BP912812
Clone id YMU001_000023_B07
Library
Length 575
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ACAATCCGTTGACCTTGACCAGTTCAATTATCGCCCATGCCTTCTGTTCAGTCTCCATAA
CTGCACGAGCTCTCTTACGACCTATCTTTTTCATTTGAGAAGTCGATACGCTCCCAGAAT
TTACAAGATCTGAGCGAAGCGTCAGATCCAAAAGTCCCATCACTCTTCACGACATCAAGT
ATACGGGCAGTTACATGATCTCCAACTTTGACTTCCAAGTCTAGTTGATGATGTGTCACA
AATCCAACAACATCCTTCAGATTCTGCACATTGACAATAACACCATATTCTTTGATATCT
TGTATTTCCCCTTCTATACTTTTCCCACACCAATATCTTTTCCCCATTCCAACTCCGCTC
CATCCGATTTGGAAGCTTGCAGTTCAGCAATCTTTTCCTCTTCAAGAAAATAACCCTTCA
AGAAGGTCGTGTCTGTAGAGTAGCAATGTGATTGCTTCAAAGATAAATTGAATCTCCCAG
CCAATAAATTTACCTCTAAAACCTTGGCTCGCACCGATTGTCCTACTGCAAAATGTTTGA
ATGGGCTATGCACAAAGCCATCCAGTAACTGTGGA
■■Homology search results ■■ -
sp_hit_id Q9JZ44
Definition sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
Align length 103
Score (bit) 31.6
E-value 0.039
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912812|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_B07.
(575 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria mening... 32 0.039
sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdc... 37 0.092
sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic OS=P... 37 0.092
sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium melilo... 29 0.14
sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDC... 35 0.35
sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD1... 34 0.46
sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexner... 31 0.81
sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli... 31 0.81
sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli... 31 0.81
sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli... 31 0.81
sp|P14128|RS1_PROSP 30S ribosomal protein S1 (Fragment) OS=Provi... 31 0.83
sp|Q86B09|PMM2_DICDI Phosphomannomutase 2 OS=Dictyostelium disco... 33 1.0
sp|O14638|ENPP3_HUMAN Ectonucleotide pyrophosphatase/phosphodies... 33 1.0
sp|P51345|RR1_PORPU 30S ribosomal protein S1, chloroplastic OS=P... 33 1.3
sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillu... 32 2.3
sp|Q6IRM9|ZWILC_XENLA Protein zwilch homolog OS=Xenopus laevis G... 32 3.0
sp|Q8KEF9|SYFB_CHLTE Phenylalanyl-tRNA synthetase beta chain OS=... 31 3.9
sp|Q57581|IF2A_METJA Translation initiation factor 2 subunit alp... 31 5.1
sp|A2AG58|CX023_MOUSE Uncharacterized protein CXorf23 homolog OS... 31 5.1
sp|O33698|RS1_SYNE7 30S ribosomal protein S1 OS=Synechococcus el... 30 6.6
sp|P56008|RS1_HELPY 30S ribosomal protein S1 OS=Helicobacter pyl... 30 6.6
sp|O74835|RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Schizosacch... 30 6.6
sp|Q3IUE5|SYV_NATPD Valyl-tRNA synthetase OS=Natronomonas pharao... 30 8.6
sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas... 30 8.6
sp|A7HCH7|RPOB_ANADF DNA-directed RNA polymerase subunit beta OS... 30 8.6
sp|Q5E7L1|PNP_VIBF1 Polyribonucleotide nucleotidyltransferase OS... 30 8.6
sp|A0LE14|PNP_MAGSM Polyribonucleotide nucleotidyltransferase OS... 30 8.6
sp|P80870|GS13_BACSU General stress protein 13 OS=Bacillus subti... 30 8.6

>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria
meningitidis serogroup B GN=rpsA PE=1 SV=1
Length = 561

Score = 31.6 bits (70), Expect(2) = 0.039
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Frame = -1

Query: 362 WSGVGMGKRYWCGKSIEGEIQDIKEYGVIVNVQNLKDVVGFVTHHQLDLE---------V 210
WSG + +RY G + G++ ++ +YG V ++ + + G V ++D V
Sbjct: 268 WSG--LTRRYPQGTRLFGKVSNLTDYGAFVEIE--QGIEGLVHVSEMDWTNKNVHPSKVV 323

Query: 209 KVGDHVTARILDVVKSDGTFGSDASLRSCKF--WERIDFSNEK 87
++GD V IL++ +G ++ C+ WE ++ K
Sbjct: 324 QLGDEVEVMILEI--DEGRRRISLGMKQCQANPWEEFAANHNK 364



Score = 25.4 bits (54), Expect(2) = 0.039
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2

Query: 553 VHSPFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQ 452
V P + VGQ V AKVL+ + R +L +KQ
Sbjct: 229 VKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQ 262


>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11
PE=2 SV=2
Length = 1862

Score = 36.6 bits (83), Expect = 0.092
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -2

Query: 562 DGFVHSPFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQSHCY---STDTTFL 419
D FV +P +HF GQ+V AKV V+ R LSL+ S C S T+FL
Sbjct: 763 DKFVTTPSEHFVEGQTVVAKVTNVDESKQRMLLSLRLSDCSLGDSASTSFL 813


>sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic
OS=Porphyra yezoensis GN=rps1 PE=3 SV=2
Length = 263

Score = 36.6 bits (83), Expect = 0.092
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = -1

Query: 326 GKSIEGEIQDIKEYGVIVNVQNLKDVV-----GFVTHHQLDLEVKVGDHVTARILDVVKS 162
G IEG I I YG+ + V NLK +V Q+ + K+GD + A I+ V K
Sbjct: 192 GNIIEGIINQITPYGLFIKVGNLKGLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKK 251

Query: 161 DG 156
G
Sbjct: 252 QG 253


>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti
GN=rpsA PE=3 SV=2
Length = 568

Score = 29.3 bits (64), Expect(2) = 0.14
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1

Query: 350 GMGKRYWCGKSIEGEIQDIKEYGVIVNVQ 264
G+G +Y GK I G + +I +YG V ++
Sbjct: 275 GIGAKYPVGKKISGTVTNITDYGAFVELE 303



Score = 25.8 bits (55), Expect(2) = 0.14
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2

Query: 553 VHSPFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQ 452
V+ P + +GQ V+ +++ +N R +L +KQ
Sbjct: 234 VNHPSEILNIGQQVKVQIIRINQETHRISLGMKQ 267


>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11
PE=1 SV=3
Length = 1871

Score = 34.7 bits (78), Expect = 0.35
Identities = 25/66 (37%), Positives = 32/66 (48%)
Frame = -2

Query: 562 DGFVHSPFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQSHCYSTDTTFLKGYFLEEEKIAE 383
D FV S HF GQ+V AKV V+ R LSL+ S C D + L + + E
Sbjct: 763 DKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLA-ITSLLLLNQCLEE 821

Query: 382 LQASKS 365
LQ +S
Sbjct: 822 LQGVRS 827


>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11
PE=2 SV=1
Length = 1874

Score = 34.3 bits (77), Expect = 0.46
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -2

Query: 568 LLDGFVHSPFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQSHC----YSTDTTFLKGYFLE 401
L D FV S HF GQ+V AKV V+ R LSL+ S C +T + L LE
Sbjct: 759 LSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLE 818

Query: 400 EEKIAELQASKSDGAELE 347
E + S D ++
Sbjct: 819 ERQGVRSLMSNRDSVLIQ 836


>sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexneri
GN=rpsA PE=3 SV=1
Length = 557

Score = 31.2 bits (69), Expect(2) = 0.81
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Frame = -1

Query: 353 VGMGKRYWCGKSIEGEIQDIKEYGVIVNVQNLKDVVGFVTHHQLDLE---------VKVG 201
V + KRY G + G + ++ +YG V ++ + V G V ++D V VG
Sbjct: 268 VAIAKRYPEGTKLTGRVTNLTDYGCFVEIE--EGVEGLVHVSEMDWTNKNIHPSKVVNVG 325

Query: 200 DHVTARILDVVKSDGTFGSDASLRSCKF--WERI-DFSNEKDR 81
D V +LD+ + L+ CK W++ + N+ DR
Sbjct: 326 DVVEVMVLDIDEERRRI--SLGLKQCKANPWQQFAETHNKGDR 366



Score = 21.2 bits (43), Expect(2) = 0.81
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2

Query: 553 VHSPFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQ 452
V P + VG + KVL+ + R +L LKQ
Sbjct: 228 VKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQ 261



Score = 30.0 bits (66), Expect = 8.6
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = -1

Query: 326 GKSIEGEIQDIKEYGVIVNVQ-------NLKDVVGFVTHHQLDLEVKVGDHVTARILDV 171
G +EG+I+ I ++G+ + + +L D+ V + E K GD + A +L V
Sbjct: 364 GDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQV 422


>sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli
(strain K12) GN=rpsA PE=1 SV=1
Length = 557

Score = 31.2 bits (69), Expect(2) = 0.81
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Frame = -1

Query: 353 VGMGKRYWCGKSIEGEIQDIKEYGVIVNVQNLKDVVGFVTHHQLDLE---------VKVG 201
V + KRY G + G + ++ +YG V ++ + V G V ++D V VG
Sbjct: 268 VAIAKRYPEGTKLTGRVTNLTDYGCFVEIE--EGVEGLVHVSEMDWTNKNIHPSKVVNVG 325

Query: 200 DHVTARILDVVKSDGTFGSDASLRSCKF--WERI-DFSNEKDR 81
D V +LD+ + L+ CK W++ + N+ DR
Sbjct: 326 DVVEVMVLDIDEERRRI--SLGLKQCKANPWQQFAETHNKGDR 366



Score = 21.2 bits (43), Expect(2) = 0.81
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2

Query: 553 VHSPFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQ 452
V P + VG + KVL+ + R +L LKQ
Sbjct: 228 VKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQ 261



Score = 30.0 bits (66), Expect = 8.6
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = -1

Query: 326 GKSIEGEIQDIKEYGVIVNVQ-------NLKDVVGFVTHHQLDLEVKVGDHVTARILDV 171
G +EG+I+ I ++G+ + + +L D+ V + E K GD + A +L V
Sbjct: 364 GDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQV 422


>sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli O6
GN=rpsA PE=3 SV=1
Length = 557

Score = 31.2 bits (69), Expect(2) = 0.81
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Frame = -1

Query: 353 VGMGKRYWCGKSIEGEIQDIKEYGVIVNVQNLKDVVGFVTHHQLDLE---------VKVG 201
V + KRY G + G + ++ +YG V ++ + V G V ++D V VG
Sbjct: 268 VAIAKRYPEGTKLTGRVTNLTDYGCFVEIE--EGVEGLVHVSEMDWTNKNIHPSKVVNVG 325

Query: 200 DHVTARILDVVKSDGTFGSDASLRSCKF--WERI-DFSNEKDR 81
D V +LD+ + L+ CK W++ + N+ DR
Sbjct: 326 DVVEVMVLDIDEERRRI--SLGLKQCKANPWQQFAETHNKGDR 366



Score = 21.2 bits (43), Expect(2) = 0.81
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2

Query: 553 VHSPFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQ 452
V P + VG + KVL+ + R +L LKQ
Sbjct: 228 VKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQ 261



Score = 30.0 bits (66), Expect = 8.6
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = -1

Query: 326 GKSIEGEIQDIKEYGVIVNVQ-------NLKDVVGFVTHHQLDLEVKVGDHVTARILDV 171
G +EG+I+ I ++G+ + + +L D+ V + E K GD + A +L V
Sbjct: 364 GDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQV 422


>sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli
O157:H7 GN=rpsA PE=3 SV=1
Length = 557

Score = 31.2 bits (69), Expect(2) = 0.81
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Frame = -1

Query: 353 VGMGKRYWCGKSIEGEIQDIKEYGVIVNVQNLKDVVGFVTHHQLDLE---------VKVG 201
V + KRY G + G + ++ +YG V ++ + V G V ++D V VG
Sbjct: 268 VAIAKRYPEGTKLTGRVTNLTDYGCFVEIE--EGVEGLVHVSEMDWTNKNIHPSKVVNVG 325

Query: 200 DHVTARILDVVKSDGTFGSDASLRSCKF--WERI-DFSNEKDR 81
D V +LD+ + L+ CK W++ + N+ DR
Sbjct: 326 DVVEVMVLDIDEERRRI--SLGLKQCKANPWQQFAETHNKGDR 366



Score = 21.2 bits (43), Expect(2) = 0.81
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2

Query: 553 VHSPFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQ 452
V P + VG + KVL+ + R +L LKQ
Sbjct: 228 VKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQ 261



Score = 30.0 bits (66), Expect = 8.6
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = -1

Query: 326 GKSIEGEIQDIKEYGVIVNVQ-------NLKDVVGFVTHHQLDLEVKVGDHVTARILDV 171
G +EG+I+ I ++G+ + + +L D+ V + E K GD + A +L V
Sbjct: 364 GDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQV 422


tr_hit_id A9SPX0
Definition tr|A9SPX0|A9SPX0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 77
Score (bit) 86.3
E-value 3.0e-36
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912812|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_B07.
(575 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SPX0|A9SPX0_PHYPA Predicted protein OS=Physcomitrella paten... 86 3e-36
tr|A7PW23|A7PW23_VITVI Chromosome chr8 scaffold_34, whole genome... 77 2e-22
tr|A3BHL4|A3BHL4_ORYSJ Putative uncharacterized protein OS=Oryza... 61 3e-18
tr|B8B884|B8B884_ORYSI Putative uncharacterized protein OS=Oryza... 61 3e-18
tr|Q7XB75|Q7XB75_ORYSJ Putative pre-rRNA processing protein RRP5... 61 3e-18
tr|Q9SF02|Q9SF02_ARATH Putative pre-rRNA processing protein, 5' ... 71 5e-11
tr|Q9LHM6|Q9LHM6_ARATH Pre-rRNA processing protein RRP5 OS=Arabi... 71 5e-11
tr|Q9C7B6|Q9C7B6_ARATH RRNA biogenesis protein, putative, 3' par... 71 5e-11
tr|Q010S4|Q010S4_OSTTA rRNA processing protein Rrp5 (ISS) OS=Ost... 40 3e-05
tr|A8IBR0|A8IBR0_CHLRE RNA binding rRNA processing protein OS=Ch... 47 7e-04
tr|A5AKW3|A5AKW3_VITVI Putative uncharacterized protein OS=Vitis... 47 7e-04
tr|B6K2R4|B6K2R4_SCHJP U3 snoRNP-associated protein Rrp5 OS=Schi... 34 0.055
tr|Q1NNS6|Q1NNS6_9DELT Ribosomal protein S1 OS=delta proteobacte... 33 0.058
tr|Q7NTK8|Q7NTK8_CHRVO 30S ribosomal protein S1 OS=Chromobacteri... 33 0.058
tr|Q1NPI0|Q1NPI0_9DELT Ribosomal protein S1 (Fragment) OS=delta ... 33 0.058
tr|A4S384|A4S384_OSTLU Predicted protein OS=Ostreococcus lucimar... 40 0.070
tr|B2IKW4|B2IKW4_BEII9 Ribosomal protein S1 OS=Beijerinckia indi... 33 0.096
tr|Q7NDT8|Q7NDT8_GLOVI Glr4144 protein OS=Gloeobacter violaceus ... 40 0.12
tr|Q82TD6|Q82TD6_NITEU Ribosomal protein S1:S1 RNA binding domai... 34 0.16
tr|Q0AIZ3|Q0AIZ3_NITEC SSU ribosomal protein S1P OS=Nitrosomonas... 34 0.21
tr|A5V0B5|A5V0B5_ROSS1 RNA binding S1 domain protein OS=Roseifle... 30 0.21
tr|B8EP59|B8EP59_METSI Ribosomal protein S1 OS=Methylocella silv... 32 0.27
tr|A2WBS0|A2WBS0_9BURK Ribosomal protein S1 OS=Burkholderia dolo... 31 0.34
tr|A2VRY7|A2VRY7_9BURK Ribosomal protein S1 OS=Burkholderia ceno... 31 0.34
tr|Q46Y53|Q46Y53_RALEJ SSU ribosomal protein S1P OS=Ralstonia eu... 32 0.34
tr|B2JF06|B2JF06_BURP8 Ribosomal protein S1 OS=Burkholderia phym... 31 0.34
tr|Q13VC4|Q13VC4_BURXL SSU ribosomal protein S1P OS=Burkholderia... 31 0.34
tr|B2T628|B2T628_BURPP Ribosomal protein S1 OS=Burkholderia phyt... 31 0.34
tr|B5WMW9|B5WMW9_9BURK Ribosomal protein S1 OS=Burkholderia sp. ... 31 0.34
tr|B1G2W0|B1G2W0_9BURK Ribosomal protein S1 OS=Burkholderia gram... 31 0.34

>tr|A9SPX0|A9SPX0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_133341 PE=4 SV=1
Length = 1785

Score = 86.3 bits (212), Expect(3) = 3e-36
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = -2

Query: 574 PQLLDGFVHSPFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQSHCYSTDTTFLKGYFLEEE 395
PQ+ D FV P HF+VGQSVRA+VLEV G+F+L LKQS C+STD + ++GYFLEE+
Sbjct: 670 PQVADEFVSDPSNHFSVGQSVRAQVLEVYHDTGKFSLCLKQSVCFSTDVSLIQGYFLEED 729

Query: 394 KIAELQASKSDGAELEW 344
KI E S+ ++LEW
Sbjct: 730 KIVE----ASEASDLEW 742



Score = 75.5 bits (184), Expect(3) = 3e-36
Identities = 36/56 (64%), Positives = 44/56 (78%)
Frame = -1

Query: 326 GKSIEGEIQDIKEYGVIVNVQNLKDVVGFVTHHQLDLEVKVGDHVTARILDVVKSD 159
G GE+Q+IK+YGVIV + N KDVVGFVTH+QL V+VGD V AR+LDVVK+D
Sbjct: 749 GACTGGEVQEIKDYGVIVKLPNYKDVVGFVTHYQLGTPVEVGDSVQARVLDVVKAD 804



Score = 34.7 bits (78), Expect(3) = 3e-36
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = -2

Query: 154 LLDLTLRSDLVNSGSVSTSQMKKIGRKRARAVM--ETEQKAWAIIELVK 14
++DLT+R +L+ +++ K+ +KR+ VM E QK A+IELVK
Sbjct: 806 IVDLTVRPELLQVNKHDSTKKKEKNKKRSHPVMALELHQKVSAVIELVK 854



Score = 37.0 bits (84), Expect = 0.77
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Frame = -2

Query: 571 QLLDGFVHSPFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQSHCYSTDTTF--------LK 416
++ D + KH+ VG VRA+VL+V+ R +L LK+S+ +T+T +K
Sbjct: 1354 EVADHYFKDIDKHYKVGDRVRARVLKVDNTKQRISLGLKESYFSNTETHVQPVTEEDDMK 1413

Query: 415 GYFLEEEKIAELQASKSDGAELE 347
E+E + + + S+ D + E
Sbjct: 1414 VTNEEDELVDDCEESEEDDVDEE 1436


>tr|A7PW23|A7PW23_VITVI Chromosome chr8 scaffold_34, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00025446001
PE=4 SV=1
Length = 1799

Score = 77.4 bits (189), Expect(2) = 2e-22
Identities = 38/67 (56%), Positives = 50/67 (74%)
Frame = -2

Query: 544 PFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQSHCYSTDTTFLKGYFLEEEKIAELQASKS 365
P + F +GQSVR+ +L+VN GR LSLKQS C STD +F++ YFL EEKIA+LQ S S
Sbjct: 700 PSEAFFIGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFIQEYFLLEEKIAKLQLSDS 759

Query: 364 DGAELEW 344
+ +EL+W
Sbjct: 760 EHSELKW 766



Score = 52.0 bits (123), Expect(2) = 2e-22
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = -1

Query: 326 GKSIEGEIQDIKEYGVIVNVQNLKDVVGFVTHHQLDLEVKVGDHVTARILDVVKSD 159
G IEG+I D K++GV+++ + DV GF+TH+QL E G V A +LDV K++
Sbjct: 773 GTVIEGKIHDAKDFGVVISFEKYNDVFGFITHYQLTAE--RGSTVQAVVLDVAKTE 826


>tr|A3BHL4|A3BHL4_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_022536 PE=4 SV=1
Length = 1912

Score = 60.8 bits (146), Expect(2) = 3e-18
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = -2

Query: 532 FAVGQSVRAKVLEVNLLAGRFNLSLKQSHCYSTDTTFLKGYFLEEEKIAELQASKSDGAE 353
F VGQSVR+ +L VN + R LSL+QS C S D +F++GYFL ++KI EL+ S +
Sbjct: 792 FYVGQSVRSHILNVNAESARVKLSLQQSMCSSADCSFVQGYFLLDQKITELKYSDPSSSF 851

Query: 352 LEW 344
+W
Sbjct: 852 HDW 854



Score = 54.7 bits (130), Expect(2) = 3e-18
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -1

Query: 326 GKSIEGEIQDIKEYGVIVNVQNLKDVVGFVTHHQL-DLEVKVGDHVTARILDVVKSDG 156
G +EGE+ I+EYGVI+N Q+ DVVG + HHQL D V+VG V ++D+ SDG
Sbjct: 861 GNLVEGEVGAIEEYGVILNFQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDL--SDG 916


>tr|B8B884|B8B884_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_25303 PE=4 SV=1
Length = 1848

Score = 60.8 bits (146), Expect(2) = 3e-18
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = -2

Query: 532 FAVGQSVRAKVLEVNLLAGRFNLSLKQSHCYSTDTTFLKGYFLEEEKIAELQASKSDGAE 353
F VGQSVR+ +L VN + R LSL+QS C S D +F++GYFL ++KI EL+ S +
Sbjct: 786 FYVGQSVRSHILNVNAESARVKLSLQQSMCSSADCSFVQGYFLLDQKITELKYSDPSSSF 845

Query: 352 LEW 344
+W
Sbjct: 846 HDW 848



Score = 54.7 bits (130), Expect(2) = 3e-18
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -1

Query: 326 GKSIEGEIQDIKEYGVIVNVQNLKDVVGFVTHHQL-DLEVKVGDHVTARILDVVKSDG 156
G +EGE+ I+EYGVI+N Q+ DVVG + HHQL D V+VG V ++D+ SDG
Sbjct: 855 GNLVEGEVGAIEEYGVILNFQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDL--SDG 910


>tr|Q7XB75|Q7XB75_ORYSJ Putative pre-rRNA processing protein RRP5
OS=Oryza sativa subsp. japonica GN=P0431A02.12 PE=4 SV=1
Length = 1668

Score = 60.8 bits (146), Expect(2) = 3e-18
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = -2

Query: 532 FAVGQSVRAKVLEVNLLAGRFNLSLKQSHCYSTDTTFLKGYFLEEEKIAELQASKSDGAE 353
F VGQSVR+ +L VN + R LSL+QS C S D +F++GYFL ++KI EL+ S +
Sbjct: 571 FYVGQSVRSHILNVNAESARVKLSLQQSMCSSADCSFVQGYFLLDQKITELKYSDPSSSF 630

Query: 352 LEW 344
+W
Sbjct: 631 HDW 633



Score = 54.7 bits (130), Expect(2) = 3e-18
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = -1

Query: 326 GKSIEGEIQDIKEYGVIVNVQNLKDVVGFVTHHQL-DLEVKVGDHVTARILDVVKSDG 156
G +EGE+ I+EYGVI+N Q+ DVVG + HHQL D V+VG V ++D+ SDG
Sbjct: 640 GNLVEGEVGAIEEYGVILNFQSHPDVVGLIEHHQLGDSSVEVGSSVKGLVIDL--SDG 695


>tr|Q9SF02|Q9SF02_ARATH Putative pre-rRNA processing protein, 5'
partial (Fragment) OS=Arabidopsis thaliana GN=F26K24.26
PE=4 SV=1
Length = 1111

Score = 70.9 bits (172), Expect = 5e-11
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 4/177 (2%)
Frame = -2

Query: 532 FAVGQSVRAKVLEVNLLAGRFNLSLKQSHCYSTDTTFLKGYFLEEEKIAELQASKSDGAE 353
F VGQSVRA +++VN R LSLKQS C S D +F++ YFL +EKI++LQ+S ++
Sbjct: 13 FFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSD 72

Query: 352 LEWXXXXXXXXXXXXXXXXXKNM-VLLSMCRI*RML--LDL*HIIN*TWKSKLEIM*LPV 182
W ++ V+++ I +L + H+ T + V
Sbjct: 73 CSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVN--AV 130

Query: 181 YLMS*RVMGLLDLTLRSDLVNSGSVSTSQMKKIGRKRA-RAVMETEQKAWAIIELVK 14
L R L+DL+LR +L+N+ + S K RKR +E Q+ A++E+VK
Sbjct: 131 VLDISRAERLVDLSLRPELLNNLTKEVSNSSKKKRKRGISKELEVHQRVSAVVEIVK 187


>tr|Q9LHM6|Q9LHM6_ARATH Pre-rRNA processing protein RRP5
OS=Arabidopsis thaliana PE=4 SV=1
Length = 1765

Score = 70.9 bits (172), Expect = 5e-11
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 4/177 (2%)
Frame = -2

Query: 532 FAVGQSVRAKVLEVNLLAGRFNLSLKQSHCYSTDTTFLKGYFLEEEKIAELQASKSDGAE 353
F VGQSVRA +++VN R LSLKQS C S D +F++ YFL +EKI++LQ+S ++
Sbjct: 667 FFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSD 726

Query: 352 LEWXXXXXXXXXXXXXXXXXKNM-VLLSMCRI*RML--LDL*HIIN*TWKSKLEIM*LPV 182
W ++ V+++ I +L + H+ T + V
Sbjct: 727 CSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVN--AV 784

Query: 181 YLMS*RVMGLLDLTLRSDLVNSGSVSTSQMKKIGRKRA-RAVMETEQKAWAIIELVK 14
L R L+DL+LR +L+N+ + S K RKR +E Q+ A++E+VK
Sbjct: 785 VLDISRAERLVDLSLRPELLNNLTKEVSNSSKKKRKRGISKELEVHQRVSAVVEIVK 841


>tr|Q9C7B6|Q9C7B6_ARATH RRNA biogenesis protein, putative, 3' partial;
75505-85642 (Fragment) OS=Arabidopsis thaliana
GN=T21B14.19 PE=4 SV=1
Length = 1396

Score = 70.9 bits (172), Expect = 5e-11
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 4/177 (2%)
Frame = -2

Query: 532 FAVGQSVRAKVLEVNLLAGRFNLSLKQSHCYSTDTTFLKGYFLEEEKIAELQASKSDGAE 353
F VGQSVRA +++VN R LSLKQS C S D +F++ YFL +EKI++LQ+S ++
Sbjct: 797 FFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQSSDITKSD 856

Query: 352 LEWXXXXXXXXXXXXXXXXXKNM-VLLSMCRI*RML--LDL*HIIN*TWKSKLEIM*LPV 182
W ++ V+++ I +L + H+ T + V
Sbjct: 857 CSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHHMGGATLVPGSVVN--AV 914

Query: 181 YLMS*RVMGLLDLTLRSDLVNSGSVSTSQMKKIGRKRA-RAVMETEQKAWAIIELVK 14
L R L+DL+LR +L+N+ + S K RKR +E Q+ A++E+VK
Sbjct: 915 VLDISRAERLVDLSLRPELLNNLTKEVSNSSKKKRKRGISKELEVHQRVSAVVEIVK 971


>tr|Q010S4|Q010S4_OSTTA rRNA processing protein Rrp5 (ISS)
OS=Ostreococcus tauri GN=Ot10g00010 PE=4 SV=1
Length = 1947

Score = 40.0 bits (92), Expect(2) = 3e-05
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = -1

Query: 326 GKSIEGEIQDIKEYGVIVNVQNLKDVVGFVTHHQL--DLEVKVGDHVTARILDVVKSDGT 153
G ++ + + KEYGV++++ + VG VT HQL +E + GD V +LDV + +G
Sbjct: 894 GTWMDVTVNETKEYGVLMDMAIDSNAVGLVTPHQLPESVEFESGDAVKCYVLDVSRREGV 953

Query: 152 FGSDASLRS 126
D +RS
Sbjct: 954 V--DMGMRS 960



Score = 31.2 bits (69), Expect(2) = 3e-05
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -2

Query: 571 QLLDGFVHSPFKHFAVGQSVRAKVLEVNLLAG--RFNLSLKQSHCYS--TDTTFLKGYFL 404
QL+DG F VG++V A VL V+ R +LSLK S S +D ++ +F
Sbjct: 807 QLVDGVSADIHDMFPVGKTVNALVLAVDTSTSPPRLSLSLKLSATSSPLSDAPLIRSFFN 866

Query: 403 EEEKIAELQASKSD 362
+ E + E A+ D
Sbjct: 867 DIELLDERVANADD 880


>tr|A8IBR0|A8IBR0_CHLRE RNA binding rRNA processing protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_165854 PE=4
SV=1
Length = 1280

Score = 47.0 bits (110), Expect = 7e-04
Identities = 30/71 (42%), Positives = 39/71 (54%)
Frame = -2

Query: 574 PQLLDGFVHSPFKHFAVGQSVRAKVLEVNLLAGRFNLSLKQSHCYSTDTTFLKGYFLEEE 395
PQL D FV +P + FA GQSVR V V+ RF + L+ S S+D +L YF E
Sbjct: 401 PQLSDVFVSNPRELFAEGQSVRCLVATVDAARQRFTVLLRPSATASSDAAYLIDYFRE-- 458

Query: 394 KIAELQASKSD 362
+A LQ + D
Sbjct: 459 -MAALQVLRGD 468