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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912795
Clone id YMU001_000023_A01
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTGTTTTTTTAACCCGGTAATTATGATCTATCATAACATATTTGACAAAA
TTTGCATCTGCACTGTGTACTTACAGCAAGGAAGAAGGTACATCATGCCATCCCAAGACT
CCACCTACCCAATTAAAAAAAACTGTGTGCCAATAGCTAACCACACAAAAAACGAGCTTT
TTGCAGCTATCTCATCTCCCACCAAATATCCTTCCAAAAATTGTTCGTAGCTGATTATAT
GAGACAATTTTGCTGAGACAGCAGAGCGCTGCACCAAGTAATGTTTCAGCTGAGCAAATT
CTTCGAGAGCACTGATCAACTTTTGGTGTAAGGACGGTAATCCGGAGACCTACTCCGATA
CCTCCTTGGAGACGAACGACTCTGATATCGGTCATAAACAGGACTGCCTCTCCTGTATGT
CGGGCTACGTCTGCCTCTGTAGCTCCCCCTTGGTCCAGGACTTCTCCTACCAGACCTCCT
TTCGGAAGGCTCACCATTCTCCCTTACAGCATATTCAACA
■■Homology search results ■■ -
sp_hit_id Q01705
Definition sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 OS=Mus musculus
Align length 62
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912795|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_A01.
         (500 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 O...    32   1.3  
sp|Q04592|PCSK5_MOUSE Proprotein convertase subtilisin/kexin typ...    32   1.6  
sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1 OS=...    30   4.8  
sp|Q2IJK7|LEU3_ANADE 3-isopropylmalate dehydrogenase OS=Anaeromy...    30   8.2  
sp|O49564|CRK27_ARATH Cysteine-rich receptor-like protein kinase...    30   8.2  

>sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1
           OS=Mus musculus GN=Notch1 PE=1 SV=2
          Length = 2531

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +1

Query: 307 CKDGNPETYSDTSLETNDSDIGHKQDCLSCMSGYVCLCSSPLVQDFSYQTSFRKAHHSPL 486
           C +G   T+ +  ++  D D  H   C   ++ + CLC  P       +T+  + H  P 
Sbjct: 554 CTEGYTGTHCEVDIDECDPDPCHYGSCKDGVATFTCLC-QPGYTGHHCETNINECHSQPC 612

Query: 487 QH 492
           +H
Sbjct: 613 RH 614


>sp|Q04592|PCSK5_MOUSE Proprotein convertase subtilisin/kexin type 5
            OS=Mus musculus GN=Pcsk5 PE=1 SV=2
          Length = 1877

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 274  ANSSRALINFWCKDGNPE-TYSDTSLETNDSDIGHKQDCLSCMSGYVCL 417
            A++S+AL N  C D  PE TY +   E ND      + CL C S + CL
Sbjct: 1417 ADTSKALHNGLCLDECPEGTYKE---EENDECRDCPESCLICSSAWTCL 1462


>sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1
           OS=Rattus norvegicus GN=Notch1 PE=1 SV=2
          Length = 2531

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +1

Query: 307 CKDGNPETYSDTSLETNDSDIGHKQDCLSCMSGYVCLCSSPLVQDFSYQTSFRKAHHSPL 486
           C +G   T+ +  ++  D D  H   C   ++ + CLC  P       +T+  + H  P 
Sbjct: 554 CTEGYTGTHCEVDIDECDPDPCHIGLCKDGVATFTCLC-QPGYTGHHCETNINECHSQPC 612

Query: 487 QH 492
           +H
Sbjct: 613 RH 614


>sp|Q2IJK7|LEU3_ANADE 3-isopropylmalate dehydrogenase
           OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=leuB
           PE=3 SV=1
          Length = 353

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -3

Query: 480 RMVSLPKGGLVGEVLDQGGATEADVARHTGEAVLFMTDIRVVRLQGGIGVGLRITVLTPK 301
           ++V LP  G+  EV  +       VAR  G A+ F       RL GG  +    T LTP+
Sbjct: 4   KIVVLPGDGIGPEVTAEAVRVLEAVARRGGHALSFTE-----RLMGGCSIDAHGTALTPE 58

Query: 300 V 298
           V
Sbjct: 59  V 59


>sp|O49564|CRK27_ARATH Cysteine-rich receptor-like protein kinase 27
           OS=Arabidopsis thaliana GN=CRK27 PE=2 SV=2
          Length = 642

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -3

Query: 450 VGEVLDQGGATEADVARHTGEAVLFMTDIRVVRLQGGI-GVGLRITVLTPKVDQCSRRIC 274
           +G++LD  GA + D A  T E          V+   G+ G    +   TP + +   RIC
Sbjct: 158 LGDLLDSLGA-KIDAANETKE----------VKFAAGVKGTIYALAQCTPDLSESDCRIC 206

Query: 273 SAETLLGAALCCLSK 229
            A+   G   CC  K
Sbjct: 207 LAQIFAGVPTCCDGK 221
tr_hit_id A3WEF5
Definition tr|A3WEF5|A3WEF5_9SPHN Acyl-CoA dehydrogenase OS=Erythrobacter sp. NAP1
Align length 82
Score (bit) 34.7
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912795|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_A01.
         (500 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3WEF5|A3WEF5_9SPHN Acyl-CoA dehydrogenase OS=Erythrobacter s...    35   2.6  
tr|Q2RSZ7|Q2RSZ7_RHORT Isovaleryl-CoA dehydrogenase OS=Rhodospir...    33   5.7  
tr|B3PCJ3|B3PCJ3_CELJU Putative lipoprotein OS=Cellvibrio japoni...    33   5.7  
tr|B4VQ27|B4VQ27_9CYAN Putative uncharacterized protein OS=Micro...    33   5.7  
tr|Q3EYN9|Q3EYN9_BACTI Putative uncharacterized protein OS=Bacil...    33   7.4  
tr|B3RTL5|B3RTL5_TRIAD Putative uncharacterized protein OS=Trich...    33   7.4  

>tr|A3WEF5|A3WEF5_9SPHN Acyl-CoA dehydrogenase OS=Erythrobacter sp.
           NAP1 GN=NAP1_10378 PE=4 SV=1
          Length = 381

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = -3

Query: 426 GATEADVARHTGE-AVLFMTDIRVV--RLQGGIGVGLRITVLTPKVDQCSRRICSAETLL 256
           GA E  +  H+   A L + D+RV    L GG G G RI ++     + +   CS    L
Sbjct: 196 GANEKKLGWHSQPTAQLILEDVRVPVENLVGGEGEGFRIAMMGLDGGRLNIGACS----L 251

Query: 255 GAALCCLSKIVSYNQLRTIFGR 190
           G A  CL + V Y + R+ FG+
Sbjct: 252 GGAQRCLDEAVRYTKERSQFGK 273


>tr|Q2RSZ7|Q2RSZ7_RHORT Isovaleryl-CoA dehydrogenase
           OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
           GN=Rru_A1948 PE=4 SV=1
          Length = 387

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 29/94 (30%), Positives = 42/94 (44%)
 Frame = -3

Query: 462 KGGLVGEVLDQGGATEADVARHTGEAVLFMTDIRVVRLQGGIGVGLRITVLTPKVDQCSR 283
           KG   G  LD+ G   ++    TGE V    ++    + GG+G G++  VL   +D    
Sbjct: 196 KGFTTGPKLDKLGMRGSN----TGELVFEDCEVPAENVLGGVGEGVK--VLMSGLDY--E 247

Query: 282 RICSAETLLGAALCCLSKIVSYNQLRTIFGRIFG 181
           R+  A   LG    CL  ++ Y   R  FGR  G
Sbjct: 248 RLVLAGGPLGIMEACLDAVLPYVHERQQFGRAIG 281


>tr|B3PCJ3|B3PCJ3_CELJU Putative lipoprotein OS=Cellvibrio japonicus
           (strain Ueda107) GN=CJA_2902 PE=4 SV=1
          Length = 782

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 24/78 (30%), Positives = 34/78 (43%)
 Frame = -3

Query: 438 LDQGGATEADVARHTGEAVLFMTDIRVVRLQGGIGVGLRITVLTPKVDQCSRRICSAETL 259
           LD G     D A   G   L   D++VV L GG    LRI  + P   +    +   + +
Sbjct: 122 LDTGTNDALDPANVVGIKALANFDVQVVSLDGGSNNTLRIRPIKPLAAKSKYLVIVTDDV 181

Query: 258 LGAALCCLSKIVSYNQLR 205
             A+   L++  SYN LR
Sbjct: 182 KDASGSALTRSWSYNALR 199


>tr|B4VQ27|B4VQ27_9CYAN Putative uncharacterized protein
           OS=Microcoleus chthonoplastes PCC 7420 GN=MC7420_5472
           PE=4 SV=1
          Length = 277

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -1

Query: 317 PSLHQKLISALEEFAQLKHYLVQRSAVSAKL---SHIISYEQFLEGYLVGDEIAAKSSFF 147
           P LHQK  + ++ +  L HY+     +  K+   S IIS+  FL+ +L+   + A + F 
Sbjct: 137 PRLHQKSKNLIKSWRTLNHYIWHNKIIFGKIILTSLIISFLNFLQIWLLIIALNAWTPFL 196

Query: 146 VWLAIGTQFFLIG 108
           + LA+     L G
Sbjct: 197 ISLALTPLAILAG 209


>tr|Q3EYN9|Q3EYN9_BACTI Putative uncharacterized protein OS=Bacillus
           thuringiensis serovar israelensis ATCC 35646
           GN=RBTH_07477 PE=4 SV=1
          Length = 341

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 67  QGRRYIMPSQDSTYPIKKNCVPIANHTKNELFAAISSPTK 186
           +GR+ + P  D+TYP KKN V I  +T N + A I    K
Sbjct: 45  KGRKIVQPYNDNTYPYKKN-VNINENTYNSMLAKIDKVYK 83


>tr|B3RTL5|B3RTL5_TRIAD Putative uncharacterized protein OS=Trichoplax
            adhaerens GN=TRIADDRAFT_55968 PE=4 SV=1
          Length = 7710

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 295  INFWCKDGNPETYSDT---SLETNDSDIGHKQDCLSCMSGYVC 414
            + ++C +G   +Y +       +N + I  K +CLSC  GY C
Sbjct: 4154 VGYYCPEGTKSSYENACPAGTYSNKTSIKTKHECLSCTPGYYC 4196