NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912804
Clone id YMU001_000023_A10
Library
Length 432
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGGTCTCCTTCCCATCAGGATTATATCACCCTCTTCCTCTCATGCCCAGGAAGCATCC
CTGCCCCCAGCTAGAGCCAATCCTACAGACCTGGCGTCACCTGCTGTCAAATTGCCCCTT
CATCCCCACCGCGTCGAGGGTTCCACAGGCAGCATTGAAGATTGACGTCTATGCCAACAT
CACAACATTAAATTCAGCTCCATTGCTGATAGAGGTGCAGATGATAAGACGGACGCGCAC
ATGCTTACATCGTCCGATTCCTCCTCCTGCTTGATATCTACTGCTAACAAGTCGCTTGAT
ATCTTCCGCCAACAGATGCCCCATCTGAATGACATCCAGGATCGCATCAGCTTCCTCGAC
ACAACATGCAATGCCTGCTCTACAGCGGTGGCAAAACCGATCACGATCGACCAATGTATT
GCAACTGCTTGC
■■Homology search results ■■ -
sp_hit_id Q03112
Definition sp|Q03112|EVI1_HUMAN Ecotropic virus integration site 1 protein homolog OS=Homo sapiens
Align length 53
Score (bit) 30.4
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912804|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_A10.
         (432 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03112|EVI1_HUMAN Ecotropic virus integration site 1 protein ...    30   3.2  
sp|Q9U9I5|SWA_DROPS Protein swallow OS=Drosophila pseudoobscura ...    30   4.3  
sp|Q9W534|MOODY_DROME G-protein coupled receptor moody OS=Drosop...    30   5.6  
sp|Q2NEW2|RLA0_METST Acidic ribosomal protein P0 homolog OS=Meth...    29   7.1  
sp|Q32A68|RHAD_SHIDS Rhamnulose-1-phosphate aldolase OS=Shigella...    29   7.1  
sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal dom...    29   7.1  
sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=S...    29   7.3  
sp|Q9Z301|PER2_RAT Period circadian protein homolog 2 OS=Rattus ...    29   9.3  
sp|P14404|EVI1_MOUSE Ecotropic virus integration site 1 protein ...    29   9.3  
sp|Q97KZ2|Y774_CLOAB UPF0272 protein CA_C0774 OS=Clostridium ace...    29   9.6  

>sp|Q03112|EVI1_HUMAN Ecotropic virus integration site 1 protein
           homolog OS=Homo sapiens GN=EVI1 PE=1 SV=2
          Length = 1051

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 11  FPSGLYHPLPLMPRKHPCPQLEPILQTWRH---LLSNCPFIPTASRVPQAALK 160
           FPSGLYH  PL+P   P   L    QT +    L+++   +P    + +A  K
Sbjct: 307 FPSGLYHRPPLIPASSPVKGLSSTEQTNKSQSPLMTHPQILPATQDILKALSK 359


>sp|Q9U9I5|SWA_DROPS Protein swallow OS=Drosophila pseudoobscura
           pseudoobscura GN=swa PE=3 SV=3
          Length = 537

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 307 RQQMPHL-NDIQDRISFLDTTCNACSTAVAKPITIDQC 417
           R   P L +D  D  SF+D    +  T V+ P+ +DQC
Sbjct: 43  RNPAPFLTSDCSDESSFIDAANKSAKTCVSDPVGLDQC 80


>sp|Q9W534|MOODY_DROME G-protein coupled receptor moody
           OS=Drosophila melanogaster GN=moody PE=2 SV=2
          Length = 670

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 64  PPARANPTDLASPAVKLPLHPHRVEGSTGSI 156
           PPA + PT  A P    PLHP   + ST +I
Sbjct: 567 PPATSAPTTPAPPPPSSPLHPLSTDSSTTTI 597


>sp|Q2NEW2|RLA0_METST Acidic ribosomal protein P0 homolog
           OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0
           PE=3 SV=1
          Length = 332

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 122 IPTASRVPQAALKIDVYANITTLNSAPLLIE 214
           I T +   Q+A+ + VYA I    SAPLLI+
Sbjct: 209 IQTLANAYQSAINLSVYAGILNSESAPLLIQ 239


>sp|Q32A68|RHAD_SHIDS Rhamnulose-1-phosphate aldolase OS=Shigella
           dysenteriae serotype 1 (strain Sd197) GN=rhaD PE=3 SV=1
          Length = 274

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 56  HPCPQLEPILQTWRHLLSNCPFIPTASRVPQAALKIDVYANI 181
           HP P+  P+ Q   HLL+N PFI T S      +++D  AN+
Sbjct: 50  HPQPRYIPLSQPM-HLLANTPFIVTGSGKFFRNVQLDPAANL 90


>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain
           phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=2
          Length = 961

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 14  PSGLYHPLPLMPRKHPCPQL 73
           P+ L+HP+P++P+  P P++
Sbjct: 752 PTALFHPMPVLPKAQPGPEV 771


>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit
            OS=Schizosaccharomyces pombe GN=pol3 PE=1 SV=2
          Length = 1086

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = +1

Query: 286  NKSLDIFRQQMPHLNDIQDRISFLDTTCNACSTAVAKPI 402
            N+S +++++Q+  +ND++ R + L T C  C  ++ + +
Sbjct: 1013 NRSAELYQRQVAQVNDLEVRFARLWTQCQRCQGSMHQDV 1051


>sp|Q9Z301|PER2_RAT Period circadian protein homolog 2 OS=Rattus
            norvegicus GN=Per2 PE=1 SV=1
          Length = 1257

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
 Frame = +2

Query: 59   PCPQLEPILQTWRHLLSNCPFIPTASRVPQAALKIDVY--------ANITTLNSAPLLIE 214
            P P   P+      +L + PF P    +PQA      +        + IT  + A     
Sbjct: 887  PLPFAAPLAPVMAFMLPSYPFPPATPNLPQAFFPSQPHFPAHPTLASEITPASQAEFPSR 946

Query: 215  VQMIRRTRTCLHRPIPPPA 271
              M+R+   C   P+ PPA
Sbjct: 947  TSMLRQPCAC---PVTPPA 962


>sp|P14404|EVI1_MOUSE Ecotropic virus integration site 1 protein
           OS=Mus musculus GN=Evi1 PE=1 SV=1
          Length = 1042

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 11  FPSGLYHPLPLMPRKHPCPQLEPILQTWR---HLLSNCPFIPTASRVPQAALK 160
           FPSGLYH  PL+P   P   L    Q+ +    LL++   +P    + +A  K
Sbjct: 307 FPSGLYHRPPLIPASPPVKGLSSTEQSNKCQSPLLTHPQILPATQDILKALSK 359


>sp|Q97KZ2|Y774_CLOAB UPF0272 protein CA_C0774 OS=Clostridium
           acetobutylicum GN=CA_C0774 PE=3 SV=1
          Length = 420

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -1

Query: 360 VEEADAILDVIQMGHLLAED---IKRLVSSRYQAGGGIGRCKH 241
           V   D+I+D++  G  +  D   + ++++SR Q GGG  RC H
Sbjct: 154 VGAVDSIVDIV--GAAICIDYLKVDKILASRVQVGGGFVRCAH 194
tr_hit_id B8DQZ8
Definition tr|B8DQZ8|B8DQZ8_DESVM PAS/PAC sensor hybrid histidine kinase OS=Desulfovibrio vulgaris (strain Miyazaki)
Align length 68
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912804|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_A10.
         (432 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8DQZ8|B8DQZ8_DESVM PAS/PAC sensor hybrid histidine kinase OS...    36   0.84 
tr|Q96U11|Q96U11_NEUCR Putative uncharacterized protein B7A16.09...    33   5.5  
tr|Q7S7A9|Q7S7A9_NEUCR Predicted protein OS=Neurospora crassa GN...    33   5.5  
tr|Q98817|Q98817_ADE41 E3 14.7K OS=Human adenovirus F serotype 4...    33   7.1  
tr|Q64863|Q64863_9ADEN E3 14.7K OS=Human adenovirus F PE=4 SV=1        33   7.1  
tr|B4NU51|B4NU51_DROSI GD24767 OS=Drosophila simulans GN=GD24767...    33   7.1  
tr|Q2GUY3|Q2GUY3_CHAGB Predicted protein OS=Chaetomium globosum ...    33   9.3  

>tr|B8DQZ8|B8DQZ8_DESVM PAS/PAC sensor hybrid histidine kinase
           OS=Desulfovibrio vulgaris (strain Miyazaki) GN=DvMF_2537
           PE=4 SV=1
          Length = 1222

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = -1

Query: 378 AGIACCVEEADAILDVIQMGHLLAEDIKRLVSSRYQAGGGIGRCKHVRVRLIICTSISNG 199
           AG+  C+   D +    Q+ H++A     L+  RY+  G  G+ +H R ++   TS   G
Sbjct: 444 AGVFECIHPDDRVRIAEQLHHVMAHRTSALIEYRYR--GAAGQYRHARQQMTFDTSARTG 501

Query: 198 AEFNVVML 175
               VVML
Sbjct: 502 HREPVVML 509


>tr|Q96U11|Q96U11_NEUCR Putative uncharacterized protein B7A16.095
            OS=Neurospora crassa GN=B7A16.095 PE=4 SV=1
          Length = 2117

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/79 (25%), Positives = 39/79 (49%)
 Frame = +2

Query: 125  PTASRVPQAALKIDVYANITTLNSAPLLIEVQMIRRTRTCLHRPIPPPA*YLLLTSRLIS 304
            PTAS  P  ++ + V    ++  +AP ++   +   T T     +PP A     T+  ++
Sbjct: 1711 PTASDAPTTSITLSVAPGSSSSTTAPAVVSTTLSAPTVT----SVPPAAGTSTTTAAAVT 1766

Query: 305  SANRCPI*MTSRIASASST 361
            S +  P+  T+  A++S+T
Sbjct: 1767 STDPAPVTTTTTTATSSTT 1785


>tr|Q7S7A9|Q7S7A9_NEUCR Predicted protein OS=Neurospora crassa
            GN=NCU04170 PE=4 SV=2
          Length = 2101

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/79 (25%), Positives = 39/79 (49%)
 Frame = +2

Query: 125  PTASRVPQAALKIDVYANITTLNSAPLLIEVQMIRRTRTCLHRPIPPPA*YLLLTSRLIS 304
            PTAS  P  ++ + V    ++  +AP ++   +   T T     +PP A     T+  ++
Sbjct: 1695 PTASDAPTTSITLSVAPGSSSSTTAPAVVSTTLSAPTVT----SVPPAAGTSTTTAAAVT 1750

Query: 305  SANRCPI*MTSRIASASST 361
            S +  P+  T+  A++S+T
Sbjct: 1751 STDPAPVTTTTTTATSSTT 1769


>tr|Q98817|Q98817_ADE41 E3 14.7K OS=Human adenovirus F serotype 41
           PE=4 SV=1
          Length = 122

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 390 HRCRAGIACCVEEADAILDVIQMGHLLAEDIKR 292
           H+C+ G+ C V++A+   DV Q GH L+  + +
Sbjct: 36  HQCKKGLFCLVKQAELCYDVTQQGHELSYTLNK 68


>tr|Q64863|Q64863_9ADEN E3 14.7K OS=Human adenovirus F PE=4 SV=1
          Length = 122

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 390 HRCRAGIACCVEEADAILDVIQMGHLLAEDIKR 292
           H+C+ G+ C V++A+   DV Q GH L+  + +
Sbjct: 36  HQCKKGLFCLVKQAELCYDVTQQGHELSYTLNK 68


>tr|B4NU51|B4NU51_DROSI GD24767 OS=Drosophila simulans GN=GD24767
           PE=4 SV=1
          Length = 135

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = -2

Query: 278 DIKQEEESDDVSMCASVLSSAPLSAMELNLML*CWHRRQSSMLP---VEPSTRWG*RGNL 108
           D + E ES+ V + A V S +   A E  +     HRR+   L    + P+TRW  RGNL
Sbjct: 40  DPQSEIESETVPL-AHVHSHSHSQARESGVRGAAVHRRERRQLSDWLIAPNTRWCGRGNL 98

Query: 107 TAGDARSVGLALAGGR 60
             G    +G    GG+
Sbjct: 99  ANGTYNDLGGDFQGGQ 114


>tr|Q2GUY3|Q2GUY3_CHAGB Predicted protein OS=Chaetomium globosum
           GN=CHGG_08221 PE=4 SV=1
          Length = 268

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 25/81 (30%), Positives = 34/81 (41%)
 Frame = +2

Query: 137 RVPQAALKIDVYANITTLNSAPLLIEVQMIRRTRTCLHRPIPPPA*YLLLTSRLISSANR 316
           R+P A L+      +    S  LL  V     TRT +   + P    LLL +++ S A  
Sbjct: 4   RIPAARLQAACSRPLPATLSRALLGTVPPRTATRTRIREQVQPSVQSLLLRNKMSSKAGF 63

Query: 317 CPI*MTSRIASASSTQHAMPA 379
            P   T+   S SST    PA
Sbjct: 64  SPATSTTAAISGSSTSSPAPA 84