BP912835
Clone id YMU001_000023_D09
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CACTGGCGAAACGAGGCGAGTGGGGGTAGAGTGACTAGATCAATCAAGCCACAATCACAC
AGTGTGGTCATTGATTCAAAACAATGTGAGAAAGGATGTCTTCAGGTGTGGTCCCATGTT
GATGTAGATATTATGTACACACGTGATGCATCTAGAGGGTAAGTGAAAAGTATACATTAA
AAAAAATATAGATTAGTCATTAATAGGTGTCGTTATCATTGTTTGAAAAGAAAGATTTCG
TATCTTCTAGCTTAATATTGTACAATATTAGATAGAAAAGAGCACTTGTACATTAGGCCC
AAAATATGATGTTATCCATCAAAAACAACAGGAACGCCATCAAGGATAGACAATTTGGCC
AAATGAAAGTGACATTTAGACGTTTTTTGCTAAAGTAGGAGCACAAAAGCTCAAGCTAGA
GGAGACACGAATGCCATACTTTTGTATACGTGTCAAGTGAGTATTGGCCTATTCCTTAAT
TTTTGGATTATCAAACAGTCCTTTTTTAGGTGTTTTTGGCCCTAATTCTCTCCTCTCTCT
C
■■Homology search results ■■ -
sp_hit_id O54701
Definition sp|O54701|NCKX2_RAT Sodium/potassium/calcium exchanger 2 OS=Rattus norvegicus
Align length 42
Score (bit) 30.8
E-value 4.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912835|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_D09.
(541 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O54701|NCKX2_RAT Sodium/potassium/calcium exchanger 2 OS=Ratt... 31 4.5
sp|Q9UI40|NCKX2_HUMAN Sodium/potassium/calcium exchanger 2 OS=Ho... 31 4.5
sp|O60721|NCKX1_HUMAN Sodium/potassium/calcium exchanger 1 OS=Ho... 31 4.5
sp|Q9IAL7|NCKX2_CHICK Sodium/potassium/calcium exchanger 2 OS=Ga... 30 5.8
sp|Q9ZIN3|MOAB_STACA Molybdenum cofactor biosynthesis protein B ... 30 5.8
sp|Q28139|NCKX1_BOVIN Sodium/potassium/calcium exchanger 1 OS=Bo... 30 9.9

>sp|O54701|NCKX2_RAT Sodium/potassium/calcium exchanger 2 OS=Rattus
norvegicus GN=Slc24a2 PE=2 SV=1
Length = 670

Score = 30.8 bits (68), Expect = 4.5
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Frame = -1

Query: 403 CSYFSKKRLNVTFIWP-------NCLSLMAFLLFLMDNIIFW 299
C+ FS++ LN+T+ WP + L+ ++F +DN+I W
Sbjct: 224 CALFSREILNLTW-WPLFRDVSFYIVDLIMLIIFFLDNVIMW 264


>sp|Q9UI40|NCKX2_HUMAN Sodium/potassium/calcium exchanger 2 OS=Homo
sapiens GN=SLC24A2 PE=2 SV=1
Length = 661

Score = 30.8 bits (68), Expect = 4.5
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Frame = -1

Query: 403 CSYFSKKRLNVTFIWP-------NCLSLMAFLLFLMDNIIFW 299
C+ FS++ LN+T+ WP + L+ ++F +DN+I W
Sbjct: 223 CALFSREILNLTW-WPLFRDVSFYIVDLIMLIIFFLDNVIMW 263


>sp|O60721|NCKX1_HUMAN Sodium/potassium/calcium exchanger 1 OS=Homo
sapiens GN=SLC24A1 PE=1 SV=1
Length = 1099

Score = 30.8 bits (68), Expect = 4.5
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Frame = -1

Query: 403 CSYFSKKRLNVTFIWP-------NCLSLMAFLLFLMDNIIFW 299
CS FS++ LN+T+ WP L L+ +LF +D++I W
Sbjct: 543 CSLFSREILNLTW-WPLFRDVSFYILDLIMLILFFLDSLIAW 583


>sp|Q9IAL7|NCKX2_CHICK Sodium/potassium/calcium exchanger 2
OS=Gallus gallus GN=SLC24A2 PE=2 SV=1
Length = 651

Score = 30.4 bits (67), Expect = 5.8
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Frame = -1

Query: 403 CSYFSKKRLNVTFIWP-------NCLSLMAFLLFLMDNIIFW 299
C+ FS++ LN+T+ WP + L+ ++F +DN+I W
Sbjct: 225 CALFSREILNLTW-WPLFRDVSFYIVDLILLIIFFLDNLIMW 265


>sp|Q9ZIN3|MOAB_STACA Molybdenum cofactor biosynthesis protein B
OS=Staphylococcus carnosus GN=moaB PE=3 SV=1
Length = 170

Score = 30.4 bits (67), Expect = 5.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1

Query: 43 IKPQSHSVVIDSKQCEKGCLQVWSHVDVDIMYT 141
IKP+ +++V D KQ LQ W DVD++ T
Sbjct: 48 IKPEHYAIVKDDKQAITEQLQQWLAEDVDVIIT 80


>sp|Q28139|NCKX1_BOVIN Sodium/potassium/calcium exchanger 1 OS=Bos
taurus GN=SLC24A1 PE=1 SV=2
Length = 1216

Score = 29.6 bits (65), Expect = 9.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Frame = -1

Query: 403 CSYFSKKRLNVTFIWP-------NCLSLMAFLLFLMDNIIFW 299
C+ FS++ LN+T+ WP LM +LF +D++I W
Sbjct: 537 CALFSREILNLTW-WPLFRDITFYIFDLMMLILFFLDSLIAW 577


tr_hit_id B4MGM8
Definition tr|B4MGM8|B4MGM8_DROVI GJ16073 OS=Drosophila virilis
Align length 32
Score (bit) 26.2
E-value 6.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912835|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_D09.
(541 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4MGM8|B4MGM8_DROVI GJ16073 OS=Drosophila virilis GN=GJ16073 ... 26 6.6

>tr|B4MGM8|B4MGM8_DROVI GJ16073 OS=Drosophila virilis GN=GJ16073
PE=4 SV=1
Length = 696

Score = 26.2 bits (56), Expect(2) = 6.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1

Query: 274 YLILYNIKLEDTKSFFSNNDNDTY**LIYIFF 179
YL+ Y I L K F N+ TY +I++F+
Sbjct: 582 YLLFYYIILITKKEFILNDPQSTYTRIIHLFY 613



Score = 26.2 bits (56), Expect(2) = 6.6
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2

Query: 189 IFFLMYTFHLPSRCITCVHNIYINMGPHLKTSFL 88
+F+L C+ +HN Y+ PH KT L
Sbjct: 611 LFYLTMEHEPLYNCLKSLHNFYVAQVPHKKTEQL 644