAGATGAAAGGCAAGCTTCACAAAGTCCTGA
AGTTGATGTCGTTGTTCCATATGTGCTGGAAGA
■■Homology search results ■■ -
sp_hit_id O49290
Definition sp|O49290|CPPM_ARATH Putative carboxyvinyl-carboxyphosphonate phosphorylmutase OS=Arabidopsis thaliana
Align length 50
Score (bit) 45.4
E-value 9.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912793|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_H10.
         (333 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O49290|CPPM_ARATH Putative carboxyvinyl-carboxyphosphonate ph...    45   9e-05
sp|Q05957|PDP_DIACA Petal death protein OS=Dianthus caryophyllus...    43   6e-04
sp|P11435|CPPM_STRHY Carboxyvinyl-carboxyphosphonate phosphorylm...    40   0.003
sp|Q9YFM7|PRPB_AERPE Methylisocitrate lyase OS=Aeropyrum pernix ...    38   0.014
sp|Q8NSH8|PRPB1_CORGL Probable methylisocitrate lyase 1 OS=Coryn...    35   0.15 
sp|Q9Z9T7|PRPB_BACHD Methylisocitrate lyase OS=Bacillus halodura...    34   0.26 
sp|Q8NSL2|PRPB2_CORGL Probable methylisocitrate lyase 2 OS=Coryn...    33   0.34 
sp|Q9SZ44|FBL76_ARATH F-box/LRR-repeat protein At4g27050 OS=Arab...    33   0.58 
sp|P54528|PRPB_BACSU Methylisocitrate lyase OS=Bacillus subtilis...    32   0.76 
sp|B1LYI3|RS18_METRJ 30S ribosomal protein S18 OS=Methylobacteri...    29   6.4  
sp|Q8ZNY9|PRP1_SALTY Serine/threonine-protein phosphatase 1 OS=S...    29   6.4  
sp|Q9FRV4|CUC1_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidops...    29   8.4  

>sp|O49290|CPPM_ARATH Putative carboxyvinyl-carboxyphosphonate
           phosphorylmutase OS=Arabidopsis thaliana GN=At1g77060
           PE=2 SV=2
          Length = 339

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = +2

Query: 8   KLANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALK 157
           ++ NM+EGG  TP  TP EL+E+GF ++ +PL+ +  S  A+ D L+ LK
Sbjct: 245 RVCNMIEGGV-TPLHTPDELKEMGFHLIVHPLTALYASTRALVDVLKTLK 293


>sp|Q05957|PDP_DIACA Petal death protein OS=Dianthus caryophyllus
           GN=PDP PE=1 SV=1
          Length = 318

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
 Frame = +2

Query: 8   KLANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALK-NGRMPPPAD 184
           ++ANM+EGG +TP  TP E +E+GF ++A+ L+ +  +  A+ + ++ LK  G      D
Sbjct: 228 RIANMIEGG-KTPLHTPEEFKEMGFHLIAHSLTAVYATARALVNIMKILKEKGTTRDDLD 286

Query: 185 -LPSFADIKKVVGFE 226
            + +F++  +++  E
Sbjct: 287 QMATFSEFNELISLE 301


>sp|P11435|CPPM_STRHY Carboxyvinyl-carboxyphosphonate
           phosphorylmutase OS=Streptomyces hygroscopicus GN=bcpA
           PE=1 SV=3
          Length = 295

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +2

Query: 11  LANMLEGGGRTPFLTPIELEELGFKIVAYPLS 106
           LANM+EGG +TP+LT  ELE +G+ +  YPLS
Sbjct: 206 LANMVEGG-KTPWLTTKELESIGYNLAIYPLS 236


>sp|Q9YFM7|PRPB_AERPE Methylisocitrate lyase OS=Aeropyrum pernix
           GN=prpB PE=3 SV=2
          Length = 308

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 19/48 (39%), Positives = 30/48 (62%)
 Frame = +2

Query: 11  LANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRAL 154
           LANM E G +TP++T  +  E G+KIV +P++    S+ A +  LR +
Sbjct: 210 LANMTEFG-KTPYITVDQFREAGYKIVIFPVTTFRASLKASETVLREI 256


>sp|Q8NSH8|PRPB1_CORGL Probable methylisocitrate lyase 1
           OS=Corynebacterium glutamicum GN=prpB1 PE=3 SV=1
          Length = 305

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 18/49 (36%), Positives = 31/49 (63%)
 Frame = +2

Query: 11  LANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALK 157
           LANM E G +T  L+   LEE+G+  V YP++ + +++  ++ AL  +K
Sbjct: 214 LANMTEFG-KTTLLSADVLEEIGYNAVIYPVTTLRIAMGQVEQALAEIK 261


>sp|Q9Z9T7|PRPB_BACHD Methylisocitrate lyase OS=Bacillus halodurans
           GN=prpB PE=3 SV=1
          Length = 300

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +2

Query: 11  LANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALKN 160
           LANM E G +TP +T   L+  GF++V YP++ + V+  A +   + +K+
Sbjct: 212 LANMTEFG-KTPLMTAGGLQNAGFQMVIYPVTSLRVAAKAYERIFQLIKD 260


>sp|Q8NSL2|PRPB2_CORGL Probable methylisocitrate lyase 2
           OS=Corynebacterium glutamicum GN=prpB2 PE=3 SV=1
          Length = 307

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +2

Query: 11  LANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALKN 160
           LANM E G +T  L    LE++G+  V YP++L+ +++  ++ AL  + N
Sbjct: 214 LANMTEFG-KTELLPAQLLEDIGYNAVIYPVTLLRIAMGQVEQALGDIAN 262


>sp|Q9SZ44|FBL76_ARATH F-box/LRR-repeat protein At4g27050
           OS=Arabidopsis thaliana GN=At4g27050 PE=2 SV=1
          Length = 453

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 282 CLSSGLEEVEYLLVSS*YFSKPTTFFISAKDGRSAGGGMRPF 157
           CL   LE   YL + S YF+  T   ++  DG   GG + PF
Sbjct: 123 CLELNLEAANYLPIDSQYFTSNTLVKLTISDGFYPGGHLLPF 164


>sp|P54528|PRPB_BACSU Methylisocitrate lyase OS=Bacillus subtilis
           GN=prpB PE=3 SV=1
          Length = 301

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 11  LANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALK 157
           LANM E G +TP+    E E++GF +V YP++ +  +  A +     +K
Sbjct: 212 LANMTEFG-KTPYYRADEFEDMGFHMVIYPVTSLRAAAKACERMFGLMK 259


>sp|B1LYI3|RS18_METRJ 30S ribosomal protein S18 OS=Methylobacterium
           radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
           GN=rpsR PE=3 SV=1
          Length = 83

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 189 GRSAGGGMRPFFKARKASCIATIDTPISD 103
           G  AGGG RPFF+ RK    +  + P  D
Sbjct: 4   GAGAGGGRRPFFRRRKTCPFSGANAPKID 32
tr_hit_id A9TID5
Definition tr|A9TID5|A9TID5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 74
Score (bit) 115.0
E-value 8.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912793|Adiantum capillus-veneris mRNA, clone:
YMU001_000022_H10.
         (333 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TID5|A9TID5_PHYPA Predicted protein OS=Physcomitrella paten...   115   8e-25
tr|A2Q4X2|A2Q4X2_MEDTR Isocitrate lyase and phosphorylmutase OS=...   112   1e-23
tr|B7FLT4|B7FLT4_MEDTR Putative uncharacterized protein OS=Medic...   108   1e-22
tr|A7Q9R2|A7Q9R2_VITVI Chromosome chr5 scaffold_67, whole genome...   108   1e-22
tr|Q7X8I9|Q7X8I9_ORYSA OSJNBa0014K14.17 protein OS=Oryza sativa ...   107   3e-22
tr|Q7F8Y3|Q7F8Y3_ORYSJ Os04g0504600 protein OS=Oryza sativa subs...   107   3e-22
tr|A3AVD2|A3AVD2_ORYSJ Putative uncharacterized protein OS=Oryza...   107   3e-22
tr|B4F9T3|B4F9T3_MAIZE Putative uncharacterized protein OS=Zea m...   105   1e-21
tr|Q9ZW77|Q9ZW77_ARATH Putative carboxyphosphonoenolpyruvate mut...   101   2e-20
tr|Q8GYI4|Q8GYI4_ARATH Putative carboxyphosphonoenolpyruvate mut...   101   2e-20
tr|Q3EBH7|Q3EBH7_ARATH Uncharacterized protein At2g43180.2 OS=Ar...   101   2e-20
tr|Q3EBH6|Q3EBH6_ARATH Uncharacterized protein At2g43180.3 OS=Ar...   101   2e-20
tr|Q3E6R0|Q3E6R0_ARATH Uncharacterized protein At2g43180.4 OS=Ar...   101   2e-20
tr|Q7XLP7|Q7XLP7_ORYSJ Os04g0386600 protein OS=Oryza sativa subs...    98   2e-19
tr|A2XSR2|A2XSR2_ORYSI Putative uncharacterized protein OS=Oryza...    98   2e-19
tr|Q01L00|Q01L00_ORYSA OSIGBa0148P16.5 protein OS=Oryza sativa G...    97   3e-19
tr|A8J2R7|A8J2R7_CHLRE Predicted protein (Fragment) OS=Chlamydom...    94   3e-18
tr|A4RRU4|A4RRU4_OSTLU Predicted protein OS=Ostreococcus lucimar...    84   4e-15
tr|Q01FS8|Q01FS8_OSTTA Isocitrate lyase (ISS) OS=Ostreococcus ta...    83   6e-15
tr|B6YZ03|B6YZ03_9RHOB Carboxyvinyl-carboxyphosphonate phosphory...    70   4e-11
tr|B8ARC8|B8ARC8_ORYSI Putative uncharacterized protein OS=Oryza...    69   9e-11
tr|A2Q2U6|A2Q2U6_MEDTR Putative uncharacterized protein OS=Medic...    69   2e-10
tr|A9GVH3|A9GVH3_SORC5 Carboxyvinyl-carboxyphosphonate phosphory...    68   2e-10
tr|B8C5Y4|B8C5Y4_THAPS Predicted protein (Fragment) OS=Thalassio...    68   2e-10
tr|B7FT60|B7FT60_PHATR Predicted protein OS=Phaeodactylum tricor...    65   1e-09
tr|A5GRB7|A5GRB7_SYNR3 Putative carboxyvinyl-carboxyphosphonate ...    64   3e-09
tr|A4CY76|A4CY76_SYNPV Carboxyvinyl-carboxyphosphonate phosphory...    61   3e-08
tr|Q0I6Q6|Q0I6Q6_SYNS3 Carboxyvinyl-carboxyphosphonate phosphory...    56   1e-06
tr|A8LHN7|A8LHN7_DINSH Carboxyvinyl-carboxyphosphonate phosphory...    56   1e-06
tr|B8M444|B8M444_9EURO Carboxyvinyl-carboxyphosphonate phosphory...    55   2e-06

>tr|A9TID5|A9TID5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_146018 PE=4 SV=1
          Length = 426

 Score =  115 bits (289), Expect = 8e-25
 Identities = 54/74 (72%), Positives = 66/74 (89%)
 Frame = +2

Query: 8   KLANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALKNGRMPPPADL 187
           K+ANMLEGGG+TP L+P+ELE++GFKIVAYPLSL+GVSI AMQDAL ALK+GR+PPP+ L
Sbjct: 253 KMANMLEGGGKTPILSPLELEDIGFKIVAYPLSLVGVSIRAMQDALAALKSGRLPPPSLL 312

Query: 188 PSFADIKKVVGFEK 229
           PSF  +K +VGF K
Sbjct: 313 PSFETVKDIVGFPK 326


>tr|A2Q4X2|A2Q4X2_MEDTR Isocitrate lyase and phosphorylmutase
           OS=Medicago truncatula GN=MtrDRAFT_AC157893g9v2 PE=4
           SV=1
          Length = 478

 Score =  112 bits (279), Expect = 1e-23
 Identities = 51/72 (70%), Positives = 63/72 (87%)
 Frame = +2

Query: 8   KLANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALKNGRMPPPADL 187
           K+ANMLEGGG+TP LTP+ELE++G+KIVAYPLSLIGVSI AMQDAL A+K GR+PPP  +
Sbjct: 262 KMANMLEGGGKTPILTPLELEDIGYKIVAYPLSLIGVSIRAMQDALTAIKGGRIPPPGSM 321

Query: 188 PSFADIKKVVGF 223
           P+F +IK  +GF
Sbjct: 322 PTFEEIKDTLGF 333


>tr|B7FLT4|B7FLT4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 437

 Score =  108 bits (271), Expect = 1e-22
 Identities = 50/72 (69%), Positives = 62/72 (86%)
 Frame = +2

Query: 8   KLANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALKNGRMPPPADL 187
           K+ANMLEGGG+T  LTP+ELE++G+KIVAYPLSLIGVSI AMQDAL A+K GR+PPP  +
Sbjct: 262 KMANMLEGGGKTSILTPLELEDIGYKIVAYPLSLIGVSIRAMQDALTAIKGGRIPPPGSM 321

Query: 188 PSFADIKKVVGF 223
           P+F +IK  +GF
Sbjct: 322 PTFEEIKDTLGF 333


>tr|A7Q9R2|A7Q9R2_VITVI Chromosome chr5 scaffold_67, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033586001
           PE=4 SV=1
          Length = 505

 Score =  108 bits (271), Expect = 1e-22
 Identities = 50/72 (69%), Positives = 62/72 (86%)
 Frame = +2

Query: 8   KLANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALKNGRMPPPADL 187
           K+ANMLEGGG+TP L PIELE++G+KIV YPLSLIGVSI AMQDALRA+K GR+P P  +
Sbjct: 290 KMANMLEGGGKTPILNPIELEDVGYKIVVYPLSLIGVSIRAMQDALRAIKGGRIPSPGSM 349

Query: 188 PSFADIKKVVGF 223
           P+F +IK+ +GF
Sbjct: 350 PTFEEIKETLGF 361


>tr|Q7X8I9|Q7X8I9_ORYSA OSJNBa0014K14.17 protein OS=Oryza sativa
           GN=OSJNBa0014K14.17 PE=4 SV=3
          Length = 514

 Score =  107 bits (267), Expect = 3e-22
 Identities = 49/72 (68%), Positives = 62/72 (86%)
 Frame = +2

Query: 8   KLANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALKNGRMPPPADL 187
           K+ANMLEGGG+TP L+P ELEE G+K++AYPLSLIGVS+ AM+DAL A+K GR+PPP+ L
Sbjct: 284 KMANMLEGGGKTPILSPAELEETGYKLIAYPLSLIGVSMRAMEDALIAIKGGRIPPPSSL 343

Query: 188 PSFADIKKVVGF 223
           PSF +IK  +GF
Sbjct: 344 PSFEEIKDTLGF 355


>tr|Q7F8Y3|Q7F8Y3_ORYSJ Os04g0504600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0116K07.9 PE=4 SV=1
          Length = 503

 Score =  107 bits (267), Expect = 3e-22
 Identities = 49/72 (68%), Positives = 62/72 (86%)
 Frame = +2

Query: 8   KLANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALKNGRMPPPADL 187
           K+ANMLEGGG+TP L+P ELEE G+K++AYPLSLIGVS+ AM+DAL A+K GR+PPP+ L
Sbjct: 284 KMANMLEGGGKTPILSPAELEETGYKLIAYPLSLIGVSMRAMEDALIAIKGGRIPPPSSL 343

Query: 188 PSFADIKKVVGF 223
           PSF +IK  +GF
Sbjct: 344 PSFEEIKDTLGF 355


>tr|A3AVD2|A3AVD2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014754 PE=4 SV=1
          Length = 514

 Score =  107 bits (267), Expect = 3e-22
 Identities = 49/72 (68%), Positives = 62/72 (86%)
 Frame = +2

Query: 8   KLANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALKNGRMPPPADL 187
           K+ANMLEGGG+TP L+P ELEE G+K++AYPLSLIGVS+ AM+DAL A+K GR+PPP+ L
Sbjct: 284 KMANMLEGGGKTPILSPAELEETGYKLIAYPLSLIGVSMRAMEDALIAIKGGRIPPPSSL 343

Query: 188 PSFADIKKVVGF 223
           PSF +IK  +GF
Sbjct: 344 PSFEEIKDTLGF 355


>tr|B4F9T3|B4F9T3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 311

 Score =  105 bits (262), Expect = 1e-21
 Identities = 48/74 (64%), Positives = 63/74 (85%)
 Frame = +2

Query: 8   KLANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALKNGRMPPPADL 187
           K+ANMLEGGG+TP L+P ELEE+GF++V YPLSL+GVS+ AMQDAL A+K+G +PPP+ L
Sbjct: 226 KMANMLEGGGKTPILSPAELEEIGFRLVVYPLSLVGVSMRAMQDALVAIKDGGVPPPSVL 285

Query: 188 PSFADIKKVVGFEK 229
           PSF +IK  +GF +
Sbjct: 286 PSFQEIKDTLGFNR 299


>tr|Q9ZW77|Q9ZW77_ARATH Putative carboxyphosphonoenolpyruvate mutase
           OS=Arabidopsis thaliana GN=At2g43180 PE=4 SV=1
          Length = 492

 Score =  101 bits (252), Expect = 2e-20
 Identities = 46/73 (63%), Positives = 60/73 (82%)
 Frame = +2

Query: 8   KLANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALKNGRMPPPADL 187
           KLANMLE GG+ P L P+ELEE+G+K+VAYP+SLIGVSI AMQDAL A+K GR+PPP  +
Sbjct: 268 KLANMLESGGKIPILNPLELEEIGYKLVAYPISLIGVSIQAMQDALLAIKGGRIPPPGSM 327

Query: 188 PSFADIKKVVGFE 226
            S  +I +++GF+
Sbjct: 328 ASLEEIGEILGFD 340


>tr|Q8GYI4|Q8GYI4_ARATH Putative carboxyphosphonoenolpyruvate mutase
           OS=Arabidopsis thaliana GN=At2g43180 PE=2 SV=1
          Length = 479

 Score =  101 bits (252), Expect = 2e-20
 Identities = 46/73 (63%), Positives = 60/73 (82%)
 Frame = +2

Query: 8   KLANMLEGGGRTPFLTPIELEELGFKIVAYPLSLIGVSIVAMQDALRALKNGRMPPPADL 187
           KLANMLE GG+ P L P+ELEE+G+K+VAYP+SLIGVSI AMQDAL A+K GR+PPP  +
Sbjct: 273 KLANMLESGGKIPILNPLELEEIGYKLVAYPISLIGVSIQAMQDALLAIKGGRIPPPGSM 332

Query: 188 PSFADIKKVVGFE 226
            S  +I +++GF+
Sbjct: 333 ASLEEIGEILGFD 345