NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912821
Clone id YMU001_000023_C06
Library
Length 581
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCCCACATGATATGCTGCCTATATCTACCTTAATCACCTAATCATTTTTTGTATTTGCT
TCGCATTCTGACTCCCATCATAAATCCCAACTACCATGCTACCATCCGACTCAAAACCCG
AATCAATGACAGCTCTCCCTGTCAATCTGATCATCTGCTTCATCTTCTGGGTATGCCTCT
GAATACATACCCCAGTCCCCTTTGGATTCCCTATATAAATCATCGTCCGTCACTGAGGTA
CTACGCATCGGCTTCTCCTTTCCATTGTCACGTGGCTCAAGTTGTGCGCCCTCGTCTACA
TCACAATCTTGCTCCATCTCATCTGCATCGCTGAACTCCTATGATGGTGAATCACTCTCT
CCANGGCTGGATATGGTGGTAGCCCCATAATCCTCCTGTCTTCCACTCCACTGCCGATGG
TGAAGTGGTATAACCTTTGGAACTCCTTTCCCTCCAGACCAAGAATGTCATGCAATCACA
GAATAACGTCATATCCCAGTCGTTGAGATGCTAGTTTCATGAGCCCGATGATACAGTACT
TGTCCAAGAACTCCTGACTCCCAAAACAGTCGTGTATACAT
■■Homology search results ■■ -
sp_hit_id Q3V0I2
Definition sp|Q3V0I2|PRR7_MOUSE Proline-rich protein 7 OS=Mus musculus
Align length 48
Score (bit) 33.1
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912821|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_C06.
         (581 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3V0I2|PRR7_MOUSE Proline-rich protein 7 OS=Mus musculus GN=P...    33   1.0  
sp|P11289|YFIL_ECOLI Uncharacterized protein yfiL OS=Escherichia...    32   3.0  
sp|Q62735|NR1H4_RAT Bile acid receptor OS=Rattus norvegicus GN=N...    31   3.9  
sp|Q60641|NR1H4_MOUSE Bile acid receptor OS=Mus musculus GN=Nr1h...    31   3.9  
sp|Q91ZW2|OFUT1_MOUSE GDP-fucose protein O-fucosyltransferase 1 ...    31   5.1  
sp|P0C6T3|PRR7_RAT Proline-rich protein 7 OS=Rattus norvegicus G...    30   8.7  

>sp|Q3V0I2|PRR7_MOUSE Proline-rich protein 7 OS=Mus musculus GN=Prr7
           PE=2 SV=1
          Length = 269

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +2

Query: 254 SPFHCHVAQVVRPRLHHNLAPSHLHR*TPMMVNHSLXGWIWW*PHNPP 397
           +P H H    V P LHH  AP H H   P   +H+L       PH PP
Sbjct: 85  APVHAHSHVHVHPLLHHGPAPPHAH---PHPHHHAL-------PHPPP 122


>sp|P11289|YFIL_ECOLI Uncharacterized protein yfiL OS=Escherichia
           coli (strain K12) GN=yfiL PE=4 SV=3
          Length = 121

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 269 DNGKEKPMRSTSVTDDDLYRESKGDWGMYSEAYPEDE 159
           D G E  +  +++ DDD + +S+ D G+Y + Y E +
Sbjct: 35  DVGMEDAISGSAIKDDDAFSDSQADRGLYLKGYAEGQ 71


>sp|Q62735|NR1H4_RAT Bile acid receptor OS=Rattus norvegicus
           GN=Nr1h4 PE=1 SV=1
          Length = 469

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 11  ICCLYLP*SPNHFLYLLRILTPIINPN-YHATIRLKTRIND 130
           +C +Y P +P HF  LL  LT +   N +HA + +  R+ND
Sbjct: 415 LCKIYQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVND 455


>sp|Q60641|NR1H4_MOUSE Bile acid receptor OS=Mus musculus GN=Nr1h4
           PE=1 SV=2
          Length = 488

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 11  ICCLYLP*SPNHFLYLLRILTPIINPN-YHATIRLKTRIND 130
           +C +Y P +P HF  LL  LT +   N +HA + +  R+ND
Sbjct: 434 LCKMYQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVND 474


>sp|Q91ZW2|OFUT1_MOUSE GDP-fucose protein O-fucosyltransferase 1
           OS=Mus musculus GN=Pofut1 PE=2 SV=1
          Length = 393

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
 Frame = +2

Query: 143 QSDHLLHLLGMP--LN-TYPSPLWIPYINHRP-------SLRYYASASPFHCHVAQVVRP 292
           Q+DH L  L     LN T   P WI Y +H+P       S + Y    P   +   V   
Sbjct: 52  QADHFLGSLAFAKLLNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVVSLE 111

Query: 293 RLHHNLAPSH 322
               NLAPSH
Sbjct: 112 DFMENLAPSH 121


>sp|P0C6T3|PRR7_RAT Proline-rich protein 7 OS=Rattus norvegicus
           GN=Prr7 PE=1 SV=1
          Length = 269

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +2

Query: 254 SPFHCHVAQVVRPRLHHNLAPSHLHR*TPMMVNHSLXGWIWW*PHNPP 397
           +P H H    V P LHH  A  H H   P   +H+L       PH PP
Sbjct: 85  APVHAHSHVHVHPLLHHGPAQPHAH---PHPHHHAL-------PHPPP 122
tr_hit_id O23673
Definition tr|O23673|O23673_ARATH T7I23.2 protein (Putative uncharacterized protein At1g02020) OS=Arabidopsis thaliana
Align length 36
Score (bit) 50.1
E-value 8.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912821|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_C06.
         (581 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O23673|O23673_ARATH T7I23.2 protein (Putative uncharacterized...    50   8e-13
tr|A9RNQ9|A9RNQ9_PHYPA Predicted protein (Fragment) OS=Physcomit...    51   4e-12
tr|Q56WX7|Q56WX7_ARATH Putative uncharacterized protein At1g0202...    47   5e-12
tr|A7C3J4|A7C3J4_9GAMM Putative uncharacterized protein OS=Beggi...    47   1e-09
tr|A1K7U0|A1K7U0_AZOSB Putative uncharacterized protein OS=Azoar...    54   3e-09
tr|Q9HX73|Q9HX73_PSEAE Putative uncharacterized protein OS=Pseud...    44   5e-08
tr|Q02SB2|Q02SB2_PSEAB Putative uncharacterized protein OS=Pseud...    44   5e-08
tr|A5EDW1|A5EDW1_BRASB Putative uncharacterized protein OS=Brady...    46   8e-08
tr|O67067|O67067_AQUAE Putative uncharacterized protein OS=Aquif...    47   8e-08
tr|B7VAI0|B7VAI0_PSEAE Putative uncharacterized protein OS=Pseud...    44   1e-07
tr|A3LF41|A3LF41_PSEAE Putative uncharacterized protein OS=Pseud...    44   1e-07
tr|A3KYJ7|A3KYJ7_PSEAE Putative uncharacterized protein OS=Pseud...    44   1e-07
tr|B8ELT7|B8ELT7_METSI Nitroreductase OS=Methylocella silvestris...    48   1e-07
tr|Q5NWK0|Q5NWK0_AZOSE Putative uncharacterized protein OS=Azoar...    50   2e-07
tr|B1K9H3|B1K9H3_BURCC Putative uncharacterized protein OS=Burkh...    42   3e-07
tr|B3DX21|B3DX21_METI4 Nitroreductase OS=Methylacidiphilum infer...    45   4e-07
tr|A1SX74|A1SX74_PSYIN Putative uncharacterized protein OS=Psych...    42   5e-07
tr|A6V0G5|A6V0G5_PSEA7 Putative uncharacterized protein OS=Pseud...    41   6e-07
tr|B2IES9|B2IES9_BEII9 Rhodanese domain protein OS=Beijerinckia ...    44   8e-07
tr|A7IBL2|A7IBL2_XANP2 Putative uncharacterized protein OS=Xanth...    44   8e-07
tr|B5ER57|B5ER57_ACIF5 Putative uncharacterized protein OS=Acidi...    45   1e-06
tr|B7JA80|B7JA80_THIFE Nitroreductase, putative OS=Acidithiobaci...    45   1e-06
tr|Q47G60|Q47G60_DECAR Putative uncharacterized protein OS=Dechl...    47   2e-06
tr|A4XYQ2|A4XYQ2_PSEMY Putative uncharacterized protein OS=Pseud...    39   4e-06
tr|A7PYD6|A7PYD6_VITVI Chromosome chr15 scaffold_37, whole genom...    54   8e-06
tr|B6BLY1|B6BLY1_9PROT Nitroreductase OS=Campylobacterales bacte...    40   1e-05
tr|Q8LMV1|Q8LMV1_ORYSJ Putative uncharacterized protein OSJNBa00...    53   1e-05
tr|B8BG17|B8BG17_ORYSI Putative uncharacterized protein OS=Oryza...    53   1e-05
tr|A8IIR5|A8IIR5_AZOC5 Putative uncharacterized protein OS=Azorh...    51   5e-05
tr|Q4J073|Q4J073_AZOVI Nitroreductase family protein OS=Azotobac...    43   6e-05

>tr|O23673|O23673_ARATH T7I23.2 protein (Putative uncharacterized
           protein At1g02020) OS=Arabidopsis thaliana GN=At1g02020
           PE=2 SV=1
          Length = 642

 Score = 50.1 bits (118), Expect(2) = 8e-13
 Identities = 20/36 (55%), Positives = 26/36 (72%)
 Frame = -2

Query: 475 LHDILGLEGKEFQRLYHFTIGSGVEDRRIMGLPPYP 368
           +H++LG+    FQ LYHFT+G  V D+RIM LP YP
Sbjct: 600 VHEVLGINDSSFQSLYHFTVGGPVVDKRIMTLPAYP 635



 Score = 47.0 bits (110), Expect(2) = 8e-13
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = -1

Query: 581 MYTRLFWESGVLGQVLYHRAHETSISTTGI 492
           MY RLFWE+GV+GQVLY  AH   IS TGI
Sbjct: 563 MYPRLFWETGVVGQVLYLEAHAMGISATGI 592


>tr|A9RNQ9|A9RNQ9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_21437 PE=4 SV=1
          Length = 562

 Score = 51.2 bits (121), Expect(2) = 4e-12
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = -2

Query: 475 LHDILGLEGKEFQRLYHFTIGSGVEDRRIMGLPPYPA 365
           +H +LGL+  +FQ LYHFTIG  VED+RI  +P YPA
Sbjct: 525 VHTVLGLKDNKFQSLYHFTIGVPVEDKRIQTVPSYPA 561



 Score = 43.5 bits (101), Expect(2) = 4e-12
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = -1

Query: 581 MYTRLFWESGVLGQVLYHRAHETSISTTGI 492
           MY RLFWE+G++GQ+LY  AH   +S TGI
Sbjct: 488 MYPRLFWETGLIGQMLYLEAHAFGVSGTGI 517


>tr|Q56WX7|Q56WX7_ARATH Putative uncharacterized protein At1g02020
           OS=Arabidopsis thaliana GN=At1g02020 PE=2 SV=1
          Length = 221

 Score = 47.4 bits (111), Expect(2) = 5e-12
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -2

Query: 475 LHDILGLEGKEFQRLYHFTIGSGVEDRRIMGLPPY 371
           +H++LG+    FQ LYHFT+G  V D+RIM LP Y
Sbjct: 179 VHEVLGINDSSFQSLYHFTVGGPVVDKRIMTLPAY 213



 Score = 47.0 bits (110), Expect(2) = 5e-12
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = -1

Query: 581 MYTRLFWESGVLGQVLYHRAHETSISTTGI 492
           MY RLFWE+GV+GQVLY  AH   IS TGI
Sbjct: 142 MYPRLFWETGVVGQVLYLEAHAMGISATGI 171


>tr|A7C3J4|A7C3J4_9GAMM Putative uncharacterized protein
           OS=Beggiatoa sp. PS GN=BGP_3028 PE=4 SV=1
          Length = 335

 Score = 47.0 bits (110), Expect(2) = 1e-09
 Identities = 19/39 (48%), Positives = 27/39 (69%)
 Frame = -2

Query: 475 LHDILGLEGKEFQRLYHFTIGSGVEDRRIMGLPPYPAXE 359
           +H +LGL    +Q LYHFTIG+ ++D+R+  LPPY   E
Sbjct: 294 VHHLLGLNDTRYQSLYHFTIGTPLDDKRLQTLPPYAHLE 332



 Score = 39.3 bits (90), Expect(2) = 1e-09
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = -1

Query: 578 YTRLFWESGVLGQVLYHRAHETSISTTGI*RYSVIA*HSWSG 453
           Y RLFWE+G++GQ+LY  A    +  TGI  Y   A H   G
Sbjct: 258 YRRLFWEAGIIGQILYLEAEAVGVRGTGIGCYFDDAVHHLLG 299


>tr|A1K7U0|A1K7U0_AZOSB Putative uncharacterized protein OS=Azoarcus
           sp. (strain BH72) GN=azo2278 PE=4 SV=1
          Length = 584

 Score = 53.5 bits (127), Expect(2) = 3e-09
 Identities = 22/39 (56%), Positives = 29/39 (74%)
 Frame = -2

Query: 475 LHDILGLEGKEFQRLYHFTIGSGVEDRRIMGLPPYPAXE 359
           +H++LGL+G+ FQ LYHFT+G  V+D RI   P YPA E
Sbjct: 542 VHELLGLDGEAFQTLYHFTVGKAVDDPRIESTPGYPARE 580



 Score = 31.2 bits (69), Expect(2) = 3e-09
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -1

Query: 578 YTRLFWESGVLGQVLYHRAHETSISTTGI 492
           Y  LF E+G+LGQVLY +A    +  TGI
Sbjct: 506 YRDLFREAGLLGQVLYLQAENLGLRGTGI 534


>tr|Q9HX73|Q9HX73_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa GN=PA3943 PE=4 SV=1
          Length = 531

 Score = 44.3 bits (103), Expect(2) = 5e-08
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -2

Query: 475 LHDILGLEGKEFQRLYHFTIGSGVEDRRIMGLPPYPAXER 356
           +H++LGL  +    LYHFT+G  V D R+  +P YPA  R
Sbjct: 491 VHELLGLTDESMASLYHFTLGRAVWDTRLCNMPAYPALRR 530



 Score = 36.6 bits (83), Expect(2) = 5e-08
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -1

Query: 578 YTRLFWESGVLGQVLYHRAHETSISTTGI 492
           Y RL+WE G LGQ+LY  A    +S TGI
Sbjct: 455 YPRLYWECGQLGQLLYLEAEAAGLSGTGI 483


>tr|Q02SB2|Q02SB2_PSEAB Putative uncharacterized protein
           OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
           GN=PA14_12860 PE=4 SV=1
          Length = 531

 Score = 44.3 bits (103), Expect(2) = 5e-08
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -2

Query: 475 LHDILGLEGKEFQRLYHFTIGSGVEDRRIMGLPPYPAXER 356
           +H++LGL  +    LYHFT+G  V D R+  +P YPA  R
Sbjct: 491 VHELLGLTDESMASLYHFTLGRAVWDTRLCNMPAYPALRR 530



 Score = 36.6 bits (83), Expect(2) = 5e-08
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -1

Query: 578 YTRLFWESGVLGQVLYHRAHETSISTTGI 492
           Y RL+WE G LGQ+LY  A    +S TGI
Sbjct: 455 YPRLYWECGQLGQLLYLEAEAAELSGTGI 483


>tr|A5EDW1|A5EDW1_BRASB Putative uncharacterized protein
           OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
           GN=BBta_2171 PE=4 SV=1
          Length = 547

 Score = 46.2 bits (108), Expect(2) = 8e-08
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = -2

Query: 475 LHDILGLEGKEFQRLYHFTIGSGVEDRRIMGLPPYPAXER 356
           +H+ILG+ G + Q LYHFT+G  + D RI  LP YP   R
Sbjct: 501 VHEILGVAGTDHQTLYHFTVGRPLADDRITTLPAYPGRTR 540



 Score = 33.9 bits (76), Expect(2) = 8e-08
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 578 YTRLFWESGVLGQVLYHRAHETSISTTGI 492
           Y +L WE+G++GQVLY  A    +  TGI
Sbjct: 465 YRQLHWEAGLIGQVLYLEAEAAGLRGTGI 493


>tr|O67067|O67067_AQUAE Putative uncharacterized protein OS=Aquifex
           aeolicus GN=aq_922 PE=4 SV=1
          Length = 538

 Score = 47.0 bits (110), Expect(2) = 8e-08
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = -2

Query: 475 LHDILGLEGKEFQRLYHFTIGSGVEDRRIMGLPPY 371
           +H++LG+  K FQ LYHFT G  VED RI  + PY
Sbjct: 496 MHEVLGISDKTFQDLYHFTFGKAVEDPRIQTIEPY 530



 Score = 33.1 bits (74), Expect(2) = 8e-08
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 578 YTRLFWESGVLGQVLYHRAHETSISTTGI 492
           Y  L WE+G++GQVLY  A   +++ TGI
Sbjct: 460 YRNLHWEAGLIGQVLYLEATAHNLNGTGI 488


>tr|B7VAI0|B7VAI0_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa LESB58 GN=PLES_10331 PE=4 SV=1
          Length = 531

 Score = 44.3 bits (103), Expect(2) = 1e-07
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -2

Query: 475 LHDILGLEGKEFQRLYHFTIGSGVEDRRIMGLPPYPAXER 356
           +H++LGL  +    LYHFT+G  V D R+  +P YPA  R
Sbjct: 491 VHELLGLTDESMASLYHFTLGRAVWDTRLCNMPAYPAMRR 530



 Score = 35.4 bits (80), Expect(2) = 1e-07
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -1

Query: 578 YTRLFWESGVLGQVLYHRAHETSISTTGI 492
           Y RL+WE G +GQ+LY  A    +S TGI
Sbjct: 455 YPRLYWECGQVGQLLYLEAEAAGLSGTGI 483