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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912828
Clone id YMU001_000023_D02
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTGCCGCGGGCACGA
CAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCCCTC
AATGCTCTAGCGCCCGCACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGC
TCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACGTACTACCGCCCCAGGTG
GCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAACTCTTGGGGAAGATC
AGCCTGTTATCCCTAGAGTAACTTTTATCCGTTGAGCGACGGCCCTTCCACTTGGAACCG
TCGGATCACTAAGGCCGACTTTCGTCCCTGCTCGACTGGTAGGTCTCGCAGTCAAGCTCC
CTTCTGCCTTTGCACTCGTAGGCTGATTTCCGTCCAGCCTGAAGAAACCTTTGCGCGCCT
CCGTTACTCTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGGGACTGTCTCTTGG
■■Homology search results ■■ -
sp_hit_id Q9PLI5
Definition sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydia muridarum
Align length 80
Score (bit) 91.3
E-value 3.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912828|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_D02.
         (540 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydi...    91   3e-18
sp|Q9CYF5|WBS16_MOUSE Williams-Beuren syndrome chromosomal regio...    35   0.30 
sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia herm...    33   0.89 
sp|O10312|Y054_NPVOP Uncharacterized 42.5 kDa protein OS=Orgyia ...    32   2.0  
sp|Q4U0G1|CLAP1_XENLA CLIP-associating protein 1 OS=Xenopus laev...    31   4.4  
sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor 64 kDa subunit...    30   9.8  

>sp|Q9PLI5|Y114_CHLMU Uncharacterized protein TC_0114 OS=Chlamydia
           muridarum GN=TC_0114 PE=4 SV=2
          Length = 122

 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 46/80 (57%), Positives = 49/80 (61%)
 Frame = +1

Query: 130 APAPDMDRTVSRRSEPSSRTALMGEQPNPWDVLPPQVAKSRHRGAKPSRRCXXXXXXXXX 309
           AP  D D+TVSRR EPSSRTAL+GEQPNPWD+L PQ A SRHRGAKP RR          
Sbjct: 43  APTKDRDQTVSRRFEPSSRTALIGEQPNPWDLLQPQDAMSRHRGAKPPRRYELLVAISLL 102

Query: 310 XXXXXXXXXRRPFHLEPSDH 369
                    RR FH  P DH
Sbjct: 103 SPEYLLSVKRRRFHFPPPDH 122


>sp|Q9CYF5|WBS16_MOUSE Williams-Beuren syndrome chromosomal region
           16 protein homolog OS=Mus musculus GN=Wbscr16 PE=2 SV=1
          Length = 461

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 19/40 (47%), Positives = 23/40 (57%)
 Frame = -2

Query: 137 AGARALRGPFPSTRGPGRTHLWCTSCRARGKRWVAKCGAD 18
           A ARALRGP P    P R H W  + R+R +R  A+  AD
Sbjct: 3   AAARALRGPRPRWPTPAREH-WTPAGRSRSRREAAEAEAD 41


>sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia hermsii
           GN=vlp18 PE=3 SV=1
          Length = 360

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 454 DGNQPTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVA 335
           +G+Q   A A+G+ TA   ++ GTK  LS+   P   AVA
Sbjct: 250 EGDQALGAAADGTTTAMSFAKGGTKDNLSNANTPKAAAVA 289


>sp|O10312|Y054_NPVOP Uncharacterized 42.5 kDa protein OS=Orgyia
           pseudotsugata multicapsid polyhedrosis virus GN=ORF58
           PE=4 SV=1
          Length = 378

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = -3

Query: 370 SDPTVPSGRAVAQRIKVTLGITG*SSPRVHIDGKVWHLDVGSSPPGAVVRPKGWAVRPLK 191
           S+P + S  + A  +  TLG    +  RV+       L  G +PPG ++ P    V+ + 
Sbjct: 246 SNPFIISENSSASVVLRTLGKCPDNPERVNC----CKLSYGGAPPGHLMCPPRAIVKKIY 301

Query: 190 RYVSWVQN 167
           RYV+W  N
Sbjct: 302 RYVNWASN 309


>sp|Q4U0G1|CLAP1_XENLA CLIP-associating protein 1 OS=Xenopus laevis
           GN=clasp1 PE=2 SV=1
          Length = 1468

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 457 LDGNQPTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRA 341
           +DGN+P+SA +  S  A  T+R G  +G +    PS  A
Sbjct: 247 VDGNRPSSASSSASSKAPQTARRGVSLGTARRPGPSSAA 285


>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor 64 kDa subunit,
           tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2
          Length = 632

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = -2

Query: 233 GGSTSQGLGCSPIKA--VRELGSERRETVRSISGAGARA----LRGPFPSTRGP 90
           GG  S+G+   P++   +   G ERR    ++   G  A    +RGP PS+RGP
Sbjct: 421 GGRESRGMETRPMETEVLEPRGMERRMETCAMETRGMDARGLEMRGPGPSSRGP 474
tr_hit_id Q4EE25
Definition tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Listeria monocytogenes str. 4b H7858
Align length 111
Score (bit) 183.0
E-value 4.0e-45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912828|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_D02.
         (540 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Liste...   183   4e-45
tr|A5ZQM3|A5ZQM3_9FIRM Putative uncharacterized protein OS=Rumin...   182   1e-44
tr|Q848W1|Q848W1_BACME Putative uncharacterized protein OS=Bacil...   165   2e-39
tr|A5ZYK8|A5ZYK8_9FIRM Putative uncharacterized protein OS=Rumin...   160   3e-38
tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein OS=Clost...   148   2e-34
tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein OS=Clost...   148   2e-34
tr|B1BEF3|B1BEF3_CLOBO Putative uncharacterized protein (Fragmen...   148   2e-34
tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein OS=Clost...   148   2e-34
tr|B1BE06|B1BE06_CLOBO Putative uncharacterized protein OS=Clost...   148   2e-34
tr|B6G1S6|B6G1S6_9CLOT Putative uncharacterized protein OS=Clost...   146   6e-34
tr|B1QFN6|B1QFN6_CLOBO Putative uncharacterized protein OS=Clost...   144   2e-33
tr|B1QFL7|B1QFL7_CLOBO Putative uncharacterized protein (Fragmen...   144   2e-33
tr|B1RTR7|B1RTR7_CLOPE Putative uncharacterized protein OS=Clost...   144   3e-33
tr|B1RKU9|B1RKU9_CLOPE Putative uncharacterized protein OS=Clost...   144   3e-33
tr|B1RCB4|B1RCB4_CLOPE Putative uncharacterized protein OS=Clost...   144   3e-33
tr|B1BTI8|B1BTI8_CLOPE Putative uncharacterized protein OS=Clost...   144   3e-33
tr|B1BLN6|B1BLN6_CLOPE Putative uncharacterized protein OS=Clost...   144   3e-33
tr|B1BEX7|B1BEX7_CLOPE Putative uncharacterized protein OS=Clost...   144   3e-33
tr|Q877Q8|Q877Q8_CLOTE Putative uncharacterized protein OS=Clost...   141   2e-32
tr|A7DZU9|A7DZU9_CLOSP Hypothetical CTC00065-like protein OS=Clo...   141   2e-32
tr|B1C1N3|B1C1N3_9FIRM Putative uncharacterized protein OS=Clost...   139   7e-32
tr|B2E6W4|B2E6W4_STRPN Putative uncharacterized protein OS=Strep...   137   4e-31
tr|A8R9P5|A8R9P5_9FIRM Putative uncharacterized protein OS=Eubac...   135   2e-30
tr|Q8CQV6|Q8CQV6_STAES Putative uncharacterized protein OS=Staph...   134   3e-30
tr|B5HM15|B5HM15_9ACTO Putative uncharacterized protein OS=Strep...   133   7e-30
tr|B5G7E4|B5G7E4_9ACTO Putative uncharacterized protein OS=Strep...   133   7e-30
tr|B4V362|B4V362_9ACTO Putative uncharacterized protein OS=Strep...   131   3e-29
tr|A5Z309|A5Z309_9FIRM Putative uncharacterized protein OS=Eubac...   129   1e-28
tr|B0A9C5|B0A9C5_9CLOT Putative uncharacterized protein OS=Clost...   127   5e-28
tr|B0A7G5|B0A7G5_9CLOT Putative uncharacterized protein OS=Clost...   127   5e-28

>tr|Q4EE25|Q4EE25_LISMO Putative uncharacterized protein OS=Listeria
           monocytogenes str. 4b H7858 GN=LMOh7858_1903 PE=4 SV=1
          Length = 112

 Score =  183 bits (465), Expect = 4e-45
 Identities = 90/111 (81%), Positives = 95/111 (85%)
 Frame = -3

Query: 457 LDGNQPTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHI 278
           +DGN   S KA+GSLTAR TSRAGTKVGLSDP VP GRA+AQRIK T GITG S PRVHI
Sbjct: 1   MDGNHSQSVKAQGSLTARLTSRAGTKVGLSDPVVPHGRAIAQRIKATPGITGLSPPRVHI 60

Query: 277 DGKVWHLDVGSSPPGAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYPVRALE 125
           DG+VWHLDVGSS PGAVV PKGWAVRPLKR+ SWVQNVVRQFGPYP RA E
Sbjct: 61  DGEVWHLDVGSSHPGAVVGPKGWAVRPLKRHASWVQNVVRQFGPYPSRAQE 111


>tr|A5ZQM3|A5ZQM3_9FIRM Putative uncharacterized protein
           OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_01295 PE=4
           SV=1
          Length = 109

 Score =  182 bits (462), Expect = 1e-44
 Identities = 90/109 (82%), Positives = 92/109 (84%)
 Frame = -3

Query: 457 LDGNQPTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHI 278
           +DGN P SAKAEGSLTA PT  AGTKVGLSDP V SG A+AQRIK TLGITG S PRVHI
Sbjct: 1   MDGNHPKSAKAEGSLTATPTGGAGTKVGLSDPVVLSGNAIAQRIKATLGITGLSLPRVHI 60

Query: 277 DGKVWHLDVGSSPPGAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYPVRA 131
           DG VWHLDVGSS PGAVV PKGWAVRPLKRY SWVQNVVRQFGPYP  A
Sbjct: 61  DGVVWHLDVGSSHPGAVVGPKGWAVRPLKRYASWVQNVVRQFGPYPAWA 109


>tr|Q848W1|Q848W1_BACME Putative uncharacterized protein OS=Bacillus
           megaterium PE=4 SV=1
          Length = 95

 Score =  165 bits (417), Expect = 2e-39
 Identities = 79/92 (85%), Positives = 82/92 (89%)
 Frame = -3

Query: 415 LTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHIDGKVWHLDVGSSPP 236
           +TAR TSRAGTKVGLSDP VP GRA+AQRIK T GITG S PRVHIDG+VWHLDVGSS P
Sbjct: 1   MTARTTSRAGTKVGLSDPVVPHGRAIAQRIKATPGITGLSPPRVHIDGEVWHLDVGSSHP 60

Query: 235 GAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYP 140
           GAVV PKGWAVRPLKRY SWVQNVVRQFGPYP
Sbjct: 61  GAVVGPKGWAVRPLKRYASWVQNVVRQFGPYP 92


>tr|A5ZYK8|A5ZYK8_9FIRM Putative uncharacterized protein
           OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_04125 PE=4
           SV=1
          Length = 108

 Score =  160 bits (406), Expect = 3e-38
 Identities = 80/100 (80%), Positives = 83/100 (83%)
 Frame = -3

Query: 430 KAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHIDGKVWHLDV 251
           ++ GSLTA PT  AGTKVGLSDP V SG A+AQRIK TLGITG S PRVHIDG VWHLDV
Sbjct: 9   QSRGSLTATPTGGAGTKVGLSDPVVLSGNAIAQRIKATLGITGLSLPRVHIDGVVWHLDV 68

Query: 250 GSSPPGAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYPVRA 131
           GSS PGAVV  KGWAVRPLKRY SWVQNVVRQFGPYP  A
Sbjct: 69  GSSHPGAVVGLKGWAVRPLKRYASWVQNVVRQFGPYPAWA 108


>tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein
           OS=Clostridium novyi (strain NT) GN=NT01CX_0152 PE=4
           SV=1
          Length = 213

 Score =  148 bits (374), Expect = 2e-34
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = +2

Query: 242 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 421
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 422 FCLCTRRLISVQPEETFARLRYSLGGLRPIETVYLGLS 535
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein
           OS=Clostridium novyi (strain NT) GN=NT01CX_0251 PE=4
           SV=1
          Length = 213

 Score =  148 bits (374), Expect = 2e-34
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = +2

Query: 242 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 421
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 422 FCLCTRRLISVQPEETFARLRYSLGGLRPIETVYLGLS 535
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BEF3|B1BEF3_CLOBO Putative uncharacterized protein (Fragment)
           OS=Clostridium botulinum C str. Eklund GN=CBC_A1887 PE=4
           SV=1
          Length = 107

 Score =  148 bits (374), Expect = 2e-34
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = +2

Query: 242 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 421
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 422 FCLCTRRLISVQPEETFARLRYSLGGLRPIETVYLGLS 535
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum C str. Eklund GN=CBC_A1890 PE=4
           SV=1
          Length = 210

 Score =  148 bits (374), Expect = 2e-34
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = +2

Query: 242 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 421
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 422 FCLCTRRLISVQPEETFARLRYSLGGLRPIETVYLGLS 535
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BE06|B1BE06_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum C str. Eklund GN=CBC_0392 PE=4
           SV=1
          Length = 213

 Score =  148 bits (374), Expect = 2e-34
 Identities = 72/98 (73%), Positives = 78/98 (79%)
 Frame = +2

Query: 242 RRADIEVPNLPVDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAP 421
           RRADIEVPNLPVDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAP
Sbjct: 2   RRADIEVPNLPVDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAP 61

Query: 422 FCLCTRRLISVQPEETFARLRYSLGGLRPIETVYLGLS 535
           FCLCT R IS + E TF RLRY LGG RP +T +L +S
Sbjct: 62  FCLCTLRAISDRAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B6G1S6|B6G1S6_9CLOT Putative uncharacterized protein
           OS=Clostridium hiranonis DSM 13275 GN=CLOHIR_02084 PE=4
           SV=1
          Length = 169

 Score =  146 bits (369), Expect = 6e-34
 Identities = 73/103 (70%), Positives = 79/103 (76%)
 Frame = -3

Query: 439 TSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*SSPRVHIDGKVWH 260
           T  K    L  +    +  +VGLSDP V SGRA+AQRIK TLGITG S PRVHIDG+VWH
Sbjct: 67  TECKGIRELDCKTYRSSKDEVGLSDPVVLSGRAIAQRIKATLGITGLSPPRVHIDGEVWH 126

Query: 259 LDVGSSPPGAVVRPKGWAVRPLKRYVSWVQNVVRQFGPYPVRA 131
           LDVGSS PGAVV PKGWAVRPLK Y SWVQNVVRQFGPYP +A
Sbjct: 127 LDVGSSHPGAVVGPKGWAVRPLKWYASWVQNVVRQFGPYPSQA 169



 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 32/46 (69%), Positives = 35/46 (76%)
 Frame = -2

Query: 533 TVPGRQFLWGVGLPKSNGGAQRFLQAGRKSAYECKGRRELDCETYQ 396
           T+ G QF WG  LPK NGGAQRF Q GRKS  ECKG RELDC+TY+
Sbjct: 36  TLSGGQFDWGGRLPKGNGGAQRFSQHGRKSCTECKGIRELDCKTYR 81