BP912799 |
Clone id |
YMU001_000023_A05 |
Library |
YMU01 |
Length |
580 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000023_A05. |
Accession |
BP912799 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ACCTGCAGGTACTCGACTTTTAAGGTTTTCTTGAGGGACACATGTCGAACAATTAGAAAT GAATGACCTTCATCCATATGGATACTAAGGCCTTTANTAGCCCAAAAAAACTTGAGCATG AGAACATCGCACATATGAGGTACTATCTCAACACATTGATGGCAACAACAACATAAAGAG AAAGCGATGCACCGACACGCTGGAAAAACCCCAACAAGAGGCTTATGCAAATTCCATAAT CGATTTCTACGCTCTCAAATCCAAGGCAGGGGGTGAGCAAGCGATATGCATTGGAGGCAG CCAGTGCATGAAACCAAAGACATAGCCCAGGCAAACAAAATACCAATCCTGCAAACCATC ATCTCAAGCAAAGCAAATGCCTCAACAGGTGTAAAGAGTTGACTGATAGCGATCCATATT GGTTGATGATGCATTCCCAAATTCCACCCTCAAAAAGCCGCGCGAAAAGAAAGAAACTGA AACTAGCCGGGCGATAGACTTTAGCTTTCACCCAATCTTTACACTGTTAATCCTTACGAC ACAAAGAAACTTCACGAAAAAGCCTGTGACTGGAAATTAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46136 |
Definition |
sp|P46136|YDDG_ECOLI Inner membrane protein yddG OS=Escherichia coli (strain K12) |
Align length |
58 |
Score (bit) |
33.5 |
E-value |
0.79 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912799|Adiantum capillus-veneris mRNA, clone: YMU001_000023_A05. (580 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P46136|YDDG_ECOLI Inner membrane protein yddG OS=Escherichia ... 33 0.79 sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein ... 32 2.3 sp|Q7EYH7|NIP32_ORYSJ Aquaporin NIP3-2 OS=Oryza sativa subsp. ja... 31 3.9 sp|Q9WVG9|MS3L1_MOUSE Male-specific lethal 3 homolog OS=Mus musc... 31 3.9 sp|Q8PXD4|Y1287_METMA UPF0313 protein MM_1287 OS=Methanosarcina ... 31 5.1 sp|P96119|TROD_TREPA Zinc transport system membrane protein troD... 31 5.1 sp|Q9QYY8|SPAST_MOUSE Spastin OS=Mus musculus GN=Spast PE=2 SV=2 31 5.1 sp|Q8IZU0|FAM9B_HUMAN Protein FAM9B OS=Homo sapiens GN=FAM9B PE=... 30 6.7 sp|A4IIK1|MFHA1_XENTR Malignant fibrous histiocytoma-amplified s... 30 8.7 sp|Q5R6Y9|MS3L1_PONAB Male-specific lethal 3 homolog OS=Pongo ab... 30 8.7 sp|Q8N5Y2|MS3L1_HUMAN Male-specific lethal 3 homolog OS=Homo sap... 30 8.7 sp|Q795Y4|FDHL_BACSU Putative formate dehydrogenase yrhE OS=Baci... 30 8.7
>sp|P46136|YDDG_ECOLI Inner membrane protein yddG OS=Escherichia coli (strain K12) GN=yddG PE=1 SV=3 Length = 293
Score = 33.5 bits (75), Expect = 0.79 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -3
Query: 458 AF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGCLQC 288 A+ WN+G+ H + I A+ FTPV + AL +++ W +L+ C G L C Sbjct: 229 AYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLC 286
>sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 OS=Mus musculus GN=Srrm2 PE=1 SV=2 Length = 2703
Score = 32.0 bits (71), Expect = 2.3 Identities = 22/68 (32%), Positives = 36/68 (52%) Frame = +2
Query: 170 NIKRKRCTDTLEKPQQEAYANSIIDFYALKSKAGGEQAICIGGSQCMKPKT*PRQTKYQS 349 N++ CT T PQ+++++ S D +KS+ Q+ C G S +K T PRQ+ +S Sbjct: 832 NMQADECTAT---PQRQSHSESSPDG-EVKSRTPSRQS-CSGSSPRVKSSTPPRQSPSRS 886
Query: 350 CKPSSQAK 373 P + K Sbjct: 887 SSPQPKVK 894
>sp|Q7EYH7|NIP32_ORYSJ Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1 Length = 305
Score = 31.2 bits (69), Expect = 3.9 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%) Frame = +3
Query: 243 ISTLSNPRQGVSKRYALE----AASA*NQRHSPGKQNTNPANHHL 365 I+ + +PR G SK E AA+A +QRH+ ++T A+HHL Sbjct: 34 IAIIISPRAGSSKILPFELVNGAANAGSQRHADPAESTPEAHHHL 78
>sp|Q9WVG9|MS3L1_MOUSE Male-specific lethal 3 homolog OS=Mus musculus GN=Msl3 PE=2 SV=3 Length = 525
Score = 31.2 bits (69), Expect = 3.9 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Frame = +3
Query: 207 NPNKRLMQIP*SISTLSNPRQGVSKRYALEAASA*NQR--HSPGKQNTNPANHHLKQSKC 380 N KRL+++P + ++ V K +A+ AA + N+R H +T+ H++ K Sbjct: 196 NRRKRLVKLPCQTNIITILESYV-KHFAINAAFSANERPRHHHAMMHTHMNVHYVPAEKN 254
Query: 381 LNRCKELTD 407 ++ CKE+ D Sbjct: 255 VDLCKEMVD 263
>sp|Q8PXD4|Y1287_METMA UPF0313 protein MM_1287 OS=Methanosarcina mazei GN=MM_1287 PE=3 SV=1 Length = 626
Score = 30.8 bits (68), Expect = 5.1 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Frame = +2
Query: 137 EVLSQHIDGNNNIKRK----RCTDTLEKPQQEAYANSIIDFYALKSKAGGEQAI 286 E+ + HI G I + R TD + KP +E Y F A K G EQ I Sbjct: 457 ELCAHHISGQLRIAPEHFSGRVTDAMSKPGKEVYEKFADRFNAFNKKCGKEQYI 510
>sp|P96119|TROD_TREPA Zinc transport system membrane protein troD OS=Treponema pallidum GN=troD PE=3 SV=1 Length = 367
Score = 30.8 bits (68), Expect = 5.1 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 15/103 (14%) Frame = -1
Query: 349 GLVFC--LPGLCLWFHALAASNAYRLLTPCLGFESVEIDYGICISL---LLGFFQRVGAS 185 G V C L L L+F L S +L LGF I+YG+ +++ +G F VGA Sbjct: 145 GSVLCGLLLLLALFFKELKISTFDPVLATSLGFSPTLINYGLMLAVSITCVGAFDSVGAV 204
Query: 184 LSLYVVV---------AINVLR*YLICAMF-SCSSFFGLXKAL 86 L + +++ N+L ++ ++ SC+S GL A+ Sbjct: 205 LVIALMITPPAAALLLTDNLLLMLVLASLLASCASISGLFLAV 247
>sp|Q9QYY8|SPAST_MOUSE Spastin OS=Mus musculus GN=Spast PE=2 SV=2 Length = 614
Score = 30.8 bits (68), Expect = 5.1 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -3
Query: 386 VEAFALLEMMVCRIGILFAW 327 V FALL ++ C +G+LFAW Sbjct: 56 VVGFALLRLLACHLGLLFAW 75
>sp|Q8IZU0|FAM9B_HUMAN Protein FAM9B OS=Homo sapiens GN=FAM9B PE=2 SV=1 Length = 186
Score = 30.4 bits (67), Expect = 6.7 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +1
Query: 193 RHAGKTPTRGLCKFHNRFLRSQIQGRG*ASDMHW-RQPVHETKDIAQAN 336 +HAGK P R C+ NRF ++ + +D H R+P ET + AN Sbjct: 7 KHAGKDPVRDECEERNRFTETREED---VTDEHGEREPFAETDEHTGAN 52
>sp|A4IIK1|MFHA1_XENTR Malignant fibrous histiocytoma-amplified sequence 1 homolog OS=Xenopus tropicalis GN=mfhas1 PE=2 SV=1 Length = 997
Score = 30.0 bits (66), Expect = 8.7 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 19/80 (23%) Frame = -1
Query: 349 GLVFC--------LPGLCLWF-----------HALAASNAYRLLTPCLGFESVEIDYGIC 227 GL +C L G +W+ HA A N + PCL E ++I+Y Sbjct: 783 GLCYCINKPKNKLLNGATVWYKFPCYVKNEAPHAEAWINGTNISEPCLAVEQLQIEYSFP 842
Query: 226 ISLLLGFFQRVGASLSLYVV 167 G F R ++ ++V Sbjct: 843 FIFPPGLFARFSVQINSHIV 862
>sp|Q5R6Y9|MS3L1_PONAB Male-specific lethal 3 homolog OS=Pongo abelii GN=MSL3 PE=2 SV=1 Length = 521
Score = 30.0 bits (66), Expect = 8.7 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = +3
Query: 207 NPNKRLMQIP*SISTLSNPRQGVSKRYALEAASA*NQR--HSPGKQNTNPANHHLKQSKC 380 N KRL+++P + ++ V K +A+ AA + N+R H + N H++ K Sbjct: 192 NRRKRLVKLPCQTNIITILESYV-KHFAINAAFSANERPRHHHVMPHANMNVHYIPAEKN 250
Query: 381 LNRCKELTD 407 ++ CKE+ D Sbjct: 251 VDLCKEMVD 259
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B4D7K1 |
Definition |
tr|B4D7K1|B4D7K1_9BACT Molybdopterin oxidoreductase OS=Chthoniobacter flavus Ellin428 |
Align length |
66 |
Score (bit) |
34.7 |
E-value |
3.9 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912799|Adiantum capillus-veneris mRNA, clone: YMU001_000023_A05. (580 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B4D7K1|B4D7K1_9BACT Molybdopterin oxidoreductase OS=Chthoniob... 35 3.9 tr|Q8ZPE4|Q8ZPE4_SALTY Putative permease OS=Salmonella typhimuri... 34 5.1 tr|Q5PHX9|Q5PHX9_SALPA Putative permease OS=Salmonella paratyphi... 34 5.1 tr|Q57P84|Q57P84_SALCH Putative permease OS=Salmonella choleraes... 34 5.1 tr|Q32G24|Q32G24_SHIDS Putative uncharacterized protein yddG OS=... 34 5.1 tr|B5RAA9|B5RAA9_SALG2 Putative integral membrane protein OS=Sal... 34 5.1 tr|B5QTN1|B5QTN1_SALEP Putative integral membrane protein OS=Sal... 34 5.1 tr|B5FHJ2|B5FHJ2_SALDC Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B5F5W1|B5F5W1_SALA4 Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B5BJD7|B5BJD7_SALPK Putative permease OS=Salmonella paratyphi... 34 5.1 tr|B4TW19|B4TW19_SALSV Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B4TIJ2|B4TIJ2_SALHS Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B4T5W0|B4T5W0_SALNS Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|A9MYU1|A9MYU1_SALPB Putative uncharacterized protein OS=Salmo... 34 5.1 tr|A9MR01|A9MR01_SALAR Putative uncharacterized protein OS=Salmo... 34 5.1 tr|B5QBR2|B5QBR2_SALVI Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B5PPW8|B5PPW8_SALHA Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B5PE32|B5PE32_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B5P022|B5P022_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B5NLC7|B5NLC7_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B5NB60|B5NB60_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B5N225|B5N225_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B5MJD6|B5MJD6_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B5CAQ0|B5CAQ0_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B5C0Y0|B5C0Y0_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B3ZZX2|B3ZZX2_SALNE Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|B3YCG0|B3YCG0_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1 tr|Q8XAS1|Q8XAS1_ECO57 Putative uncharacterized protein yddG (Pu... 33 8.7 tr|Q8FHH9|Q8FHH9_ECOL6 Putative uncharacterized protein yddG OS=... 33 8.7 tr|Q83KV3|Q83KV3_SHIFL Putative uncharacterized protein yddG OS=... 33 8.7
>tr|B4D7K1|B4D7K1_9BACT Molybdopterin oxidoreductase OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_4916 PE=4 SV=1 Length = 1259
Score = 34.7 bits (78), Expect = 3.9 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = -3
Query: 344 GILFAWAMSLVSCTGCLQCISLAHPLPWI*ERRNRLWNLHKPLVGVFPACRCIAFSLCCC 165 G +A+A+ L +CTGC C+S H L + E + +W L G ++ Sbjct: 63 GQQYAFAVDLDACTGCKACVSACHSLNGLEE--HEMWRSVGLLHG-----ESYRQTVTTA 115
Query: 164 CHQCVE 147 CH CVE Sbjct: 116 CHHCVE 121
>tr|Q8ZPE4|Q8ZPE4_SALTY Putative permease OS=Salmonella typhimurium GN=yddG PE=4 SV=1 Length = 274
Score = 34.3 bits (77), Expect = 5.1 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -3
Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297 L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G Sbjct: 205 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 264
Query: 296 LQC 288 L C Sbjct: 265 LLC 267
>tr|Q5PHX9|Q5PHX9_SALPA Putative permease OS=Salmonella paratyphi A GN=yddG PE=4 SV=1 Length = 274
Score = 34.3 bits (77), Expect = 5.1 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -3
Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297 L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G Sbjct: 205 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 264
Query: 296 LQC 288 L C Sbjct: 265 LLC 267
>tr|Q57P84|Q57P84_SALCH Putative permease OS=Salmonella choleraesuis GN=yddG PE=4 SV=1 Length = 255
Score = 34.3 bits (77), Expect = 5.1 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -3
Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297 L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G Sbjct: 186 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 245
Query: 296 LQC 288 L C Sbjct: 246 LLC 248
>tr|Q32G24|Q32G24_SHIDS Putative uncharacterized protein yddG OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yddG PE=4 SV=1 Length = 293
Score = 34.3 bits (77), Expect = 5.1 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -3
Query: 458 AF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGCLQC 288 A+ WN+G+ H + I A+ FTPV + AL +++ W +L+ C G L C Sbjct: 229 AYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQSALMVCGGSLLC 286
>tr|B5RAA9|B5RAA9_SALG2 Putative integral membrane protein OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yddG PE=4 SV=1 Length = 274
Score = 34.3 bits (77), Expect = 5.1 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -3
Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297 L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G Sbjct: 205 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 264
Query: 296 LQC 288 L C Sbjct: 265 LLC 267
>tr|B5QTN1|B5QTN1_SALEP Putative integral membrane protein OS=Salmonella enteritidis PT4 (strain P125109) GN=yddG PE=4 SV=1 Length = 274
Score = 34.3 bits (77), Expect = 5.1 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -3
Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297 L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G Sbjct: 205 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 264
Query: 296 LQC 288 L C Sbjct: 265 LLC 267
>tr|B5FHJ2|B5FHJ2_SALDC Inner membrane protein YddG OS=Salmonella dublin (strain CT_02021853) GN=SeD_A1771 PE=4 SV=1 Length = 307
Score = 34.3 bits (77), Expect = 5.1 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -3
Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297 L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G Sbjct: 238 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 297
Query: 296 LQC 288 L C Sbjct: 298 LLC 300
>tr|B5F5W1|B5F5W1_SALA4 Inner membrane protein YddG OS=Salmonella agona (strain SL483) GN=SeAg_B1593 PE=4 SV=1 Length = 307
Score = 34.3 bits (77), Expect = 5.1 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -3
Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297 L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G Sbjct: 238 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 297
Query: 296 LQC 288 L C Sbjct: 298 LLC 300
>tr|B5BJD7|B5BJD7_SALPK Putative permease OS=Salmonella paratyphi A (strain AKU_12601) GN=SSPA1205 PE=4 SV=1 Length = 274
Score = 34.3 bits (77), Expect = 5.1 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -3
Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297 L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G Sbjct: 205 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 264
Query: 296 LQC 288 L C Sbjct: 265 LLC 267
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