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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912831
Clone id YMU001_000023_D05
Library
Length 618
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATCACCACATTAGATATATATCTCGACCACAATCGTATCGAGCACCGGTCCATCAGCAT
ACCCAGCTTCCAATGCACTGCAAGAGATAGACATTCTCGACTAGGTTCTCCCCGAGCACT
TATTGCTCTATGAAGTGCACCATATTCGGGTACCTGGTTGAAGCCCAAAAACTCCCAGAT
GGCACACGGACCGGGACGACCATACTGTTACGGAATCGACCCCCGGTGTAACTTCAATGG
GCAATATCTTGGCAGCCACAGCTCCAAATGGCAATCTGGAAAGACCAACATGCTCCACAT
GACGAGCACTTTAGGCCCATGCATTCACTTCAACTCTGGCCCTTCATCTACGACTACCCA
ATCTTCATCTGCGACTACCCAATCTGGCACGAATTTGCAAACACCTCCAACTTCAAACTC
AATTATCTTGTACTTTGTAGCTCTGTGTGATGAGTTGTTTGAACCTGCCCATTTAGCACT
TCAAGCTCTACATATCCAAGCCAAAAATCAACACTTTGGACACCCCTCACCCTCCATCCC
GACAGGCCCTCTCTGAAACCCTTTTTGTCTGAAAACCACATAAAGCATACATCTCCAATC
ATCCTGATATCACATCGA
■■Homology search results ■■ -
sp_hit_id Q90592
Definition sp|Q90592|GTR2_CHICK Solute carrier family 2, facilitated glucose transporter member 2 OS=Gallus gallus
Align length 56
Score (bit) 33.1
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912831|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_D05.
         (618 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q90592|GTR2_CHICK Solute carrier family 2, facilitated glucos...    33   1.2  
sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain D...    32   2.0  
sp|Q3J5V8|RECO_RHOS4 DNA repair protein recO OS=Rhodobacter spha...    32   2.6  
sp|A3PGG1|RECO_RHOS1 DNA repair protein recO OS=Rhodobacter spha...    32   2.6  
sp|Q2IWU2|RECO_RHOP2 DNA repair protein recO OS=Rhodopseudomonas...    31   4.5  
sp|Q62889|NLGN3_RAT Neuroligin-3 OS=Rattus norvegicus GN=Nlgn3 P...    31   4.5  
sp|Q8BYM5|NLGN3_MOUSE Neuroligin-3 OS=Mus musculus GN=Nlgn3 PE=1...    31   4.5  
sp|Q9NZ94|NLGN3_HUMAN Neuroligin-3 OS=Homo sapiens GN=NLGN3 PE=1...    31   4.5  
sp|Q136V6|RECO_RHOPS DNA repair protein recO OS=Rhodopseudomonas...    31   5.8  
sp|Q85FL8|RR4_ADICA 30S ribosomal protein S4, chloroplastic OS=A...    30   7.6  
sp|Q5LNK7|RECO_SILPO DNA repair protein recO OS=Silicibacter pom...    30   7.6  
sp|Q9Z238|CCNE2_MOUSE G1/S-specific cyclin-E2 OS=Mus musculus GN...    30   7.7  

>sp|Q90592|GTR2_CHICK Solute carrier family 2, facilitated glucose
           transporter member 2 OS=Gallus gallus GN=SLC2A2 PE=2
           SV=1
          Length = 533

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 132 EVHHIRVPG*SPKTPR-WHTDRDDHTVTESTPGVTSMGNILAATAPNGNLERPTCS 296
           E H+ R+ G  P      +T RD+ T+T + PG  + G+     AP+   E PT S
Sbjct: 46  EAHYGRMLGAIPMVRHATNTSRDNATITVTIPGTEAWGSSEGTLAPSAGFEDPTVS 101


>sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain DSM
            16790) GN=hmu PE=4 SV=1
          Length = 9159

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 186  TDRDDHTVTESTPGVTSMGNILAATAPNGNL 278
            TD  DHTVT STP   S G +     P G L
Sbjct: 7674 TDSHDHTVTGSTPTFVSSGTVTTPENPGGTL 7704


>sp|Q3J5V8|RECO_RHOS4 DNA repair protein recO OS=Rhodobacter
           sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
           158) GN=recO PE=3 SV=2
          Length = 238

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 310 SARHVEHVGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 155
           +A H  H G+ R   G  + KI PI + PG      W +R   H+G F ++P
Sbjct: 26  TAAHGRHAGVVR---GGASRKIAPI-LQPGAQLDLTWKARLDEHMGAFTVEP 73


>sp|A3PGG1|RECO_RHOS1 DNA repair protein recO OS=Rhodobacter
           sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=recO PE=3
           SV=1
          Length = 239

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 310 SARHVEHVGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 155
           +A H  H G+ R   G  + KI PI + PG      W +R   H+G F ++P
Sbjct: 27  TAAHGRHAGVVR---GGASRKIAPI-LQPGAQLDLTWKARLDEHMGAFTVEP 74


>sp|Q2IWU2|RECO_RHOP2 DNA repair protein recO OS=Rhodopseudomonas
           palustris (strain HaA2) GN=recO PE=3 SV=1
          Length = 249

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = -3

Query: 301 HVEHVGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQPGTRI 143
           H  H+GL R   G  ++++ P+ + PG   + VW +R   HLG + L+ GTR+
Sbjct: 29  HGRHLGLVR---GGASSRLRPL-LQPGNSVLAVWRARLDEHLGYYQLE-GTRM 76


>sp|Q62889|NLGN3_RAT Neuroligin-3 OS=Rattus norvegicus GN=Nlgn3 PE=1
           SV=1
          Length = 848

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +2

Query: 5   TTLDIYLDHNRIEHRSISIPSFQCTARDRHSRLGSPRALIAL*SAPYSGTWLKPKNSQMA 184
           T + ++ DH  +E   ++         D H+R GSP    A     +  + +KP  S  A
Sbjct: 473 TLVALFTDHQWVEPSVVTA--------DLHARYGSPTYFYAF--YHHCQSLMKPAWSDAA 522

Query: 185 HGPGRPYCYGI 217
           HG   PY +G+
Sbjct: 523 HGDEVPYVFGV 533


>sp|Q8BYM5|NLGN3_MOUSE Neuroligin-3 OS=Mus musculus GN=Nlgn3 PE=1
           SV=1
          Length = 825

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +2

Query: 5   TTLDIYLDHNRIEHRSISIPSFQCTARDRHSRLGSPRALIAL*SAPYSGTWLKPKNSQMA 184
           T + ++ DH  +E   ++         D H+R GSP    A     +  + +KP  S  A
Sbjct: 450 TLVALFTDHQWVEPSVVTA--------DLHARYGSPTYFYAF--YHHCQSLMKPAWSDAA 499

Query: 185 HGPGRPYCYGI 217
           HG   PY +G+
Sbjct: 500 HGDEVPYVFGV 510


>sp|Q9NZ94|NLGN3_HUMAN Neuroligin-3 OS=Homo sapiens GN=NLGN3 PE=1
           SV=2
          Length = 848

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +2

Query: 5   TTLDIYLDHNRIEHRSISIPSFQCTARDRHSRLGSPRALIAL*SAPYSGTWLKPKNSQMA 184
           T + ++ DH  +E   ++         D H+R GSP    A     +  + +KP  S  A
Sbjct: 473 TLVALFTDHQWVEPSVVTA--------DLHARYGSPTYFYAF--YHHCQSLMKPAWSDAA 522

Query: 185 HGPGRPYCYGI 217
           HG   PY +G+
Sbjct: 523 HGDEVPYVFGV 533


>sp|Q136V6|RECO_RHOPS DNA repair protein recO OS=Rhodopseudomonas
           palustris (strain BisB5) GN=recO PE=3 SV=1
          Length = 249

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = -3

Query: 301 HVEHVGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQPGTRI 143
           H  H+GL R   G  ++++ P+ + PG   + VW +R   HLG + L+ GTR+
Sbjct: 29  HGRHLGLVR---GGASSRMRPL-LQPGNSVLAVWRARLDEHLGYYQLE-GTRM 76


>sp|Q85FL8|RR4_ADICA 30S ribosomal protein S4, chloroplastic
           OS=Adiantum capillus-veneris GN=rps4 PE=2 SV=4
          Length = 197

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 29  HNRIEHRSISIPSFQCTARDRHSRLGSPRALIAL*SAPYSG 151
           H  + HR + IPS++C  RD  S    P +  AL S   SG
Sbjct: 110 HILVNHRVVDIPSYRCKPRDIISIRNRPTSANALKSESLSG 150
tr_hit_id A4EEZ6
Definition tr|A4EEZ6|A4EEZ6_9RHOB DNA repair protein RecO OS=Roseobacter sp. CCS2
Align length 52
Score (bit) 34.7
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912831|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_D05.
         (618 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4EEZ6|A4EEZ6_9RHOB DNA repair protein RecO OS=Roseobacter sp...    35   4.6  
tr|A3VCD2|A3VCD2_9RHOB DNA repair protein RecO OS=Rhodobacterale...    35   4.6  
tr|A3V348|A3V348_9RHOB DNA repair protein RecO OS=Loktanella ves...    35   4.6  

>tr|A4EEZ6|A4EEZ6_9RHOB DNA repair protein RecO OS=Roseobacter sp.
           CCS2 GN=RCCS2_06264 PE=4 SV=1
          Length = 244

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 310 SARHVEHVGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 155
           SA H  H G+ R   G  + K+ P+ + PG      W +R   HLG F ++P
Sbjct: 27  SALHGRHAGVVR---GGASRKLAPV-LQPGAQLSVAWKARLESHLGSFAVEP 74


>tr|A3VCD2|A3VCD2_9RHOB DNA repair protein RecO OS=Rhodobacterales
           bacterium HTCC2654 GN=recO PE=4 SV=1
          Length = 246

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -3

Query: 310 SARHVEHVGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 155
           +A H  H G+ R   G V+ KI PI + PG     VW +R   H+G F ++P
Sbjct: 29  TAEHGRHAGVVR---GGVSRKIAPI-LQPGSQLDLVWRARLEEHIGAFTVEP 76


>tr|A3V348|A3V348_9RHOB DNA repair protein RecO OS=Loktanella
           vestfoldensis SKA53 GN=recO PE=4 SV=1
          Length = 243

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -3

Query: 310 SARHVEHVGLSRLPFGAVAAKILPIEVTPGVDSVTVWSSRSVCHLGVFGLQP 155
           SA H  H G+ R   G  + KI P+ + PG      W++R   HLG F ++P
Sbjct: 27  SANHGRHAGVVR---GGASRKIAPL-IQPGAQVNVAWAARLDDHLGSFTVEP 74