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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912814
Clone id YMU001_000023_B10
Library
Length 584
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAGGATCCACTCTTGGTTGCATAAGCTCTTCTAATTTCTCATAATGGCTTGACATACCT
CCATCATCTGACACTTGAAAGACATGAGCATCCTCATCCTTTTCCTCTTCAAGAAGTAAA
TAAGAGACATCAACTTCACTGTCAAAGCTAGAATTAGTAGTACTGCCCTCGTCAGTTGAT
TGCTCTCCACTTGAAGTGGAGTATTCTTCGTTCTCATCCTCTTCATCAATTTCTAGTGGC
AGGTTGTTGGTCATATCAAATTTCTTCTTACTTCCTTTCTTGTCATAGATAGTAATGGTT
CCATGTCCCCAATCCTGGATAACTCCCACTGCTCTCAGCCAAGGTCTCCCAAGAATAAGA
GGAAAAGCTCCAAGGCCCGCAGGCATGACATGACATGACAATTGACAAGTGTCTTGACAT
CAAATGCCTCTACTTCAAGGTTTTTGATAACTCCCAAACATTTGAATTTAGTATGATTGG
CCAACCGTATTTTAAACTTTGAGCCACCTGAAATGATAAGGCCCAACTTCTCCACAGAGG
ATTGTGTGATTACGCATATTTGGGCACCACCATCAATATAAGCC
■■Homology search results ■■ -
sp_hit_id Q14678
Definition sp|Q14678|KANK1_HUMAN KN motif and ankyrin repeat domain-containing protein 1 OS=Homo sapiens
Align length 67
Score (bit) 34.3
E-value 0.47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912814|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_B10.
         (584 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14678|KANK1_HUMAN KN motif and ankyrin repeat domain-contain...    34   0.47 
sp|Q4L4K6|GPMI_STAHJ 2,3-bisphosphoglycerate-independent phospho...    31   3.9  
sp|P49907|SEPP1_BOVIN Selenoprotein P OS=Bos taurus GN=SEPP1 PE=...    28   4.9  
sp|Q9UKJ3|GPTC8_HUMAN G patch domain-containing protein 8 OS=Hom...    30   6.7  
sp|Q6NUW5|AN32E_DANRE Acidic leucine-rich nuclear phosphoprotein...    30   6.7  
sp|P53573|ETFA_BRAJA Electron transfer flavoprotein subunit alph...    30   8.8  
sp|Q7JJ13|BRD2_MOUSE Bromodomain-containing protein 2 OS=Mus mus...    30   8.8  
sp|Q6CSX2|ATG1_KLULA Serine/threonine-protein kinase ATG1 OS=Klu...    30   8.8  

>sp|Q14678|KANK1_HUMAN KN motif and ankyrin repeat domain-containing
            protein 1 OS=Homo sapiens GN=KANK1 PE=2 SV=3
          Length = 1352

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -1

Query: 200  STSSGEQSTDEGSTTNSSFDSEVDVSYLLLEEEKDEDAHVFQVSDDGGMSS--HYEKLEE 27
            +TSS + S+DE S++ S  + +V + Y L EEE++ED       D  GM+   H   +E 
Sbjct: 1005 TTSSDDSSSDESSSSESDDECDV-IEYPLEEEEEEED------EDTRGMAEGHHAVNIEG 1057

Query: 26   LMQPRVD 6
            L   RV+
Sbjct: 1058 LKSARVE 1064


>sp|Q4L4K6|GPMI_STAHJ 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Staphylococcus haemolyticus
           (strain JCSC1435) GN=gpmI PE=3 SV=1
          Length = 505

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -1

Query: 146 FDSEVDVSYLLLEEEKDEDAHVFQVSDDGGMSSHYEKLEELMQ 18
           F+++V  + +    E D   HVF +  DGG+ SHY+ L  L++
Sbjct: 92  FENDVLNNAVQHVNEHDSALHVFGLLSDGGVHSHYQHLFALLE 134


>sp|P49907|SEPP1_BOVIN Selenoprotein P OS=Bos taurus GN=SEPP1 PE=2
           SV=2
          Length = 402

 Score = 27.7 bits (60), Expect(2) = 4.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 83  HEHPHPFPLQEVNKRHQLH 139
           H HPHP P    +  HQLH
Sbjct: 216 HPHPHPHPHPHPHHGHQLH 234



 Score = 21.9 bits (45), Expect(2) = 4.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 77  ERHEHPHP 100
           +RH HPHP
Sbjct: 202 QRHHHPHP 209


>sp|Q9UKJ3|GPTC8_HUMAN G patch domain-containing protein 8 OS=Homo
            sapiens GN=GPATCH8 PE=1 SV=1
          Length = 1089

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 83   HEHPHPFPLQEVNKRHQLHCQS*N**YCPRQLIALHLKWSILRSHPLH 226
            H HPHP PL +V+   Q H    +  +    +I  H   + L SHP+H
Sbjct: 981  HPHPHPQPLAQVHHIPQPHLTPISLSHLTHSIIPGH-PATFLASHPIH 1027


>sp|Q6NUW5|AN32E_DANRE Acidic leucine-rich nuclear phosphoprotein 32
           family member E OS=Danio rerio GN=anp32e PE=1 SV=1
          Length = 250

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -1

Query: 188 GEQSTDEGSTTNSSFDSEVDVSYLL---LEEEKDEDAHVFQVSDDGG 57
           GE   +E      S   EV +SYL+   +++E+D+D +V +  ++GG
Sbjct: 177 GEYEEEEEEDEEGSEGGEVGLSYLMKEDIQDEEDDDDYVEEEEEEGG 223


>sp|P53573|ETFA_BRAJA Electron transfer flavoprotein subunit alpha
           OS=Bradyrhizobium japonicum GN=etfA PE=3 SV=2
          Length = 314

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -1

Query: 125 SYLLLEEEKDEDAHVFQVSDDGGMSSHYEKLEEL 24
           S +++   KDEDA +FQV+D G ++  Y+ + EL
Sbjct: 272 SKVIVAINKDEDAPIFQVADYGLVADLYQAVPEL 305


>sp|Q7JJ13|BRD2_MOUSE Bromodomain-containing protein 2 OS=Mus
           musculus GN=Brd2 PE=1 SV=1
          Length = 798

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = -1

Query: 194 SSGEQSTDEGSTTNSSFDSEVDVSYLLLEEEKDEDAHVFQVSDDGGMSSHYEKLEELMQ 18
           SS E S++E S+ +SS + E        EEE+DED    + SD     +H  +L EL +
Sbjct: 475 SSSESSSEESSSESSSEEEE--------EEEEDEDEEESESSDSEEERAH--RLAELQE 523


>sp|Q6CSX2|ATG1_KLULA Serine/threonine-protein kinase ATG1
           OS=Kluyveromyces lactis GN=ATG1 PE=3 SV=1
          Length = 831

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 35/161 (21%), Positives = 68/161 (42%)
 Frame = -2

Query: 523 GLIISGGSKFKIRLANHTKFKCLGVIKNLEVEAFDVKTLVNCHVMSCLRAXXXXXXXXXX 344
           GL +  G    I+  + +K K   +++NLEVE   +K + + H++  +            
Sbjct: 38  GLSLRDGRNIAIKAVSRSKLKNKKLLENLEVEIAILKKIKHPHIVGLIDCERTSSDFYLI 97

Query: 343 XXXEQWELSRIGDMEPLLSMTRKEVRRNLI*PTTCH*KLMKRMRTKNTPLQVESNQLTRA 164
                 E   +GD+   +     + R+NL+        L+K +     P   E N L R 
Sbjct: 98  -----MEYCALGDLTFFI-----KKRKNLV----LKHPLIKTVFEHYPPPSTEHNGLNR- 142

Query: 163 VLLILALTVKLMSLIYFLKRKRMRMLMSFKCQMMEVCQAIM 41
            +L++    +L S + FL+ K + +    K Q + +C  ++
Sbjct: 143 -VLVVNYLQQLSSALKFLRSKNL-VHRDIKPQNLLLCTPLL 181
tr_hit_id Q9XH31
Definition tr|Q9XH31|Q9XH31_ARATH Putative athila transposon protein OS=Arabidopsis thaliana
Align length 40
Score (bit) 38.9
E-value 0.21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912814|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_B10.
         (584 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9XH31|Q9XH31_ARATH Putative athila transposon protein OS=Ara...    39   0.21 
tr|A8NA81|A8NA81_COPC7 Putative uncharacterized protein OS=Copri...    37   0.81 
tr|A8ND48|A8ND48_COPC7 Putative uncharacterized protein OS=Copri...    32   0.92 
tr|A8PHN6|A8PHN6_COPC7 Putative uncharacterized protein OS=Copri...    36   1.4  
tr|Q7FZS3|Q7FZS3_ARATH F28D6.7 protein (AT4g07370 protein) OS=Ar...    36   1.8  
tr|B6KQ73|B6KQ73_TOXGO Transcription elongation factor FACT 140 ...    36   1.8  
tr|A8PF27|A8PF27_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8PEB4|A8PEB4_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8PD50|A8PD50_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8P1P4|A8P1P4_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8NZ82|A8NZ82_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8NMX5|A8NMX5_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8NM19|A8NM19_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8NKR4|A8NKR4_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8NJZ4|A8NJZ4_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8NJ89|A8NJ89_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8NE39|A8NE39_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8ND31|A8ND31_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8NAL5|A8NAL5_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|A8MZX2|A8MZX2_COPC7 Putative uncharacterized protein OS=Copri...    36   1.8  
tr|Q9FZN9|Q9FZN9_ARATH Retroelement pol polyprotein-like OS=Arab...    35   2.4  
tr|A9RX24|A9RX24_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|B0YF94|B0YF94_ASPFC Putative uncharacterized protein OS=Asper...    35   2.4  
tr|A8NAU6|A8NAU6_COPC7 Putative uncharacterized protein OS=Copri...    35   2.4  
tr|A3HZR8|A3HZR8_9SPHI Putative uncharacterized protein OS=Algor...    35   3.1  
tr|O65224|O65224_ARATH F7N22.7 protein OS=Arabidopsis thaliana G...    35   3.1  
tr|A8P0M8|A8P0M8_COPC7 Putative uncharacterized protein OS=Copri...    35   4.0  
tr|Q9SHR4|Q9SHR4_ARATH F28L22.4 protein OS=Arabidopsis thaliana ...    34   5.2  
tr|Q9LPB9|Q9LPB9_ARATH T32E20.1 OS=Arabidopsis thaliana PE=4 SV=1      34   5.2  
tr|B3MRE2|B3MRE2_DROAN GF21012 OS=Drosophila ananassae GN=GF2101...    34   5.2  

>tr|Q9XH31|Q9XH31_ARATH Putative athila transposon protein
           OS=Arabidopsis thaliana GN=F10A2.16 PE=2 SV=1
          Length = 683

 Score = 38.9 bits (89), Expect = 0.21
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = -1

Query: 371 GAFPLILGRPWLRAVGVIQDWGHGTITIYDKKGSKKKFDM 252
           G  PLILGRP+L + G + D  +G I +  +KG K KFD+
Sbjct: 444 GKDPLILGRPFLASAGAVIDVRNGKINLNLEKGIKMKFDI 483


>tr|A8NA81|A8NA81_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_08339 PE=4 SV=1
          Length = 246

 Score = 37.0 bits (84), Expect = 0.81
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -1

Query: 380 AGLGAFPLILGRPWLRAVGVIQDWGHGTITIYDKKGSKKKFDMTNNLPL 234
           A LG   +ILG PWLR +    DW +GT+ +  K  S  +  +    PL
Sbjct: 67  ADLGGEDIILGLPWLRKINPTIDWRNGTLQVPSKVSSMPRLILPLRPPL 115


>tr|A8ND48|A8ND48_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_08526 PE=4 SV=1
          Length = 1312

 Score = 32.3 bits (72), Expect(2) = 0.92
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = -2

Query: 583 AYIDGGAQICVITQSSVEKLGLIISGGSKFKIRLANHTKFKCLGVIKNLEVEAFDVKTLV 404
           A +D G+++ VI  +   +LGL I+   +  +  AN T+   +G ++ +E+    VKT  
Sbjct: 211 ATLDDGSELVVIRLAKAVELGLEINYKRRLTMEAANGTQGSMVGCVEWMEIVVDGVKTWA 270

Query: 403 NCHVM 389
           +  V+
Sbjct: 271 HAFVI 275



 Score = 23.5 bits (49), Expect(2) = 0.92
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 365 FPLILGRPWLRAV 327
           + L+LGRPW +AV
Sbjct: 280 YDLLLGRPWQKAV 292


>tr|A8PHN6|A8PHN6_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_12681 PE=4 SV=1
          Length = 500

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
 Frame = -1

Query: 359 LILGRPWLRAVGVIQDWGHGTITIYDKKGSKKKFDMTNNLPLXXXXXXXXXEYSTSS--G 186
           LILG PWLR    I DW  GT+   DK    K   + N+LP            +      
Sbjct: 41  LILGLPWLRRANPIIDWKKGTLDWQDKIDPGK---IENHLPRTNLSTPNTTTVAVMCLLE 97

Query: 185 EQSTDEGSTTNSSFDSEVDVSYLLLEEEKDEDAHVFQVSDDGGMSSHYEKLEELMQPR 12
           +++ +EG T     +++   + LL  +E+++     + + D  +   Y+K   L + R
Sbjct: 98  DETDEEGETPVVWINAKTTTAQLLAAQEQEKKE---KKTIDDILPEPYKKYRHLFEDR 152


>tr|Q7FZS3|Q7FZS3_ARATH F28D6.7 protein (AT4g07370 protein)
           OS=Arabidopsis thaliana GN=F28D6.7 PE=2 SV=1
          Length = 531

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = -1

Query: 362 PLILGRPWLRAVGVIQDWGHGTITIYDKKGSKKKFDMTN 246
           PLILGRP+L  VGVI D   G I +   K  + KFD+ +
Sbjct: 304 PLILGRPFLATVGVIIDVKQGKIDLNLGKNFEMKFDIND 342


>tr|B6KQ73|B6KQ73_TOXGO Transcription elongation factor FACT 140 kDa,
            putative OS=Toxoplasma gondii ME49 GN=TGME49_021670 PE=4
            SV=1
          Length = 1198

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 203  YSTSSGEQSTD--EGSTTNSSFDSEVDVSYLLLEEEKDEDAHVFQVSDDGGMSSHYEKLE 30
            Y+  SGE+  D  EGS+   S DS+ D S   L +E DED     VS D      +++LE
Sbjct: 1115 YNERSGEEEEDGEEGSSEEDSSDSDDDES---LADESDEDEEYNDVSSDEEEGLSWDELE 1171

Query: 29   E 27
            E
Sbjct: 1172 E 1172


>tr|A8PF27|A8PF27_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_03137 PE=4 SV=1
          Length = 184

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 380 AGLGAFPLILGRPWLRAVGVIQDWGHGTITIYDKKGS 270
           A LG   +ILG PWLR +    DW +GT+ +  K  S
Sbjct: 67  ADLGGEDIILGLPWLRKINPTIDWRNGTLQVPSKVSS 103


>tr|A8PEB4|A8PEB4_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_10377 PE=4 SV=1
          Length = 1153

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 380 AGLGAFPLILGRPWLRAVGVIQDWGHGTITIYDKKGS 270
           A LG   +ILG PWLR +    DW +GT+ +  K  S
Sbjct: 67  ADLGGEDIILGLPWLRKINPTIDWRNGTLQVPSKVSS 103


>tr|A8PD50|A8PD50_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_07262 PE=4 SV=1
          Length = 1835

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 380 AGLGAFPLILGRPWLRAVGVIQDWGHGTITIYDKKGS 270
           A LG   +ILG PWLR +    DW +GT+ +  K  S
Sbjct: 707 ADLGGEDIILGLPWLRKINPTIDWRNGTLQVPSKVSS 743


>tr|A8P1P4|A8P1P4_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_05626 PE=4 SV=1
          Length = 1156

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 380 AGLGAFPLILGRPWLRAVGVIQDWGHGTITIYDKKGS 270
           A LG   +ILG PWLR +    DW +GT+ +  K  S
Sbjct: 67  ADLGGEDIILGLPWLRKINPTIDWRNGTLQVPSKVSS 103