BP912799
Clone id YMU001_000023_A05
Library
Length 580
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACCTGCAGGTACTCGACTTTTAAGGTTTTCTTGAGGGACACATGTCGAACAATTAGAAAT
GAATGACCTTCATCCATATGGATACTAAGGCCTTTANTAGCCCAAAAAAACTTGAGCATG
AGAACATCGCACATATGAGGTACTATCTCAACACATTGATGGCAACAACAACATAAAGAG
AAAGCGATGCACCGACACGCTGGAAAAACCCCAACAAGAGGCTTATGCAAATTCCATAAT
CGATTTCTACGCTCTCAAATCCAAGGCAGGGGGTGAGCAAGCGATATGCATTGGAGGCAG
CCAGTGCATGAAACCAAAGACATAGCCCAGGCAAACAAAATACCAATCCTGCAAACCATC
ATCTCAAGCAAAGCAAATGCCTCAACAGGTGTAAAGAGTTGACTGATAGCGATCCATATT
GGTTGATGATGCATTCCCAAATTCCACCCTCAAAAAGCCGCGCGAAAAGAAAGAAACTGA
AACTAGCCGGGCGATAGACTTTAGCTTTCACCCAATCTTTACACTGTTAATCCTTACGAC
ACAAAGAAACTTCACGAAAAAGCCTGTGACTGGAAATTAC
■■Homology search results ■■ -
sp_hit_id P46136
Definition sp|P46136|YDDG_ECOLI Inner membrane protein yddG OS=Escherichia coli (strain K12)
Align length 58
Score (bit) 33.5
E-value 0.79
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912799|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_A05.
(580 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P46136|YDDG_ECOLI Inner membrane protein yddG OS=Escherichia ... 33 0.79
sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein ... 32 2.3
sp|Q7EYH7|NIP32_ORYSJ Aquaporin NIP3-2 OS=Oryza sativa subsp. ja... 31 3.9
sp|Q9WVG9|MS3L1_MOUSE Male-specific lethal 3 homolog OS=Mus musc... 31 3.9
sp|Q8PXD4|Y1287_METMA UPF0313 protein MM_1287 OS=Methanosarcina ... 31 5.1
sp|P96119|TROD_TREPA Zinc transport system membrane protein troD... 31 5.1
sp|Q9QYY8|SPAST_MOUSE Spastin OS=Mus musculus GN=Spast PE=2 SV=2 31 5.1
sp|Q8IZU0|FAM9B_HUMAN Protein FAM9B OS=Homo sapiens GN=FAM9B PE=... 30 6.7
sp|A4IIK1|MFHA1_XENTR Malignant fibrous histiocytoma-amplified s... 30 8.7
sp|Q5R6Y9|MS3L1_PONAB Male-specific lethal 3 homolog OS=Pongo ab... 30 8.7
sp|Q8N5Y2|MS3L1_HUMAN Male-specific lethal 3 homolog OS=Homo sap... 30 8.7
sp|Q795Y4|FDHL_BACSU Putative formate dehydrogenase yrhE OS=Baci... 30 8.7

>sp|P46136|YDDG_ECOLI Inner membrane protein yddG OS=Escherichia
coli (strain K12) GN=yddG PE=1 SV=3
Length = 293

Score = 33.5 bits (75), Expect = 0.79
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -3

Query: 458 AF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGCLQC 288
A+ WN+G+ H + I A+ FTPV + AL +++ W +L+ C G L C
Sbjct: 229 AYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGALMVCGGSLLC 286


>sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein 2
OS=Mus musculus GN=Srrm2 PE=1 SV=2
Length = 2703

Score = 32.0 bits (71), Expect = 2.3
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +2

Query: 170 NIKRKRCTDTLEKPQQEAYANSIIDFYALKSKAGGEQAICIGGSQCMKPKT*PRQTKYQS 349
N++ CT T PQ+++++ S D +KS+ Q+ C G S +K T PRQ+ +S
Sbjct: 832 NMQADECTAT---PQRQSHSESSPDG-EVKSRTPSRQS-CSGSSPRVKSSTPPRQSPSRS 886

Query: 350 CKPSSQAK 373
P + K
Sbjct: 887 SSPQPKVK 894


>sp|Q7EYH7|NIP32_ORYSJ Aquaporin NIP3-2 OS=Oryza sativa subsp.
japonica GN=NIP3-2 PE=2 SV=1
Length = 305

Score = 31.2 bits (69), Expect = 3.9
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +3

Query: 243 ISTLSNPRQGVSKRYALE----AASA*NQRHSPGKQNTNPANHHL 365
I+ + +PR G SK E AA+A +QRH+ ++T A+HHL
Sbjct: 34 IAIIISPRAGSSKILPFELVNGAANAGSQRHADPAESTPEAHHHL 78


>sp|Q9WVG9|MS3L1_MOUSE Male-specific lethal 3 homolog OS=Mus
musculus GN=Msl3 PE=2 SV=3
Length = 525

Score = 31.2 bits (69), Expect = 3.9
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3

Query: 207 NPNKRLMQIP*SISTLSNPRQGVSKRYALEAASA*NQR--HSPGKQNTNPANHHLKQSKC 380
N KRL+++P + ++ V K +A+ AA + N+R H +T+ H++ K
Sbjct: 196 NRRKRLVKLPCQTNIITILESYV-KHFAINAAFSANERPRHHHAMMHTHMNVHYVPAEKN 254

Query: 381 LNRCKELTD 407
++ CKE+ D
Sbjct: 255 VDLCKEMVD 263


>sp|Q8PXD4|Y1287_METMA UPF0313 protein MM_1287 OS=Methanosarcina
mazei GN=MM_1287 PE=3 SV=1
Length = 626

Score = 30.8 bits (68), Expect = 5.1
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +2

Query: 137 EVLSQHIDGNNNIKRK----RCTDTLEKPQQEAYANSIIDFYALKSKAGGEQAI 286
E+ + HI G I + R TD + KP +E Y F A K G EQ I
Sbjct: 457 ELCAHHISGQLRIAPEHFSGRVTDAMSKPGKEVYEKFADRFNAFNKKCGKEQYI 510


>sp|P96119|TROD_TREPA Zinc transport system membrane protein troD
OS=Treponema pallidum GN=troD PE=3 SV=1
Length = 367

Score = 30.8 bits (68), Expect = 5.1
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Frame = -1

Query: 349 GLVFC--LPGLCLWFHALAASNAYRLLTPCLGFESVEIDYGICISL---LLGFFQRVGAS 185
G V C L L L+F L S +L LGF I+YG+ +++ +G F VGA
Sbjct: 145 GSVLCGLLLLLALFFKELKISTFDPVLATSLGFSPTLINYGLMLAVSITCVGAFDSVGAV 204

Query: 184 LSLYVVV---------AINVLR*YLICAMF-SCSSFFGLXKAL 86
L + +++ N+L ++ ++ SC+S GL A+
Sbjct: 205 LVIALMITPPAAALLLTDNLLLMLVLASLLASCASISGLFLAV 247


>sp|Q9QYY8|SPAST_MOUSE Spastin OS=Mus musculus GN=Spast PE=2 SV=2
Length = 614

Score = 30.8 bits (68), Expect = 5.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3

Query: 386 VEAFALLEMMVCRIGILFAW 327
V FALL ++ C +G+LFAW
Sbjct: 56 VVGFALLRLLACHLGLLFAW 75


>sp|Q8IZU0|FAM9B_HUMAN Protein FAM9B OS=Homo sapiens GN=FAM9B PE=2
SV=1
Length = 186

Score = 30.4 bits (67), Expect = 6.7
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1

Query: 193 RHAGKTPTRGLCKFHNRFLRSQIQGRG*ASDMHW-RQPVHETKDIAQAN 336
+HAGK P R C+ NRF ++ + +D H R+P ET + AN
Sbjct: 7 KHAGKDPVRDECEERNRFTETREED---VTDEHGEREPFAETDEHTGAN 52


>sp|A4IIK1|MFHA1_XENTR Malignant fibrous histiocytoma-amplified
sequence 1 homolog OS=Xenopus tropicalis GN=mfhas1 PE=2
SV=1
Length = 997

Score = 30.0 bits (66), Expect = 8.7
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 19/80 (23%)
Frame = -1

Query: 349 GLVFC--------LPGLCLWF-----------HALAASNAYRLLTPCLGFESVEIDYGIC 227
GL +C L G +W+ HA A N + PCL E ++I+Y
Sbjct: 783 GLCYCINKPKNKLLNGATVWYKFPCYVKNEAPHAEAWINGTNISEPCLAVEQLQIEYSFP 842

Query: 226 ISLLLGFFQRVGASLSLYVV 167
G F R ++ ++V
Sbjct: 843 FIFPPGLFARFSVQINSHIV 862


>sp|Q5R6Y9|MS3L1_PONAB Male-specific lethal 3 homolog OS=Pongo
abelii GN=MSL3 PE=2 SV=1
Length = 521

Score = 30.0 bits (66), Expect = 8.7
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3

Query: 207 NPNKRLMQIP*SISTLSNPRQGVSKRYALEAASA*NQR--HSPGKQNTNPANHHLKQSKC 380
N KRL+++P + ++ V K +A+ AA + N+R H + N H++ K
Sbjct: 192 NRRKRLVKLPCQTNIITILESYV-KHFAINAAFSANERPRHHHVMPHANMNVHYIPAEKN 250

Query: 381 LNRCKELTD 407
++ CKE+ D
Sbjct: 251 VDLCKEMVD 259


tr_hit_id B4D7K1
Definition tr|B4D7K1|B4D7K1_9BACT Molybdopterin oxidoreductase OS=Chthoniobacter flavus Ellin428
Align length 66
Score (bit) 34.7
E-value 3.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912799|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_A05.
(580 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4D7K1|B4D7K1_9BACT Molybdopterin oxidoreductase OS=Chthoniob... 35 3.9
tr|Q8ZPE4|Q8ZPE4_SALTY Putative permease OS=Salmonella typhimuri... 34 5.1
tr|Q5PHX9|Q5PHX9_SALPA Putative permease OS=Salmonella paratyphi... 34 5.1
tr|Q57P84|Q57P84_SALCH Putative permease OS=Salmonella choleraes... 34 5.1
tr|Q32G24|Q32G24_SHIDS Putative uncharacterized protein yddG OS=... 34 5.1
tr|B5RAA9|B5RAA9_SALG2 Putative integral membrane protein OS=Sal... 34 5.1
tr|B5QTN1|B5QTN1_SALEP Putative integral membrane protein OS=Sal... 34 5.1
tr|B5FHJ2|B5FHJ2_SALDC Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B5F5W1|B5F5W1_SALA4 Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B5BJD7|B5BJD7_SALPK Putative permease OS=Salmonella paratyphi... 34 5.1
tr|B4TW19|B4TW19_SALSV Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B4TIJ2|B4TIJ2_SALHS Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B4T5W0|B4T5W0_SALNS Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|A9MYU1|A9MYU1_SALPB Putative uncharacterized protein OS=Salmo... 34 5.1
tr|A9MR01|A9MR01_SALAR Putative uncharacterized protein OS=Salmo... 34 5.1
tr|B5QBR2|B5QBR2_SALVI Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B5PPW8|B5PPW8_SALHA Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B5PE32|B5PE32_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B5P022|B5P022_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B5NLC7|B5NLC7_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B5NB60|B5NB60_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B5N225|B5N225_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B5MJD6|B5MJD6_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B5CAQ0|B5CAQ0_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B5C0Y0|B5C0Y0_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B3ZZX2|B3ZZX2_SALNE Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|B3YCG0|B3YCG0_SALET Inner membrane protein YddG OS=Salmonella... 34 5.1
tr|Q8XAS1|Q8XAS1_ECO57 Putative uncharacterized protein yddG (Pu... 33 8.7
tr|Q8FHH9|Q8FHH9_ECOL6 Putative uncharacterized protein yddG OS=... 33 8.7
tr|Q83KV3|Q83KV3_SHIFL Putative uncharacterized protein yddG OS=... 33 8.7

>tr|B4D7K1|B4D7K1_9BACT Molybdopterin oxidoreductase
OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_4916
PE=4 SV=1
Length = 1259

Score = 34.7 bits (78), Expect = 3.9
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = -3

Query: 344 GILFAWAMSLVSCTGCLQCISLAHPLPWI*ERRNRLWNLHKPLVGVFPACRCIAFSLCCC 165
G +A+A+ L +CTGC C+S H L + E + +W L G ++
Sbjct: 63 GQQYAFAVDLDACTGCKACVSACHSLNGLEE--HEMWRSVGLLHG-----ESYRQTVTTA 115

Query: 164 CHQCVE 147
CH CVE
Sbjct: 116 CHHCVE 121


>tr|Q8ZPE4|Q8ZPE4_SALTY Putative permease OS=Salmonella typhimurium
GN=yddG PE=4 SV=1
Length = 274

Score = 34.3 bits (77), Expect = 5.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3

Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297
L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G
Sbjct: 205 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 264

Query: 296 LQC 288
L C
Sbjct: 265 LLC 267


>tr|Q5PHX9|Q5PHX9_SALPA Putative permease OS=Salmonella paratyphi A
GN=yddG PE=4 SV=1
Length = 274

Score = 34.3 bits (77), Expect = 5.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3

Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297
L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G
Sbjct: 205 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 264

Query: 296 LQC 288
L C
Sbjct: 265 LLC 267


>tr|Q57P84|Q57P84_SALCH Putative permease OS=Salmonella choleraesuis
GN=yddG PE=4 SV=1
Length = 255

Score = 34.3 bits (77), Expect = 5.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3

Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297
L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G
Sbjct: 186 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 245

Query: 296 LQC 288
L C
Sbjct: 246 LLC 248


>tr|Q32G24|Q32G24_SHIDS Putative uncharacterized protein yddG
OS=Shigella dysenteriae serotype 1 (strain Sd197)
GN=yddG PE=4 SV=1
Length = 293

Score = 34.3 bits (77), Expect = 5.1
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -3

Query: 458 AF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGCLQC 288
A+ WN+G+ H + I A+ FTPV + AL +++ W +L+ C G L C
Sbjct: 229 AYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQSALMVCGGSLLC 286


>tr|B5RAA9|B5RAA9_SALG2 Putative integral membrane protein
OS=Salmonella gallinarum (strain 287/91 / NCTC 13346)
GN=yddG PE=4 SV=1
Length = 274

Score = 34.3 bits (77), Expect = 5.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3

Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297
L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G
Sbjct: 205 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 264

Query: 296 LQC 288
L C
Sbjct: 265 LLC 267


>tr|B5QTN1|B5QTN1_SALEP Putative integral membrane protein
OS=Salmonella enteritidis PT4 (strain P125109) GN=yddG
PE=4 SV=1
Length = 274

Score = 34.3 bits (77), Expect = 5.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3

Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297
L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G
Sbjct: 205 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 264

Query: 296 LQC 288
L C
Sbjct: 265 LLC 267


>tr|B5FHJ2|B5FHJ2_SALDC Inner membrane protein YddG OS=Salmonella
dublin (strain CT_02021853) GN=SeD_A1771 PE=4 SV=1
Length = 307

Score = 34.3 bits (77), Expect = 5.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3

Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297
L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G
Sbjct: 238 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 297

Query: 296 LQC 288
L C
Sbjct: 298 LLC 300


>tr|B5F5W1|B5F5W1_SALA4 Inner membrane protein YddG OS=Salmonella
agona (strain SL483) GN=SeAg_B1593 PE=4 SV=1
Length = 307

Score = 34.3 bits (77), Expect = 5.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3

Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297
L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G
Sbjct: 238 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 297

Query: 296 LQC 288
L C
Sbjct: 298 LLC 300


>tr|B5BJD7|B5BJD7_SALPK Putative permease OS=Salmonella paratyphi A
(strain AKU_12601) GN=SSPA1205 PE=4 SV=1
Length = 274

Score = 34.3 bits (77), Expect = 5.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3

Query: 473 LSFRAAF*GWNLGMHHQPIWI-AISQLFTPVEAFALLEMMVCRIGILFAWAMSLVSCTGC 297
L+ A+ WN+G+ H + I A+ FTPV + AL +++ W +++ C G
Sbjct: 205 LTLGFAYAAWNVGILHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGS 264

Query: 296 LQC 288
L C
Sbjct: 265 LLC 267