BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912816|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_C01.
         (492 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2S4Q4|ISPE_SALRD 4-diphosphocytidyl-2-C-methyl-D-erythritol ...    30   4.6  
sp|Q6ZGL4|ATG5_ORYSJ Autophagy protein 5 OS=Oryza sativa subsp. ...    30   7.9  

>sp|Q2S4Q4|ISPE_SALRD 4-diphosphocytidyl-2-C-methyl-D-erythritol
           kinase OS=Salinibacter ruber (strain DSM 13855) GN=ispE
           PE=3 SV=2
          Length = 284

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -1

Query: 162 KLPFTLAIQCPTICNFKKWSY*RPTKCQARS*AKLRLMLDYSNSLSTW 19
           +LPF+L I  P+      W+Y R T  +A      RL+L  SN LS W
Sbjct: 165 RLPFSLLIAVPSAEIATPWAYDRVTPAEANRPDLRRLVL--SNDLSRW 210


>sp|Q6ZGL4|ATG5_ORYSJ Autophagy protein 5 OS=Oryza sativa subsp.
           japonica GN=ATG5 PE=2 SV=1
          Length = 380

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
 Frame = -1

Query: 414 LPLGSHRSSDHLSSLGPHPK-VQCGPTVGYFLLVIPP*LYAFIEFTS*YPPTC*VRRGDL 238
           +PL  H     +++L P P  +  GP +GY  L++P        F+S  PP       + 
Sbjct: 24  VPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVP---IIKAHFSSTLPPGIDTVWFEY 80

Query: 237 HDLGLS--LAILLLYELQCRSTSRLRVKLPFTLAI-------QCPTICNFK---KWSY 100
             L L   + I +LY+L C    R     P+ L +       +  T+C+ +   KWSY
Sbjct: 81  KGLPLKWYIPIGVLYDLLCADPER-----PWNLTVHFRGYPSEILTLCDGEDSVKWSY 133

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912816|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_C01.
         (492 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q92YW8|Q92YW8_RHIME ABC transporter, permease OS=Rhizobium me...    33   5.5  

>tr|Q92YW8|Q92YW8_RHIME ABC transporter, permease OS=Rhizobium
           meliloti GN=RA0745 PE=3 SV=1
          Length = 466

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 126 WSDIVWPM*MVVSPADGKLIGIGVRIVRGWLGSAQGHVG 242
           W+D  WP+ ++ SP +   I +G+  +R   G  QG  G
Sbjct: 394 WNDFFWPLVLITSPPEALTIQVGLLSLRRSFGGVQGDWG 432