BP912808
Clone id YMU001_000023_B02
Library
Length 430
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATGCGCGGCCGAGGAATCTTTCGTGATTGGGATATTGAAGTTGACAATGTGATTATGGCC
GTGTAAAACAGTAAAGACTTAACAGTCGAGCCCACGATAAAAGCCTTACCAGCACGTCCA
TCACCTATCCTCTTTGATAGAAAGGGCACTCTTGATTGTGGCATTAGTAGTAATACCTTC
TAATCTTGCAACACAAAGTTGAAGTTCAACAGAGAGGTTAATTGAAGCCATCTTTTCCAT
CCATACGTGAAGAGGTCTAACACCAGCTCTTTCACACTGCTTGGAAGGCTTGTGTAGACT
CCCACATGACCAAATTAAATGCTGTGCTCATTTTTCTATACTCGTCTTACAAGCTTCCAC
GCCTTTGGTAAAAACAGCATAGTACATAGAAAAGTCATAGCAGCCCTTACATTGTTTCTC
AAGGCCGACC
■■Homology search results ■■ -
sp_hit_id P25994
Definition sp|P25994|CARB_BACSU Carbamoyl-phosphate synthase pyrimidine-specific large chain OS=Bacillus subtilis
Align length 60
Score (bit) 29.6
E-value 5.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912808|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_B02.
(430 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P25994|CARB_BACSU Carbamoyl-phosphate synthase pyrimidine-spe... 30 5.3
sp|Q23495|HEAT1_CAEEL HEAT repeat-containing protein 1 homolog O... 29 7.1

>sp|P25994|CARB_BACSU Carbamoyl-phosphate synthase
pyrimidine-specific large chain OS=Bacillus subtilis
GN=pyrAB PE=3 SV=1
Length = 1071

Score = 29.6 bits (65), Expect = 5.3
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -3

Query: 290 SLPSSVKELVLDLFTYGWKRWLQLTSLLNFNFVLQD*KVLLLMPQSR----VPFLSKRIG 123
SL +K+ + + +T + L + LLN FVL +V +L R VPFLSK G
Sbjct: 791 SLTEDIKKKI-EQYTIALAKGLNIVGLLNIQFVLSQGEVYVLEVNPRSSRTVPFLSKITG 849


>sp|Q23495|HEAT1_CAEEL HEAT repeat-containing protein 1 homolog
OS=Caenorhabditis elegans GN=ZK430.1 PE=2 SV=1
Length = 1650

Score = 29.3 bits (64), Expect = 7.1
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +2

Query: 116 VHHLSSLIERALLIVALVVIPSNLATQS*SSTERLIEAIFSIHT*RGLTPALSHCLEGLC 295
+HH SLI R+LL + L V+P++ +++ + + T + AL + L G
Sbjct: 1292 IHHRLSLIRRSLLSIELRVLPAH-----------IVKTVGELKTEKKALSALFNLLTGYI 1340

Query: 296 RLPHDQ 313
H Q
Sbjct: 1341 ETQHQQ 1346


tr_hit_id B7GFA3
Definition tr|B7GFA3|B7GFA3_9BACI Carbamoylphosphate synthase large subunit OS=Anoxybacillus flavithermus WK1
Align length 85
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912808|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_B02.
(430 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7GFA3|B7GFA3_9BACI Carbamoylphosphate synthase large subunit... 35 1.4
tr|A4IM33|A4IM33_GEOTN Carbamoyl-phosphate synthase, large subun... 34 3.2
tr|B4BJB1|B4BJB1_9BACI Carbamoyl-phosphate synthase, large subun... 34 3.2
tr|Q4DEN2|Q4DEN2_TRYCR Putative uncharacterized protein OS=Trypa... 33 7.1

>tr|B7GFA3|B7GFA3_9BACI Carbamoylphosphate synthase large subunit
OS=Anoxybacillus flavithermus WK1 GN=pyrAB PE=4 SV=1
Length = 1074

Score = 35.4 bits (80), Expect = 1.4
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = -3

Query: 290 SLPSSVKELVLDLFTYGWKRWLQLTSLLNFNFVLQD*KVLLLMPQSR----VPFLSK--R 129
+L +K+ ++D +T + L++ LLN FVL D V +L R VPFLSK
Sbjct: 800 TLTKDMKQQIVD-YTIALAKGLRIVGLLNIQFVLYDGDVYVLEVNPRSSRTVPFLSKITN 858

Query: 128 IGDGRAGKAFIVGSTVKSLLFYTAI 54
+ I+G+ + L +YT +
Sbjct: 859 VPMANIATKVILGAKLNELGYYTGL 883


>tr|A4IM33|A4IM33_GEOTN Carbamoyl-phosphate synthase, large subunit
OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=pyrAB PE=4 SV=1
Length = 1065

Score = 34.3 bits (77), Expect = 3.2
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Frame = -3

Query: 290 SLPSSVKELVLDLFTYGWKRWLQLTSLLNFNFVLQD*KVLLLMPQSR----VPFLSKRIG 123
+L + V E ++D +T R L++ LLN FV+ D V +L R VPFLSK G
Sbjct: 791 TLSADVIEKIVD-YTVKLARGLRIVGLLNIQFVISDSDVYVLEVNPRSSRTVPFLSKITG 849

Query: 122 DGRAGKA--FIVGSTVKSLLFYTAIITLSTSI 33
A A I+G+ + + + T + S +
Sbjct: 850 VPMANLATKAILGAKLAEIGYETGVCPTSEGV 881


>tr|B4BJB1|B4BJB1_9BACI Carbamoyl-phosphate synthase, large subunit
OS=Geobacillus sp. G11MC16 GN=G11MC16DRAFT_0161 PE=4 SV=1
Length = 1065

Score = 34.3 bits (77), Expect = 3.2
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Frame = -3

Query: 290 SLPSSVKELVLDLFTYGWKRWLQLTSLLNFNFVLQD*KVLLLMPQSR----VPFLSKRIG 123
+L + V E ++D +T R L++ LLN FV+ D V +L R VPFLSK G
Sbjct: 791 TLSADVIEKIVD-YTVKLARGLRIVGLLNIQFVISDSDVYVLEVNPRSSRTVPFLSKITG 849

Query: 122 DGRAGKA--FIVGSTVKSLLFYTAIITLSTSI 33
A A I+G+ + + + T + S +
Sbjct: 850 VPMANLATKAILGAKLAEIGYETGVCPTSEGV 881


>tr|Q4DEN2|Q4DEN2_TRYCR Putative uncharacterized protein
OS=Trypanosoma cruzi GN=Tc00.1047053506769.40 PE=4 SV=1
Length = 417

Score = 33.1 bits (74), Expect = 7.1
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +2

Query: 32 ILKLTM*LWPCKTVKT*QSSPR*KPYQHVHHLSSLIERALLIVALVVIPSNLATQS*SST 211
I K+T+ KT +S R + HV S++ER L+I+ V++P+ LAT+
Sbjct: 320 ITKMTVMNCCAKTAVEQESRQRDRKMHHV----SIVERMLIIIFSVLLPARLATRCHQGA 375

Query: 212 ERLIE 226
E ++E
Sbjct: 376 EEVVE 380