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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912805
Clone id YMU001_000023_A11
Library
Length 389
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTGTGTTTTTTTTTACATGCAAATAACTAAATTGCAATTCACAAGGAGCTACACTTTT
TCATTCTCATGACTGTCAGAATATACAAGGCAATAGGTGAGACATGGAAGACGCATAGTG
TGTCAGAATTCAGGATTCACCTCATTAACATACAAAAGCAATCATTGAGCAAGGGCACTG
GTGTTGTACACTAAGAGGGCACCACCCAACAAGATAGCGCCGAGGGTAAACTGCCCAGAT
AGCCAATCCAGTAGGACCTGCAGCATAGCTATCACCAGAAGTTGACCATTCCTCTGGGAC
ATAGATAGGGCTGTATCCATCGACATTAGCACCATACTTCTTGGTATATTGGTAGACTCC
CTTTCCCTTAGCTTTGCGACCAGAGGCAT
■■Homology search results ■■ -
sp_hit_id Q40070
Definition sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare
Align length 61
Score (bit) 92.0
E-value 8.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912805|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_A11.
         (373 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl...    92   8e-19
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl...    91   1e-18
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl...    91   1e-18
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl...    89   9e-18
sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl...    87   3e-17
sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl...    86   6e-17
sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl...    85   1e-16
sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewa...    31   1.7  
sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu...    30   4.9  
sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr...    30   4.9  
sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ...    30   4.9  
sp|Q6AXP3|CO033_RAT Uncharacterized protein C15orf33 homolog OS=...    29   8.3  

>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1
          Length = 138

 Score = 92.0 bits (227), Expect = 8e-19
 Identities = 43/61 (70%), Positives = 46/61 (75%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVYPRRYLV 192
           ASGR AKGKGVYQ+  KYGANVDGYSPIY PEEWS SGD Y  G TGL +WAV     L+
Sbjct: 65  ASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILL 124

Query: 191 G 189
           G
Sbjct: 125 G 125


>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 42/53 (79%), Positives = 43/53 (81%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAV 213
           ASGRK KGKGVYQY  KYGANVDGYSPIY  +EWS SGD Y  G TGLAIWAV
Sbjct: 65  ASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAV 117


>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1
          Length = 138

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 42/53 (79%), Positives = 43/53 (81%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAV 213
           ASGRK KGKGVYQY  KYGANVDGYSPIY  +EWS SGD Y  G TGLAIWAV
Sbjct: 65  ASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAV 117


>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1
          Length = 136

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 40/53 (75%), Positives = 43/53 (81%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAV 213
           ASGRK KGKGVYQ+  KYGANVDGYSPIY  ++WS SGD Y  G TGLAIWAV
Sbjct: 63  ASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAV 115


>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1
          Length = 140

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 42/61 (68%), Positives = 43/61 (70%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVYPRRYLV 192
           ASGRK KG GVY+Y  KYGANVDGYSPIY   EWS SGD Y  G TGLAIWAV     L 
Sbjct: 67  ASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILA 126

Query: 191 G 189
           G
Sbjct: 127 G 127


>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1
          Length = 141

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 41/61 (67%), Positives = 44/61 (72%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVYPRRYLV 192
           ASGRK KG GVY++  KYGANVDGYSPIY  +EWS SGD Y  G TGLAIWAV     L 
Sbjct: 68  ASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILA 127

Query: 191 G 189
           G
Sbjct: 128 G 128


>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide,
           chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1
          Length = 140

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 40/61 (65%), Positives = 44/61 (72%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVYPRRYLV 192
           +SGRK  GKGVYQ+  KYGANVDGYSPIY  EEW+ +GD YA G TGL IWAV     L 
Sbjct: 67  SSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLA 126

Query: 191 G 189
           G
Sbjct: 127 G 127


>sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC
           OS=Shewanella denitrificans (strain OS217 / ATCC
           BAA-1090 / DSM 15013) GN=thiC PE=3 SV=1
          Length = 686

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 25  SQGATLFHSHDCQNIQGNR*DMEDA*CVRI 114
           SQG+ L+HS D   I  N+ D +DA  VR+
Sbjct: 650 SQGSALYHSIDSSGINDNKNDQQDASVVRV 679


>sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus musculus
           GN=Tcf7l1 PE=1 SV=2
          Length = 584

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 229 NPVGPAA*LSPEVDHSSGT*IGLYPSTLAPYF 324
           +P  P   LSPE+D  +G     +PS L+PY+
Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYY 231


>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal
           transduction-associated protein 2 OS=Rattus norvegicus
           GN=Khdrbs2 PE=1 SV=1
          Length = 349

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 332 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGP 237
           Y   +G N D Y   Y PEEW+T+  S  A P
Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWTTTRSSLKAPP 333
tr_hit_id A4ZGB4
Definition tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein OS=Agave tequilana
Align length 61
Score (bit) 94.4
E-value 2.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912805|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_A11.
         (373 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein...    94   2e-18
tr|A5AWT3|A5AWT3_VITVI Putative uncharacterized protein (Chromos...    91   2e-17
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Popul...    91   2e-17
tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edu...    91   2e-17
tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide, chloro...    91   3e-17
tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subs...    91   3e-17
tr|Q6V7X5|Q6V7X5_TRIPR 10 kDa photosystem II polypeptide OS=Trif...    91   3e-17
tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryz...    91   3e-17
tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragme...    91   3e-17
tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza...    91   3e-17
tr|A2YS77|A2YS77_ORYSI Putative uncharacterized protein OS=Oryza...    91   3e-17
tr|Q8H4P7|Q8H4P7_ORYSJ Os07g0147500 protein OS=Oryza sativa subs...    91   4e-17
tr|Q8GV53|Q8GV53_9LILI Photosystem II 10 kDa protein OS=Xerophyt...    91   4e-17
tr|B8B7A9|B8B7A9_ORYSI Putative uncharacterized protein OS=Oryza...    91   4e-17
tr|A9PJW8|A9PJW8_POPJC Putative uncharacterized protein OS=Popul...    90   5e-17
tr|A9PHU8|A9PHU8_POPTR Putative uncharacterized protein OS=Popul...    90   5e-17
tr|A9PH94|A9PH94_POPTR Putative uncharacterized protein OS=Popul...    90   5e-17
tr|Q6ZF71|Q6ZF71_ORYSJ Putative Photosystem II 10 kDa polypeptid...    89   8e-17
tr|B8B7B0|B8B7B0_ORYSI Putative uncharacterized protein OS=Oryza...    89   8e-17
tr|A3BGK2|A3BGK2_ORYSJ Putative uncharacterized protein OS=Oryza...    89   8e-17
tr|B2BJH0|B2BJH0_OLEEU Photosystem II 10 kDa polypeptide (Fragme...    89   1e-16
tr|Q6XW17|Q6XW17_WHEAT Photosystem II polypeptide (Fragment) OS=...    89   1e-16
tr|A9PAP8|A9PAP8_POPTR Putative uncharacterized protein OS=Popul...    89   1e-16
tr|A8VIE2|A8VIE2_PROJU Chloroplast photosystem II PsbR OS=Prosop...    88   2e-16
tr|A9S7M9|A9S7M9_PHYPA Predicted protein OS=Physcomitrella paten...    88   2e-16
tr|Q2PXN6|Q2PXN6_ARAHY Chloroplast photosystem II 10 kDa protein...    87   3e-16
tr|Q0WWI7|Q0WWI7_ARATH PSII-R protein OS=Arabidopsis thaliana GN...    87   4e-16
tr|A9XNP5|A9XNP5_9MYRT Photosystem II 10 kDa polypeptide (Fragme...    87   5e-16
tr|A9XNP4|A9XNP4_9MYRT Photosystem II 10 kDa polypeptide (Fragme...    87   5e-16
tr|A9XNP2|A9XNP2_9MYRT Photosystem II 10 kDa polypeptide (Fragme...    87   5e-16

>tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein
           OS=Agave tequilana PE=2 SV=1
          Length = 144

 Score = 94.4 bits (233), Expect(2) = 2e-18
 Identities = 44/61 (72%), Positives = 46/61 (75%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVYPRRYLV 192
           ASGRKAKGKGVYQ+  KYGANVDGYSPIY PEEWS SGD Y  G TGL IWA+     L 
Sbjct: 71  ASGRKAKGKGVYQFVDKYGANVDGYSPIYSPEEWSPSGDVYVGGTTGLLIWAITLAGLLA 130

Query: 191 G 189
           G
Sbjct: 131 G 131



 Score = 21.2 bits (43), Expect(2) = 2e-18
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -1

Query: 175 VYNTSALAQ 149
           VYNTSALAQ
Sbjct: 136 VYNTSALAQ 144


>tr|A5AWT3|A5AWT3_VITVI Putative uncharacterized protein (Chromosome
           chr19 scaffold_35, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00025803001 PE=4 SV=1
          Length = 139

 Score = 90.9 bits (224), Expect(2) = 2e-17
 Identities = 42/61 (68%), Positives = 45/61 (73%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVYPRRYLV 192
           ASGRK KGKGVYQ+  KYGANVDGYSPIY P+EWS  GD Y  G TGL IWAV     L+
Sbjct: 66  ASGRKGKGKGVYQFVDKYGANVDGYSPIYSPDEWSPGGDVYVGGTTGLLIWAVTLAGLLL 125

Query: 191 G 189
           G
Sbjct: 126 G 126



 Score = 21.2 bits (43), Expect(2) = 2e-17
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -1

Query: 175 VYNTSALAQ 149
           VYNTSALAQ
Sbjct: 131 VYNTSALAQ 139


>tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 137

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 44/61 (72%), Positives = 45/61 (73%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVYPRRYLV 192
           ASGRK KGKGVYQY  KYGANVDGYSPIY  +EWS SGD YA G TGL IWAV     L 
Sbjct: 64  ASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYAGGKTGLLIWAVTLAGILA 123

Query: 191 G 189
           G
Sbjct: 124 G 124


>tr|A0S601|A0S601_9POAL PS II 10 kDa protein OS=Phyllostachys edulis
           PE=2 SV=1
          Length = 130

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 40/53 (75%), Positives = 43/53 (81%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAV 213
           A+GRK KGKGVYQ+  KYGANVDGYSPIY PEEWS SGD Y  G TGL IWA+
Sbjct: 57  ANGRKGKGKGVYQFVDKYGANVDGYSPIYSPEEWSPSGDVYVGGTTGLLIWAI 109


>tr|B5X5G7|B5X5G7_SALSA Photosystem II 10 kDa polypeptide,
           chloroplast OS=Salmo salar GN=PSBR PE=2 SV=1
          Length = 138

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 42/61 (68%), Positives = 45/61 (73%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVYPRRYLV 192
           ASGR AKGKGVYQ+  KYGANVDGYSPIY PEEWS  GD Y  G TGL +WAV     L+
Sbjct: 65  ASGRVAKGKGVYQFANKYGANVDGYSPIYTPEEWSPGGDVYVGGKTGLFLWAVTLAGILL 124

Query: 191 G 189
           G
Sbjct: 125 G 125


>tr|Q6ZBV1|Q6ZBV1_ORYSJ Os08g0200300 protein OS=Oryza sativa subsp.
           japonica GN=P0556A11.19 PE=2 SV=1
          Length = 130

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 40/53 (75%), Positives = 44/53 (83%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAV 213
           ASGRK+ GKGVYQ+  KYGANVDGYSPIY PEEWS +GD+Y  G TGL IWAV
Sbjct: 57  ASGRKSTGKGVYQFVDKYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAV 109


>tr|Q6V7X5|Q6V7X5_TRIPR 10 kDa photosystem II polypeptide
           OS=Trifolium pratense PE=2 SV=1
          Length = 136

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 42/61 (68%), Positives = 46/61 (75%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVYPRRYLV 192
           ASGRK KGKGVYQ+  KYGANVDGYSPIY P++WS +GD Y  G TGLAIWAV     L 
Sbjct: 63  ASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLA 122

Query: 191 G 189
           G
Sbjct: 123 G 123


>tr|P93443|P93443_ORYSA Photosystem II 10 kDa polypeptide OS=Oryza
           sativa PE=2 SV=1
          Length = 126

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 40/53 (75%), Positives = 44/53 (83%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAV 213
           ASGRK+ GKGVYQ+  KYGANVDGYSPIY PEEWS +GD+Y  G TGL IWAV
Sbjct: 53  ASGRKSTGKGVYQFVDKYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAV 105


>tr|A6MZV5|A6MZV5_ORYSI Photosystem ii 10 kDa polypeptide (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 128

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 40/53 (75%), Positives = 44/53 (83%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAV 213
           ASGRK+ GKGVYQ+  KYGANVDGYSPIY PEEWS +GD+Y  G TGL IWAV
Sbjct: 55  ASGRKSTGKGVYQFVDKYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAV 107


>tr|A3BQJ5|A3BQJ5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025317 PE=4 SV=1
          Length = 704

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 40/53 (75%), Positives = 44/53 (83%)
 Frame = -3

Query: 371 ASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAV 213
           ASGRK+ GKGVYQ+  KYGANVDGYSPIY PEEWS +GD+Y  G TGL IWAV
Sbjct: 631 ASGRKSTGKGVYQFVDKYGANVDGYSPIYSPEEWSPTGDTYVGGTTGLLIWAV 683