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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912819
Clone id YMU001_000023_C04
Library
Length 463
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTGGTTTAACTTGTTTGTTTTCAGAATCAAGACTAGTTCTAAGATAGAACATT
TGCTCTCCTTAGCATAAAGATTTGGTGAGTGAACACAGTTTGAGATGTACCTTCAACCAA
GTTAAATTTCCTACACATTGAAGCATCTCAGATGTGCTATTGTTCAATGGTGCCAATAGT
GAAGGAGTTAGCTGATCTTCAAGAATGTCAATTCAATCGGGATCTCAGACCTTCAAGTGT
GAAATAACTAGATATTCCCAAGATCTGGCAAGGAAACTTACGCTCTTCTTTGTAGATCCA
CACCAAGCGATTTCACACAACGGCAATTTGAGAAAGTCTGTTTCATTGATTAACCAGAGG
ATCTTATGATAATCTGGCAACAATCAACTATGACATGTCCTCAAGGGACATGGCATGAAA
AGACTTTTTACTCCTCAGAGGGGAAACTTGATTCCTGCCCCAG
■■Homology search results ■■ -
sp_hit_id Q15I80
Definition sp|Q15I80|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans
Align length 61
Score (bit) 30.4
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912819|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_C04.
         (463 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15I80|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box prote...    30   3.8  

>sp|Q15I80|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein
           grrA OS=Emericella nidulans GN=grrA PE=2 SV=1
          Length = 585

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +3

Query: 270 KETYALLCRSTPSDFTQRQFEKVCFID*PEDLMIIWQQSTMTCPQGTWHEKTFYSSEGKL 449
           +E   + CR  P +FT++Q E  C         +    +    PQ   +E T Y  E +L
Sbjct: 497 REELTVFCREAPPEFTRQQREVFCVFSGEGVNRLRNHLNREAAPQRDANEATMYDDEEEL 556

Query: 450 D 452
           D
Sbjct: 557 D 557
tr_hit_id A0YYQ3
Definition tr|A0YYQ3|A0YYQ3_9CYAN Putative uncharacterized protein OS=Lyngbya sp. PCC 8106
Align length 52
Score (bit) 32.7
E-value 9.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912819|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_C04.
         (463 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0YYQ3|A0YYQ3_9CYAN Putative uncharacterized protein OS=Lyngb...    33   9.1  

>tr|A0YYQ3|A0YYQ3_9CYAN Putative uncharacterized protein OS=Lyngbya
           sp. PCC 8106 GN=L8106_29400 PE=4 SV=1
          Length = 308

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = +2

Query: 137 IEASQMCYCSMVPIVKELADLQECQFNRDLRPSSVK*LDIPKIWQGNLRSSL 292
           +EA Q    ++ P + ELA+L E ++N     S+++ +  PK+WQ N R +L
Sbjct: 255 VEAFQPYPGNIAPKLSELAELSEEKWNEQFTASALRRIK-PKMWQRNARKNL 305