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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912810
Clone id YMU001_000023_B05
Library
Length 586
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGCACATTTATAGGTCTGCCGTGTGTCGACACGCACACGCATAAGCGAGAGAGAGAGACG
CGTCTCGAGTAGCAATGTCTCTCTGCCTACAAATTACATAAAAAATGACACTTGTCTGCT
GCCTTTCCGTCGCCCCCATCCCTCTGCCCTCTTCCGCAAACCTGGCTTGCTTCTCATACT
TCTGAGTGACCTTCTTCGTCGTCGAGTAAGTGTAGCTTTCTTGTCTGCTTTGCTGTTTGT
TAGGGTTAAAGTTGTAGGCTATGGACCCTCAAATACATTACCCTTCTTTAAATGCCCCGG
CCGAAACGCCTCTCTCTTCTGATCAGCAGTCGCGCCTGCGCTACTCAGACCCCGTCTCCA
TAGATGCCATCACTGCAGATCTTTCCAAGAAGATCGAGGTCTCCCCTGTTGAGGCATCCG
AGACTCTGTTAGTCTCTGTGCCTGACGCCGTCGCTCACCTTGTCGATCGCGAGGCTAGCC
CTCACCTTGCAAGTGGCCCCTTCTCTATTGTTCGTCTTAACCAGGATGGCAACGGCATTG
CTGTCTTTGCACGTGTAGGCAAGGAGCTTCAATGGCCTCTCACAAA
■■Homology search results ■■ -
sp_hit_id Q6BXI1
Definition sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16 OS=Debaryomyces hansenii
Align length 45
Score (bit) 33.5
E-value 0.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912810|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_B05.
         (586 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16 OS=Debar...    33   0.80 
sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Or...    30   6.8  
sp|Q01495|PEX5_PICAN Peroxisomal targeting signal receptor OS=Pi...    30   6.8  
sp|Q13751|LAMB3_HUMAN Laminin subunit beta-3 OS=Homo sapiens GN=...    30   6.8  
sp|Q65W81|RIBB_MANSM 3,4-dihydroxy-2-butanone 4-phosphate syntha...    30   8.8  
sp|Q2RBE3|WNK7_ORYSJ Probable serine/threonine-protein kinase WN...    30   8.9  

>sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16
           OS=Debaryomyces hansenii GN=SEC16 PE=3 SV=2
          Length = 2130

 Score = 33.5 bits (75), Expect = 0.80
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 258 AMDPQIHYPSLNAPAETPLSSDQQSRLRYSDPVSIDAITADLSKK 392
           +M P++H PS+NA    P+ +++Q+ +  S P+S    T  L KK
Sbjct: 620 SMPPKLHSPSMNAVGSVPVPNEKQATM--SQPLSAAVSTQGLQKK 662


>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza
           sativa subsp. japonica GN=U2AF65A PE=2 SV=2
          Length = 574

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -2

Query: 516 DEQ*RRGHLQGEG*PRDRQGERRRQAQRLTESRMPQQGRPRSS 388
           D   RRGH       RDR G RR +++    SR P +GR R S
Sbjct: 124 DRDRRRGHDSERRRDRDRDGHRRHRSR----SRSPSKGRDRRS 162


>sp|Q01495|PEX5_PICAN Peroxisomal targeting signal receptor
           OS=Pichia angusta GN=PEX5 PE=3 SV=1
          Length = 569

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -1

Query: 259 AYNFNPNKQQSRQESYTYSTTKKVTQKYEKQARFAEEGRGMGATERQQTSVIFY 98
           A N NP+ Q   +    +S  K+VTQ + K A+ + EG  M +  +    V+FY
Sbjct: 378 ARNANPDIQADDR----FSLNKRVTQLFIKAAQLSPEGANMDSEVQTGLGVLFY 427


>sp|Q13751|LAMB3_HUMAN Laminin subunit beta-3 OS=Homo sapiens
           GN=LAMB3 PE=1 SV=1
          Length = 1172

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 497 PLLYCSS*PGWQRHCCLCTCRQGASMASHK 586
           P  YC+    WQ  CC C  RQ  +  SH+
Sbjct: 52  PETYCTQYGEWQMKCCKCDSRQPHNYYSHR 81


>sp|Q65W81|RIBB_MANSM 3,4-dihydroxy-2-butanone 4-phosphate synthase
           OS=Mannheimia succiniciproducens (strain MBEL55E)
           GN=ribB PE=3 SV=1
          Length = 214

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +3

Query: 297 PAETPLSSDQQSRLRYSDPVSIDAITADLSKKIEVSPVEASETLLVSVPDAVAHLVDREA 476
           PAET  +      +RY   +    IT +L +K+E+ P+ A+ T +    +  A  V  EA
Sbjct: 46  PAETITTEQMAKLIRYGSGIVCLCITDELCQKLELPPMVAANTSV----NKTAFTVTIEA 101

Query: 477 SPHLASG 497
           +  +++G
Sbjct: 102 AEGVSTG 108


>sp|Q2RBE3|WNK7_ORYSJ Probable serine/threonine-protein kinase WNK7
           OS=Oryza sativa subsp. japonica GN=WNK7 PE=2 SV=2
          Length = 622

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -2

Query: 576 AIEAPCLHVQRQQC-----RCHPG*DEQ*RRGHLQGEG*PRDRQGERRRQAQRLTESR 418
           A+ A  LH Q+Q C     R  P        G     G PR R+GE  R+ +R++ +R
Sbjct: 498 AVSASSLHQQQQHCSASSSRLGPASASASEDGGGGHAGRPRQREGEEERRRRRMSRNR 555
tr_hit_id A9TKT2
Definition tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 64
Score (bit) 78.2
E-value 3.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912810|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_B05.
         (586 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella paten...    78   3e-13
tr|A9U3E2|A9U3E2_PHYPA Predicted protein OS=Physcomitrella paten...    72   2e-11
tr|A9RD05|A9RD05_PHYPA Predicted protein (Fragment) OS=Physcomit...    70   9e-11
tr|A9RAW2|A9RAW2_PHYPA Predicted protein (Fragment) OS=Physcomit...    68   3e-10
tr|A9U2N3|A9U2N3_PHYPA Predicted protein OS=Physcomitrella paten...    67   6e-10
tr|B5TV63|B5TV63_CAMSI Senescence-related protein OS=Camellia si...    66   1e-09
tr|A7QDV5|A7QDV5_VITVI Chromosome chr4 scaffold_83, whole genome...    66   1e-09
tr|Q9SD22|Q9SD22_ARATH Putative uncharacterized protein F24M12.2...    64   5e-09
tr|A9RSE9|A9RSE9_PHYPA Predicted protein (Fragment) OS=Physcomit...    64   6e-09
tr|A7P8A4|A7P8A4_VITVI Chromosome chr3 scaffold_8, whole genome ...    61   4e-08
tr|O65635|O65635_ARATH Putative uncharacterized protein T19K4.11...    61   5e-08
tr|Q94II1|Q94II1_ARATH ERD7 protein (Fragment) OS=Arabidopsis th...    55   2e-06
tr|Q8LA30|Q8LA30_ARATH Putative senescence-associated protein 12...    55   2e-06
tr|O48832|O48832_ARATH Putative senescence-related protein (Prob...    55   2e-06
tr|B8LK66|B8LK66_PICSI Putative uncharacterized protein OS=Picea...    52   3e-05
tr|A9RJ80|A9RJ80_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-05
tr|Q5JM97|Q5JM97_ORYSJ cDNA clone:001-022-B06, full insert seque...    50   1e-04
tr|B8A8R5|B8A8R5_ORYSI Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|A2ZXD7|A2ZXD7_ORYSJ Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|A7PEH2|A7PEH2_VITVI Chromosome chr11 scaffold_13, whole genom...    49   2e-04
tr|A9NV63|A9NV63_PICSI Putative uncharacterized protein OS=Picea...    49   3e-04
tr|Q9LVE6|Q9LVE6_ARATH Similarity to senescence-associated prote...    48   4e-04
tr|Q3EB29|Q3EB29_ARATH Uncharacterized protein At3g21600.2 OS=Ar...    48   4e-04
tr|Q10P99|Q10P99_ORYSJ Os03g0241900 protein OS=Oryza sativa subs...    45   0.002
tr|A2XEE9|A2XEE9_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|B4F8T3|B4F8T3_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.007
tr|Q8GY71|Q8GY71_ARATH Putative uncharacterized protein At4g1545...    42   0.033
tr|O23397|O23397_ARATH Putative uncharacterized protein dl3768w ...    42   0.033
tr|B6U1F2|B6U1F2_MAIZE Senescence-associated protein 12 OS=Zea m...    42   0.033
tr|A9SZ04|A9SZ04_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.28 

>tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_196034 PE=4 SV=1
          Length = 408

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 35/64 (54%), Positives = 47/64 (73%)
 Frame = +3

Query: 390 KIEVSPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKEL 569
           K + +P++  E  LV+VPDA+ HLVD + SPHLA+  FS+VR+ Q GNGI V  RVG++L
Sbjct: 9   KDDDTPLDPREECLVTVPDAIVHLVDDQQSPHLATAHFSVVRITQKGNGIVVLVRVGEDL 68

Query: 570 QWPL 581
            WPL
Sbjct: 69  HWPL 72


>tr|A9U3E2|A9U3E2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_200827 PE=4 SV=1
          Length = 430

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 41/96 (42%), Positives = 53/96 (55%)
 Frame = +3

Query: 294 APAETPLSSDQQSRLRYSDPVSIDAITADLSKKIEVSPVEASETLLVSVPDAVAHLVDRE 473
           +P  +  SS    +++        A  AD++     SPV A E LLV++P A+ HLVD +
Sbjct: 22  SPFPSNASSSLYPKIQSEGRPPAAAAAADMASGSANSPVGAFEELLVTIPGALVHLVDDQ 81

Query: 474 ASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 581
            S  LASG FSIVR+NQ    I V  R G  LQWPL
Sbjct: 82  ESVLLASGDFSIVRINQQNQRIVVLVRAGDSLQWPL 117


>tr|A9RD05|A9RD05_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_23114 PE=4 SV=1
          Length = 365

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 34/58 (58%), Positives = 40/58 (68%)
 Frame = +3

Query: 411 EASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLT 584
           E SE +LV V  AV HLVD E SP LA G FS+V + Q+GNGI  F +VG  L+WPLT
Sbjct: 1   ETSEEVLVRVRGAVVHLVDDEESPLLAEGSFSVVLIEQEGNGIVAFVKVGDNLRWPLT 58


>tr|A9RAW2|A9RAW2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_23136 PE=4 SV=1
          Length = 366

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 33/58 (56%), Positives = 40/58 (68%)
 Frame = +3

Query: 411 EASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLT 584
           EASE +LV +  AV HLVD + SP L  G FSIV + Q GNG+  F RVG +L+WPLT
Sbjct: 1   EASEEVLVRIRGAVVHLVDDQKSPLLGDGDFSIVLIEQAGNGLVTFVRVGDKLRWPLT 58


>tr|A9U2N3|A9U2N3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_100871 PE=4 SV=1
          Length = 287

 Score = 67.4 bits (163), Expect = 6e-10
 Identities = 30/58 (51%), Positives = 38/58 (65%)
 Frame = +3

Query: 405 PVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWP 578
           P+   E  L S P A+ HLVD + +P LA+ PFSIVR+ Q GNG  V  RVG++L WP
Sbjct: 47  PLNPREECLFSTPAAIVHLVDEQQNPRLATDPFSIVRITQKGNGSVVIVRVGEDLHWP 104


>tr|B5TV63|B5TV63_CAMSI Senescence-related protein OS=Camellia
           sinensis PE=2 SV=1
          Length = 448

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 30/60 (50%), Positives = 42/60 (70%)
 Frame = +3

Query: 402 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 581
           S +E+SE +L+ VP  + HL+D+E S  LA G  +IVRL Q GN +AV AR+  ++QWPL
Sbjct: 60  SQLESSEEILIRVPGTIVHLIDKEQSVELACGELTIVRLLQGGNVVAVLARIDDQIQWPL 119


>tr|A7QDV5|A7QDV5_VITVI Chromosome chr4 scaffold_83, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036757001
           PE=4 SV=1
          Length = 395

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 31/60 (51%), Positives = 43/60 (71%)
 Frame = +3

Query: 402 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 581
           +P E+ E +LV +P  + HL+D++ S  LASG  SI+RL Q  N +AV ARVG+E+QWPL
Sbjct: 59  APPESLEEVLVMLPGVILHLIDKQYSVELASGDLSIIRLWQGNNIVAVLARVGQEIQWPL 118


>tr|Q9SD22|Q9SD22_ARATH Putative uncharacterized protein F24M12.290
           (AT3g51250/F24M12_290) OS=Arabidopsis thaliana
           GN=F24M12.290 PE=2 SV=1
          Length = 463

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 30/61 (49%), Positives = 43/61 (70%)
 Frame = +3

Query: 402 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 581
           +P +A+E +L+ VP A+ +L+D+  S  LA G F+IVR+ Q  N +AV A VG E+QWPL
Sbjct: 69  APPQATEEVLIRVPGAILNLIDKSYSVELACGDFTIVRIIQGQNIVAVLANVGNEIQWPL 128

Query: 582 T 584
           T
Sbjct: 129 T 129


>tr|A9RSE9|A9RSE9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_22416 PE=4 SV=1
          Length = 371

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 30/59 (50%), Positives = 38/59 (64%)
 Frame = +3

Query: 405 PVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 581
           P+   E  L S P A+ +LVD + SPHLA+  FSIVR+ Q GN   V  RVG++L WPL
Sbjct: 7   PLNPREECLFSTPVAIVYLVDEQQSPHLATDYFSIVRITQKGNDSVVIVRVGEDLHWPL 65


>tr|A7P8A4|A7P8A4_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036107001
           PE=4 SV=1
          Length = 410

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 29/54 (53%), Positives = 38/54 (70%)
 Frame = +3

Query: 420 ETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 581
           E +LV V  A+ HL+D++ S  LASG  +IVRL Q  N +AV AR+G E+QWPL
Sbjct: 70  EEVLVRVSGAIVHLIDKQHSVELASGVLTIVRLRQGENVVAVLARIGDEIQWPL 123