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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912807
Clone id YMU001_000023_B01
Library
Length 433
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGTGACACAAACATAACACAGCTACATCGTTAATAAGATAATAAGCACTGAAGTTAAAC
ATTTCATATTACTCTTGGAATTGGCAAATTAAGCCATCACAATCGACAAGCTCACCCATT
ACAGTTAACTATAACTGAGCGGTGATTAGCAGCGGTGTTGGGCTCACAAAAGCGTCCGAG
CCTAAACTCCTCTGCACTTCAATCAGCGTCGAAAAGGTCGGTTAGCGTCGCGATCACGAG
GCCCCCGCGGACCATCACGTGCCCCGGGACGAGATCCAGGGTAGCGAGAATATTGCAACC
GTAGCGCAGGCGACTCACGATCATTCTCGTCAAATTTATACCCTTGCAAAGCCTCCAATG
CGATAGAGGCACTCTTTGGGTCCGTAAAGTCCACAAAACACAGTATAAACTGATCACCAT
CCCTCTTTTCCTC
■■Homology search results ■■ -
sp_hit_id O59784
Definition sp|O59784|MDE7_SCHPO RNA-binding protein mde7 OS=Schizosaccharomyces pombe
Align length 42
Score (bit) 32.0
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912807|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_B01.
         (433 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O59784|MDE7_SCHPO RNA-binding protein mde7 OS=Schizosaccharom...    32   1.1  
sp|P71588|PSTP_MYCTU PP2C-family Ser/Thr phosphatase OS=Mycobact...    30   4.3  
sp|A0JPK3|ZFP57_RAT Zinc finger protein 57 OS=Rattus norvegicus ...    29   7.3  
sp|Q9C5Z1|EIF3B_ARATH Eukaryotic translation initiation factor 3...    29   7.3  
sp|Q7SXP4|SF1L1_DANRE Splicing factor, arginine/serine-rich 1-li...    29   9.6  
sp|Q92766|RREB1_HUMAN RAS-responsive element-binding protein 1 O...    29   9.6  
sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing prot...    29   9.6  
sp|P56821|EIF3B_TOBAC Eukaryotic translation initiation factor 3...    29   9.6  

>sp|O59784|MDE7_SCHPO RNA-binding protein mde7
           OS=Schizosaccharomyces pombe GN=mde7 PE=2 SV=1
          Length = 761

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 403 LCFVDFTDPKSASIALEALQGYKFDENDRESPALRLQYSRYP 278
           +CFV+F +   A+ A+E +QG   D  D+    +RL YS+ P
Sbjct: 641 MCFVEFEEVCHAAKAMEKMQGAALD--DKIKGGIRLSYSKNP 680


>sp|P71588|PSTP_MYCTU PP2C-family Ser/Thr phosphatase
           OS=Mycobacterium tuberculosis GN=pstP PE=1 SV=2
          Length = 514

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 430 EKRDGDQFILCFVDFTDPKSASIALEALQ 344
           E R GD+++LC    +DP S    LEALQ
Sbjct: 179 EARAGDRYLLCSDGLSDPVSDETILEALQ 207


>sp|A0JPK3|ZFP57_RAT Zinc finger protein 57 OS=Rattus norvegicus
           GN=Zfp57 PE=2 SV=1
          Length = 406

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 140 R*LAAVLGSQKRPSLNSSALQSASKRSVSVAITRPPRTITCPGTR 274
           R L  + G   R    SS   S   RS SV + RP   + CP  R
Sbjct: 232 RHLKVIQGPVARAKARSSRASSLEVRSTSVTVARPREKVYCPYCR 276


>sp|Q9C5Z1|EIF3B_ARATH Eukaryotic translation initiation factor 3
           subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=2 SV=1
          Length = 712

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 400 CFVDFTDPKSASIALEALQGYKFDEN 323
           CF++F  P+ A  A E   GYK D++
Sbjct: 108 CFIEFNTPQEAQNAKEKSHGYKLDKS 133


>sp|Q7SXP4|SF1L1_DANRE Splicing factor, arginine/serine-rich 1-like
           protein 1 OS=Danio rerio GN=sfrs1l PE=2 SV=1
          Length = 245

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 433 EEKRDGDQFILCFVDFTDPKSASIALEALQGYKFD 329
           + +R G  F   FV+F DP+ A  A+ A  GY +D
Sbjct: 47  KNRRGGPPF--AFVEFEDPRDAEDAVYARDGYDYD 79


>sp|Q92766|RREB1_HUMAN RAS-responsive element-binding protein 1
            OS=Homo sapiens GN=RREB1 PE=1 SV=3
          Length = 1687

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +1

Query: 241  APADHHVPRDEIQGS 285
            APADHH P DE QGS
Sbjct: 1211 APADHHGPSDEEQGS 1225


>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein
           1 OS=Aspergillus fumigatus GN=mrd1 PE=3 SV=1
          Length = 825

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 397 FVDFTDPKSASIALEALQGYKFDEND 320
           FVDF     A  AL A+ GYK D+++
Sbjct: 647 FVDFRTKAQAQAALAAMDGYKLDQHE 672


>sp|P56821|EIF3B_TOBAC Eukaryotic translation initiation factor 3
           subunit B OS=Nicotiana tabacum GN=TIF3B1 PE=2 SV=1
          Length = 719

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 400 CFVDFTDPKSASIALEALQGYKFDEN 323
           CF+++  P+ A ++ E   GYK D +
Sbjct: 112 CFIEYNTPQEAELSKEKTHGYKLDRS 137
tr_hit_id A9NNP8
Definition tr|A9NNP8|A9NNP8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 48
Score (bit) 76.6
E-value 6.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912807|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_B01.
         (433 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NNP8|A9NNP8_PICSI Putative uncharacterized protein OS=Picea...    77   6e-13
tr|A9NN64|A9NN64_PICSI Putative uncharacterized protein OS=Picea...    76   7e-13
tr|B8B9D0|B8B9D0_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A3BVG5|A3BVG5_ORYSJ Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A7QEZ7|A7QEZ7_VITVI Chromosome chr16 scaffold_86, whole genom...    72   1e-11
tr|Q8GYL1|Q8GYL1_ARATH Putative uncharacterized protein At1g7694...    71   3e-11
tr|A1A6K6|A1A6K6_ARATH At1g76940 OS=Arabidopsis thaliana PE=2 SV=1     71   3e-11
tr|Q8H0P8|Q8H0P8_MEDTR RNA-binding protein OS=Medicago truncatul...    69   9e-11
tr|Q8H642|Q8H642_ORYSJ Os06g0127500 protein OS=Oryza sativa subs...    69   2e-10
tr|A9SF35|A9SF35_PHYPA Predicted protein (Fragment) OS=Physcomit...    69   2e-10
tr|A2Y8S8|A2Y8S8_ORYSI Putative uncharacterized protein OS=Oryza...    69   2e-10
tr|A7QMY7|A7QMY7_VITVI Chromosome undetermined scaffold_129, who...    65   2e-09
tr|A5B7S3|A5B7S3_VITVI Putative uncharacterized protein OS=Vitis...    65   2e-09
tr|Q652A3|Q652A3_ORYSJ Os09g0527500 protein OS=Oryza sativa subs...    60   5e-08
tr|Q0J072|Q0J072_ORYSJ Os09g0527100 protein OS=Oryza sativa subs...    60   5e-08
tr|B8BDW8|B8BDW8_ORYSI Putative uncharacterized protein OS=Oryza...    60   5e-08
tr|B8BDW7|B8BDW7_ORYSI Putative uncharacterized protein OS=Oryza...    60   5e-08
tr|B7EM90|B7EM90_ORYSJ cDNA clone:J033046E14, full insert sequen...    60   5e-08
tr|B7E9N3|B7E9N3_ORYSJ cDNA clone:002-108-A10, full insert seque...    60   5e-08
tr|A3C0U2|A3C0U2_ORYSJ Putative uncharacterized protein OS=Oryza...    60   5e-08
tr|A3C0U1|A3C0U1_ORYSJ Putative uncharacterized protein OS=Oryza...    60   5e-08
tr|A7P4N7|A7P4N7_VITVI Chromosome chr4 scaffold_6, whole genome ...    59   9e-08
tr|Q9LMP3|Q9LMP3_ARATH F16F4.3 protein OS=Arabidopsis thaliana G...    56   8e-07
tr|A6MD15|A6MD15_9ORYZ RNA recognition motif family protein OS=O...    55   1e-06
tr|Q0DEK2|Q0DEK2_ORYSJ Os06g0148000 protein OS=Oryza sativa subs...    52   2e-05
tr|B8B2P5|B8B2P5_ORYSI Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|B6SZV0|B6SZV0_MAIZE Nucleic acid binding protein OS=Zea mays ...    51   3e-05
tr|A5AM11|A5AM11_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A0C1D1|A0C1D1_PARTE Chromosome undetermined scaffold_141, who...    49   1e-04
tr|A0CCE1|A0CCE1_PARTE Chromosome undetermined scaffold_167, who...    49   1e-04

>tr|A9NNP8|A9NNP8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 274

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 34/48 (70%), Positives = 40/48 (83%)
 Frame = -1

Query: 418 GDQFILCFVDFTDPKSASIALEALQGYKFDENDRESPALRLQYSRYPG 275
           GD  +LCFVDFTD + A+ ALEALQGYKFDE DRES  LRLQ++R+PG
Sbjct: 199 GDPLVLCFVDFTDARCAATALEALQGYKFDETDRESTGLRLQFARFPG 246


>tr|A9NN64|A9NN64_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 265

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 31/48 (64%), Positives = 42/48 (87%)
 Frame = -1

Query: 418 GDQFILCFVDFTDPKSASIALEALQGYKFDENDRESPALRLQYSRYPG 275
           G+  +LCFVDF +P  A+ A+EALQGYKFDEN++ESP+L+LQ++RYPG
Sbjct: 200 GEPLVLCFVDFANPNCAATAMEALQGYKFDENEKESPSLKLQFARYPG 247


>tr|B8B9D0|B8B9D0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30140 PE=4 SV=1
          Length = 218

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 33/48 (68%), Positives = 41/48 (85%)
 Frame = -1

Query: 418 GDQFILCFVDFTDPKSASIALEALQGYKFDENDRESPALRLQYSRYPG 275
           GD  +LCFVDF +P  A++ALEALQGYKFDE+DR+S  LRLQ+SR+PG
Sbjct: 160 GDPHVLCFVDFDNPAQATLALEALQGYKFDEHDRDSAHLRLQFSRFPG 207


>tr|A3BVG5|A3BVG5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_027037 PE=4 SV=1
          Length = 233

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 33/48 (68%), Positives = 41/48 (85%)
 Frame = -1

Query: 418 GDQFILCFVDFTDPKSASIALEALQGYKFDENDRESPALRLQYSRYPG 275
           GD  +LCFVDF +P  A++ALEALQGYKFDE+DR+S  LRLQ+SR+PG
Sbjct: 175 GDPHVLCFVDFDNPAQATLALEALQGYKFDEHDRDSAHLRLQFSRFPG 222


>tr|A7QEZ7|A7QEZ7_VITVI Chromosome chr16 scaffold_86, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037217001
           PE=4 SV=1
          Length = 230

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 31/49 (63%), Positives = 40/49 (81%)
 Frame = -1

Query: 418 GDQFILCFVDFTDPKSASIALEALQGYKFDENDRESPALRLQYSRYPGS 272
           GD  +LCFVDF  P  A+ A++ALQGYKFDE+DR+S  LRLQ++RYPG+
Sbjct: 172 GDPLVLCFVDFVSPAHAATAMDALQGYKFDEHDRDSVNLRLQFARYPGA 220


>tr|Q8GYL1|Q8GYL1_ARATH Putative uncharacterized protein
           At1g76940/F22K20_23 OS=Arabidopsis thaliana
           GN=At1g76940/F22K20_23 PE=2 SV=1
          Length = 156

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/51 (62%), Positives = 40/51 (78%)
 Frame = -1

Query: 424 RDGDQFILCFVDFTDPKSASIALEALQGYKFDENDRESPALRLQYSRYPGS 272
           R+GD  +LCFVDFT+P  A+ AL ALQGY+ DEN+ +S  LRLQ+SR PGS
Sbjct: 98  RNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGS 148


>tr|A1A6K6|A1A6K6_ARATH At1g76940 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 233

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/51 (62%), Positives = 40/51 (78%)
 Frame = -1

Query: 424 RDGDQFILCFVDFTDPKSASIALEALQGYKFDENDRESPALRLQYSRYPGS 272
           R+GD  +LCFVDFT+P  A+ AL ALQGY+ DEN+ +S  LRLQ+SR PGS
Sbjct: 175 RNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGS 225


>tr|Q8H0P8|Q8H0P8_MEDTR RNA-binding protein OS=Medicago truncatula
           GN=rbp1 PE=2 SV=1
          Length = 261

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 34/53 (64%), Positives = 38/53 (71%)
 Frame = -1

Query: 433 EEKRDGDQFILCFVDFTDPKSASIALEALQGYKFDENDRESPALRLQYSRYPG 275
           E K  GD  ILCFVDF +P  A+ AL ALQGYK DE + ES  LRLQ+SRYPG
Sbjct: 186 EAKHRGDPLILCFVDFANPACAATALSALQGYKVDEINPESSHLRLQFSRYPG 238


>tr|Q8H642|Q8H642_ORYSJ Os06g0127500 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0038F22.17 PE=4 SV=1
          Length = 293

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 30/48 (62%), Positives = 38/48 (79%)
 Frame = -1

Query: 418 GDQFILCFVDFTDPKSASIALEALQGYKFDENDRESPALRLQYSRYPG 275
           GD  +LCFVDF     A+IA++ALQGYKFDE+DR SP LRLQ++R+ G
Sbjct: 232 GDPILLCFVDFETASQAAIAMDALQGYKFDEHDRNSPHLRLQFARFTG 279


>tr|A9SF35|A9SF35_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_18967 PE=4 SV=1
          Length = 158

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 30/52 (57%), Positives = 40/52 (76%)
 Frame = -1

Query: 430 EKRDGDQFILCFVDFTDPKSASIALEALQGYKFDENDRESPALRLQYSRYPG 275
           ++ DG + +LCFV+F D + A+ ALEALQGYKFDE D ES  LRL ++R+PG
Sbjct: 105 KRADGGKVVLCFVEFADARCAATALEALQGYKFDETDHESYVLRLTFARHPG 156