BP912829 |
Clone id |
YMU001_000023_D03 |
Library |
YMU01 |
Length |
543 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000023_D03. |
Accession |
BP912829 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CCTGGAGGTAGTGCGGGCATAGTGGAGGCTTGTGTAGGTGAACCCAGGCGTGTTGTTCCA TGGGCCGATTTCCCATAAGTCGATCATCACCCATTTTTTCGCACAAACTTTGCCATTTAT ACCTTTCCGAGCCAGCCAGCATACTGGAGGATCCTGTTCTATCCTTGCTCTTTTCTACCA TATTGAAGTCGCCAACCAACAACCACTCACCTTCAATAGGAGTATCTCTAAGATGCATCC ATAGTTTAGCTCTATCTTTTGCATTGCAAGGGCCATACACATTCACAATAGTGAAGGGAT GCCCTTCCCATCTGATTCTAATCCTCAGGATTCTGTCAAATGGGTGGCTTAGAACCAACT TCGGCTCCAATTCTCTGTCCACAATGCTGAGGACGCCACTGAAACCATTACTTCCTTCTC CATAGAATACTATTTTCTTTCCTAGCGCCTGCTTTCTCTTGCTATGGGCATCTAAATGGT GTTCCTGGATGGNCTAGCAATTGACTACCTTCTCCTTTTTTATTTCCTCCCCGAATAGGG TAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P14381 |
Definition |
sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis |
Align length |
97 |
Score (bit) |
40.4 |
E-value |
0.006 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SVI1 |
Definition |
tr|A9SVI1|A9SVI1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
112 |
Score (bit) |
53.5 |
E-value |
7.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912829|Adiantum capillus-veneris mRNA, clone: YMU001_000023_D03. (543 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SVI1|A9SVI1_PHYPA Predicted protein OS=Physcomitrella paten... 54 7e-06 tr|Q8LJX1|Q8LJX1_SORBI Putative reverse transcriptase OS=Sorghum... 49 2e-04 tr|Q8LK00|Q8LK00_SORBI Putative reverse transcriptase OS=Sorghum... 46 0.001 tr|Q84Q63|Q84Q63_ORYSJ Putative reverse transcriptase (Retrotran... 45 0.003 tr|Q7XU53|Q7XU53_ORYSA OSJNBa0006A01.18 protein OS=Oryza sativa ... 45 0.003 tr|A5C6T3|A5C6T3_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003 tr|A5AGI5|A5AGI5_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003 tr|A9SSN9|A9SSN9_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.004 tr|A5BXF3|A5BXF3_VITVI Putative uncharacterized protein OS=Vitis... 44 0.004 tr|Q76IL5|Q76IL5_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P... 44 0.005 tr|A5AP22|A5AP22_VITVI Putative uncharacterized protein OS=Vitis... 44 0.005 tr|Q9AY65|Q9AY65_ORYSJ Putative reverse transcriptase (Retrotran... 43 0.009 tr|A5BG45|A5BG45_VITVI Putative uncharacterized protein OS=Vitis... 43 0.012 tr|Q7XKK3|Q7XKK3_ORYSJ OSJNBa0038O10.4 protein OS=Oryza sativa s... 42 0.021 tr|Q01HQ6|Q01HQ6_ORYSA OSIGBa0153E02-OSIGBa0093I20.19 protein OS... 42 0.021 tr|A5BIP7|A5BIP7_VITVI Putative uncharacterized protein OS=Vitis... 42 0.021 tr|Q9SKJ4|Q9SKJ4_ARATH Putative non-LTR retroelement reverse tra... 42 0.027 tr|Q9SIQ5|Q9SIQ5_ARATH Putative non-LTR retroelement reverse tra... 42 0.027 tr|Q8LM65|Q8LM65_ORYSJ Putative non-LTR retroelement reverse tra... 41 0.036 tr|A5CBN4|A5CBN4_VITVI Putative uncharacterized protein OS=Vitis... 41 0.036 tr|A5C364|A5C364_VITVI Putative uncharacterized protein OS=Vitis... 41 0.036 tr|A5BYI9|A5BYI9_VITVI Putative uncharacterized protein OS=Vitis... 41 0.036 tr|Q53K65|Q53K65_ORYSJ Putative uncharacterized protein (Retrotr... 41 0.046 tr|A9S5A5|A9S5A5_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.046 tr|A9RZG7|A9RZG7_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.046 tr|A5CBJ9|A5CBJ9_VITVI Putative uncharacterized protein OS=Vitis... 41 0.046 tr|Q76IM1|Q76IM1_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P... 40 0.061 tr|Q7Y1F8|Q7Y1F8_ORYSJ Putative reverse transcriptase OS=Oryza s... 40 0.061 tr|Q10D55|Q10D55_ORYSJ Retrotransposon protein, putative, unclas... 40 0.061 tr|A9SRZ5|A9SRZ5_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.061
>tr|A9SVI1|A9SVI1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_166786 PE=4 SV=1 Length = 623
Score = 53.5 bits (127), Expect = 7e-06 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 7/112 (6%) Frame = -3
Query: 421 GEGSNGFSGVLSIVDRELEPKLVLSHPFDRILRIRIRWE------GHPFTIVNVYGPCNA 260 G G V ++VD L P L I+ R W G +VN+Y P + Sbjct: 376 GSEGQGKGEVCTLVDNRLHP---LVEDIGIIMENRAVWIKFSDTLGGDIGLVNLYAPNCS 432
Query: 259 KDRAKLWMHL-RDTPIEGEWLLVGDFNMVEKSKDRTGSSSMLAGSERYKWQS 107 +R +LW L + PI +W + GDFNM++KS +L+G E++ W+S Sbjct: 433 TERVQLWHKLVSNLPINCQWHIAGDFNMMDKSSQ---CGRLLSGGEKFAWES 481
>tr|Q8LJX1|Q8LJX1_SORBI Putative reverse transcriptase OS=Sorghum bicolor GN=SB234M12.12 PE=4 SV=1 Length = 1998
Score = 48.5 bits (114), Expect = 2e-04 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Frame = -3
Query: 361 KLVLSHPFDRILRIRIRWEGHPFTIVNVYGPCNAKDRAKL--WMHLRDTPIEGEWLLVGD 188 +L+ S+ + +++ + + NVY PC + + + W TP E +WL+VGD Sbjct: 889 ELIFSNEYAISIQMSSMHNNDSWLLTNVYAPCTDEGKRQFVNWFKNIQTPHEVDWLVVGD 948
Query: 187 FNMVEKSKDRTGSSSMLAGSERYKWQSLCEKMGDDRLMGNRPMEQHAWVHLHKPPL 20 FN++ K +DR SE + + S +G + ++ ++ W ++ PL Sbjct: 949 FNLMRKHEDRNKEGG--DSSEMFLFNSAISSLGLNEII--LQGRKYTWSNMQSNPL 1000
>tr|Q8LK00|Q8LK00_SORBI Putative reverse transcriptase OS=Sorghum bicolor GN=S126P21.7 PE=4 SV=1 Length = 1323
Score = 45.8 bits (107), Expect = 0.001 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 2/135 (1%) Frame = -3
Query: 409 NGFSGVLSIVDRE-LEPKLVLSHPFDRILRIRIRWEGHPFTIVNVYGPCNAKDRAKLWMH 233 N GVL D++ + LV F + I +R H F + VYGP N ++ Sbjct: 262 NTRGGVLIAWDQDYIRGNLVRQDRFCLSIDITLRLTNHSFVLTTVYGPANNTEKNSFLAE 321
Query: 232 L-RDTPIEGEWLLVGDFNMVEKSKDRTGSSSMLAGSERYKWQSLCEKMGDDRLMGNRPME 56 L R P WL +GDFN++ +++D+ ++ A +++ ++ + +L + Sbjct: 322 LIRCQPRGRPWLCLGDFNLICEAQDKNNNNINRAHMRKFRQALDASELLEIKLQNRK--- 378
Query: 55 QHAWVHLHKPPLCPH 11 + W + K P H Sbjct: 379 -YTWSNGRKNPTLVH 392
>tr|Q84Q63|Q84Q63_ORYSJ Putative reverse transcriptase (Retrotransposon protein, putative, LINE subclass) OS=Oryza sativa subsp. japonica GN=OSJNBa0071M09.17 PE=4 SV=1 Length = 870
Score = 44.7 bits (104), Expect = 0.003 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Frame = -3
Query: 304 GHPFTIVNVYGPCNAKDRAKLWMH---LRDTPIEGEWLLVGDFNMVEKSKDRTGSSSMLA 134 G F + VYGP + H LR +P EG WL++GDFNM+ +++D+ S+ LA Sbjct: 105 GVTFLLTGVYGPTRHHLKDSFLRHIRRLRPSPGEG-WLILGDFNMIYRARDKNNSNLNLA 163
Query: 133 GSERYK 116 R++ Sbjct: 164 RMRRFR 169
>tr|Q7XU53|Q7XU53_ORYSA OSJNBa0006A01.18 protein OS=Oryza sativa GN=OSJNBa0006A01.18 PE=4 SV=3 Length = 1189
Score = 44.7 bits (104), Expect = 0.003 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Frame = -3
Query: 304 GHPFTIVNVYGPCNAKDRAKLWMH---LRDTPIEGEWLLVGDFNMVEKSKDRTGSSSMLA 134 G F + VYGP + H LR +P EG WL++GDFNM+ +++D+ S+ LA Sbjct: 105 GVTFLLTGVYGPTRHHLKDSFLRHIRRLRPSPGEG-WLILGDFNMIYRARDKNNSNLNLA 163
Query: 133 GSERYK 116 R++ Sbjct: 164 RMRRFR 169
>tr|A5C6T3|A5C6T3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030454 PE=4 SV=1 Length = 1101
Score = 44.7 bits (104), Expect = 0.003 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = -3
Query: 307 EGHPFTIVNVYGPCNAKDRAKLWMHLRDTP--IEGEWLLVGDFNMVEKSKDRTGSSSMLA 134 +G + VYGPCN K+R +LW L E W L GDFN+ +DR+ S+ Sbjct: 133 DGVVWIFTGVYGPCNRKEREELWEELGAIRGIWEEPWCLGGDFNVTLSQRDRSRQGSLNG 192
Query: 133 GSERY 119 R+ Sbjct: 193 AMRRF 197
>tr|A5AGI5|A5AGI5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044009 PE=4 SV=1 Length = 1290
Score = 44.7 bits (104), Expect = 0.003 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = -3
Query: 307 EGHPFTIVNVYGPCNAKDRAKLWMHLRDTP--IEGEWLLVGDFNMVEKSKDRTGSSSMLA 134 +G + VYGPCN K+R +LW L E W L GDFN+ +DR+ S+ Sbjct: 368 DGVVWIFTGVYGPCNRKEREELWEELGAIRGIWEEPWCLGGDFNVTLSQRDRSRQGSLNG 427
Query: 133 GSERY 119 R+ Sbjct: 428 AMRRF 432
>tr|A9SSN9|A9SSN9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_166348 PE=4 SV=1 Length = 816
Score = 44.3 bits (103), Expect = 0.004 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Frame = -3
Query: 289 IVNVYGPCNAKDRAKLWMHLRDTPI-EGEWLLVGDFNMVEKSKDRTGSSSMLAGSER--Y 119 I+NVYG + RA+LW + D P+ W++ GD N +E +D+ G ++ L R Sbjct: 695 IINVYGYNHTGPRARLWQKITDYPLPPALWIMGGDLNFIESLEDKQGGNNNLGRGRREVE 754
Query: 118 KWQSL 104 W +L Sbjct: 755 SWNNL 759
>tr|A5BXF3|A5BXF3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033119 PE=4 SV=1 Length = 1190
Score = 44.3 bits (103), Expect = 0.004 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Frame = -3
Query: 295 FTIVNVYGPCNAKDRAKLWMHLRDTPIEG----EWLLVGDFNMVEKSKDRTGSSSMLAGS 128 +T VYGPCN K+R LW L I+G W + GDFN+ +DR+ S+ Sbjct: 106 WTFTGVYGPCNRKERELLWEEL--GAIKGIWDEPWCIGGDFNVTLSQRDRSRQGSLNGAM 163
Query: 127 ERYKWQSLCEKMGDDRLMGNRPMEQH 50 R+ L G + RP H Sbjct: 164 RRFAQGWLDTFRGAVQCRLPRPTSDH 189
>tr|Q76IL5|Q76IL5_DANRE Pol-like protein OS=Danio rerio GN=ORF2 PE=4 SV=1 Length = 1233
Score = 43.9 bits (102), Expect = 0.005 Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 7/130 (5%) Frame = -3
Query: 529 EEIKKEKVVNC*XIQEHHLDAHSK---RKQALGKKIVFYGEGSNGFSGVLSIVDRELE-- 365 E+ K ++V+ +QE + H+ +K G I G+G +G GV ++ +++ Sbjct: 38 EKCKNKEVIG---LQETNWKEHAMNDFKKLWQGDIIYNNGDGKSG-RGVAFLIRKDVLNF 93
Query: 364 PKLVLSHPFDRILRIRIRWEGHPFTIVNVYGPCNAKDRAKLWMHLRDTPIEG--EWLLVG 191 ++V + + L I + +EGH I N++ P KD+ K + + + ++G E +++G Sbjct: 94 KRIVYRDNYGKCLVIEVNYEGHELIIANIHAPTEDKDK-KEYFEVLNKVLKGFKEIIMMG 152
Query: 190 DFNMVEKSKD 161 DFN V + +D Sbjct: 153 DFNTVFRKQD 162
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