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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912827
Clone id YMU001_000023_D01
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTGTGTTTTTTTTTTATTCAAGTATTGGCTTTCATTTGGTAACAATCCGCTTTCA
CTTGCAAGTATGAAAGACAAGGACACGGATACTCCTGAACAATTTCAGTTGTAAAAAACA
ACAATAAACCACCATTTCATTGCCTGACCAAATTTTACAACAAGACGGCTTCCTATGCAG
CACTCCATTCGTTGCTGGCACTCCTTTGACCAGTATAAATGCCATTGTCCCTTGGACTTC
CGAGCTCGTAATGGAGCAAAAATGTTTCACAGCCGTAGAGCCCATATGAAAGGGCTGATG
GTCGAATCAACTCTAGCAGAGGTCAGGGACTCCGAAATTCCATTGAAACTGAGAGTCTCA
TGCCTGCAATATGTTACATGTTCATTGTTGACTTCTCTTCCTCATGATTGGATAGCATTG
TATCTTTTACTATATGGTGACAAATGATTATCATTGGGATGTCATCC
■■Homology search results ■■ -
sp_hit_id P35556
Definition sp|P35556|FBN2_HUMAN Fibrillin-2 OS=Homo sapiens
Align length 31
Score (bit) 32.7
E-value 0.69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912827|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_D01.
         (444 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35556|FBN2_HUMAN Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=2     33   0.69 
sp|Q80YA8|CRUM2_MOUSE Crumbs homolog 2 OS=Mus musculus GN=Crb2 P...    32   1.2  
sp|Q61555|FBN2_MOUSE Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=2 SV=1     31   2.0  
sp|Q5IJ48|CRUM2_HUMAN Crumbs homolog 2 OS=Homo sapiens GN=CRB2 P...    31   2.0  
sp|Q8K3U6|FA7_RAT Coagulation factor VII OS=Rattus norvegicus GN...    31   2.6  
sp|P97607|JAG2_RAT Protein jagged-2 (Fragment) OS=Rattus norvegi...    30   5.9  
sp|P10040|CRB_DROME Protein crumbs OS=Drosophila melanogaster GN...    30   5.9  
sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1 O...    29   7.7  
sp|Q75WH1|TXPT6_MACGS Peptide toxin 6 (Fragment) OS=Macrothele g...    29   7.8  
sp|P09814|POLG_TVMV Genome polyprotein OS=Tobacco vein mottling ...    29   7.8  
sp|Q9NZV5|SELN_HUMAN Selenoprotein N OS=Homo sapiens GN=SEPN1 PE...    29   10.0 
sp|Q63722|JAG1_RAT Protein jagged-1 OS=Rattus norvegicus GN=Jag1...    29   10.0 
sp|Q9QXX0|JAG1_MOUSE Protein jagged-1 OS=Mus musculus GN=Jag1 PE...    29   10.0 
sp|P78504|JAG1_HUMAN Protein jagged-1 OS=Homo sapiens GN=JAG1 PE...    29   10.0 

>sp|P35556|FBN2_HUMAN Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=2
          Length = 2911

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 149  PMQHSIRCWHSFDQYKCHCPLDFRARNGAKM 241
            P+  ++RC ++F  Y+C CP+ +  R   KM
Sbjct: 2260 PLLCALRCMNTFGSYECTCPIGYALREDQKM 2290


>sp|Q80YA8|CRUM2_MOUSE Crumbs homolog 2 OS=Mus musculus GN=Crb2 PE=2
           SV=3
          Length = 1282

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 149 PMQHSIRCWHSFDQYKCHCPLDF 217
           P QH   C +  D Y+CHCPL +
Sbjct: 120 PCQHGGTCQNLADHYECHCPLGY 142


>sp|Q61555|FBN2_MOUSE Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=2 SV=1
          Length = 2907

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 149  PMQHSIRCWHSFDQYKCHCPLDFRARNGAKM 241
            P+  + RC ++F  Y+C CP+ +  R   KM
Sbjct: 2254 PLLCAFRCMNTFGSYECTCPVGYGLREDQKM 2284


>sp|Q5IJ48|CRUM2_HUMAN Crumbs homolog 2 OS=Homo sapiens GN=CRB2 PE=1
           SV=2
          Length = 1285

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 149 PMQHSIRCWHSFDQYKCHCPLDF 217
           P  H   C +  D+Y+CHCPL +
Sbjct: 116 PCHHGATCRNLADRYECHCPLGY 138


>sp|Q8K3U6|FA7_RAT Coagulation factor VII OS=Rattus norvegicus GN=F7
           PE=2 SV=1
          Length = 446

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 149 PMQHSIRCWHSFDQYKCHCPLDFRARNGAK 238
           P Q+   C      Y C CPLDF  RN  K
Sbjct: 95  PCQNGGTCQDHLKSYVCFCPLDFEGRNCEK 124


>sp|P97607|JAG2_RAT Protein jagged-2 (Fragment) OS=Rattus norvegicus
           GN=Jag2 PE=2 SV=1
          Length = 1202

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 149 PMQHSIRCWHSFDQYKCHCPLDFRARN 229
           P  +  RC++  D Y C CP DF  +N
Sbjct: 499 PCLNGARCYNLEDDYYCACPEDFGGKN 525


>sp|P10040|CRB_DROME Protein crumbs OS=Drosophila melanogaster GN=crb
            PE=1 SV=3
          Length = 2146

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 140  RRLPMQHSIRCWHSFDQYKCHCPLDFRARN 229
            R+ P  H+  C ++++ Y C CP  ++ +N
Sbjct: 1484 RKNPCLHNAECRNTWNDYTCKCPNGYKGKN 1513


>sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1
            OS=Homo sapiens GN=NOTCH1 PE=1 SV=4
          Length = 2555

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 149  PMQHSIRCWHSFDQYKCHCP 208
            P ++  +CW +  QY+C CP
Sbjct: 1067 PCKNGGKCWQTHTQYRCECP 1086



 Score = 28.9 bits (63), Expect = 10.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 149 PMQHSIRCWHSFDQYKCHCPLDFRARN 229
           P +H   C ++   Y+CHC   +  RN
Sbjct: 877 PCRHGASCQNTHGGYRCHCQAGYSGRN 903


>sp|Q75WH1|TXPT6_MACGS Peptide toxin 6 (Fragment) OS=Macrothele
           gigas PE=2 SV=2
          Length = 99

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 237 FAPLRARKSKGQWHLYWSKECQQRMECCIGSRLVVKFGQAMKWWF 103
           F P   R S+ +  + +  EC +R+ CC     V   G   +WW+
Sbjct: 48  FVPEENRNSRHKRCMGYDIECNERLHCCADLECVKTSG---RWWY 89


>sp|P09814|POLG_TVMV Genome polyprotein OS=Tobacco vein mottling virus
            PE=1 SV=2
          Length = 3023

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 288  VDSTISPFIWALRL*NIFAPLRARKSKGQWHLYWSKECQQRMECCIGS 145
            VD  ++PF +     N   P+RAR++  Q      +  QQRM C  GS
Sbjct: 2947 VDRNLAPFAFDFFEVNGATPVRAREAHAQMKAAALRNSQQRMFCLDGS 2994
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912827|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_D01.
         (444 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******