BP912838 |
Clone id |
YMU001_000023_D12 |
Library |
YMU01 |
Length |
516 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000023_D12. |
Accession |
BP912838 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ACCTGCAGGTACTCCTGTAGTCATAGTGAAAAGCTGGCCCTTGCGTGTGCCCTTATCAAT ACAGCTCAAGGAGAAAGCATACGTATTGTCAAGAATATGCGCATGTGTGGTGATTGCCAT GTTGCCACAGCACTCATTTCAAAAATAGAGAAGCGAAGAATTGTGATCAGAGACAAGAAC CGCAGTCATGGTTTTGAAGATGGAAAGTGCTCTTGTGGGGACTATTGGTGATATGTAGCA GAAGCTTTTCAAAGATCTCAATAGAGAGTTCCTTTGCTTACCTAATAAAGGATGCCAACA AAGAAGTCAAACTTATTTGCAGGCGTGCTTTCAAGTAAATGGAAAAATTGGCTTCTCCTT GCAAGTGCCACCTTAAATCCTCCTTCGACTACCGAGGTAAACACTTACGAGGAAGGAAAG AAAAAACTTTGGAGTAATAGCAGTTTCGCATGGTTGAGTGGTACGATCTATGGCTGTGCG AAAGTTGATAGTGCAAGGGTAAACCTTGGCCTTGGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LTV8 |
Definition |
sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana |
Align length |
71 |
Score (bit) |
100.0 |
E-value |
3.0e-21 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PFU2 |
Definition |
tr|A7PFU2|A7PFU2_VITVI Chromosome chr6 scaffold_15, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
71 |
Score (bit) |
103.0 |
E-value |
4.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912838|Adiantum capillus-veneris mRNA, clone: YMU001_000023_D12. (516 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PFU2|A7PFU2_VITVI Chromosome chr6 scaffold_15, whole genome... 103 4e-21 tr|A9TDA2|A9TDA2_PHYPA Predicted protein OS=Physcomitrella paten... 102 1e-20 tr|Q5W965|Q5W965_PHYPA PPR868-14 OS=Physcomitrella patens PE=2 SV=1 102 1e-20 tr|A9SDQ1|A9SDQ1_PHYPA Predicted protein OS=Physcomitrella paten... 102 1e-20 tr|A7QTS4|A7QTS4_VITVI Chromosome undetermined scaffold_171, who... 102 1e-20 tr|A5AEL2|A5AEL2_VITVI Putative uncharacterized protein OS=Vitis... 102 1e-20 tr|A7PYM3|A7PYM3_VITVI Chromosome chr12 scaffold_38, whole genom... 101 2e-20 tr|A7R1A1|A7R1A1_VITVI Chromosome undetermined scaffold_342, who... 101 3e-20 tr|A7PLK6|A7PLK6_VITVI Chromosome chr7 scaffold_20, whole genome... 101 3e-20 tr|A5BSF9|A5BSF9_VITVI Putative uncharacterized protein OS=Vitis... 101 3e-20 tr|B7ZYC5|B7ZYC5_MAIZE Putative uncharacterized protein OS=Zea m... 100 3e-20 tr|A9P0W0|A9P0W0_PICSI Putative uncharacterized protein OS=Picea... 100 3e-20 tr|Q8GRU0|Q8GRU0_ORYSJ Os07g0113500 protein OS=Oryza sativa subs... 100 4e-20 tr|B8YEK4|B8YEK4_ORYSJ Pentatricopeptide repeat protein OS=Oryza... 100 4e-20 tr|B8YEK3|B8YEK3_ORYSJ Pentatricopeptide repeat protein OS=Oryza... 100 4e-20 tr|B8AZL5|B8AZL5_ORYSI Putative uncharacterized protein OS=Oryza... 100 4e-20 tr|A7P5R6|A7P5R6_VITVI Chromosome chr4 scaffold_6, whole genome ... 100 4e-20 tr|A2YHI6|A2YHI6_ORYSI Putative uncharacterized protein OS=Oryza... 100 4e-20 tr|Q8LI18|Q8LI18_ORYSJ Selenium-binding protein-like OS=Oryza sa... 100 6e-20 tr|A7QIJ2|A7QIJ2_VITVI Chromosome chr9 scaffold_104, whole genom... 100 6e-20 tr|A7P2L5|A7P2L5_VITVI Chromosome chr1 scaffold_5, whole genome ... 100 6e-20 tr|Q10IY6|Q10IY6_ORYSJ Os03g0441400 protein OS=Oryza sativa subs... 99 1e-19 tr|A9T938|A9T938_PHYPA Predicted protein OS=Physcomitrella paten... 99 1e-19 tr|A7NYS2|A7NYS2_VITVI Chromosome chr6 scaffold_3, whole genome ... 99 1e-19 tr|A2XIE6|A2XIE6_ORYSI Putative uncharacterized protein OS=Oryza... 99 1e-19 tr|Q941T0|Q941T0_ORYSJ Pentatricopeptide (PPR) repeat-containing... 99 1e-19 tr|B8AC47|B8AC47_ORYSI Putative uncharacterized protein OS=Oryza... 99 1e-19 tr|A7QZ88|A7QZ88_VITVI Chromosome undetermined scaffold_267, who... 99 1e-19 tr|A7QHK7|A7QHK7_VITVI Chromosome chr5 scaffold_98, whole genome... 99 1e-19 tr|A7PM23|A7PM23_VITVI Chromosome chr14 scaffold_21, whole genom... 99 1e-19
>tr|A7PFU2|A7PFU2_VITVI Chromosome chr6 scaffold_15, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017247001 PE=4 SV=1 Length = 868
Score = 103 bits (258), Expect = 4e-21 Identities = 45/71 (63%), Positives = 54/71 (76%) Frame = +1
Query: 16 CSHSEKLALACALINTAQGESIRIVKNMRMCGDCHVATALISKIEKRRIVIRDKNRSHGF 195 C HSEK+ALA LI+T G +RI+KN+R+CGDCH AT ISK+EKR I++RD R H F Sbjct: 798 CGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHF 857
Query: 196 EDGKCSCGDYW 228 DG CSCGDYW Sbjct: 858 VDGVCSCGDYW 868
>tr|A9TDA2|A9TDA2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_169414 PE=4 SV=1 Length = 703
Score = 102 bits (254), Expect = 1e-20 Identities = 44/71 (61%), Positives = 54/71 (76%) Frame = +1
Query: 16 CSHSEKLALACALINTAQGESIRIVKNMRMCGDCHVATALISKIEKRRIVIRDKNRSHGF 195 CSHSEKLA+ L++T G IR+ KN+R+C DCH AT LISK+E R I++RD NR H F Sbjct: 633 CSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHF 692
Query: 196 EDGKCSCGDYW 228 +DG CSCGDYW Sbjct: 693 KDGVCSCGDYW 703
>tr|Q5W965|Q5W965_PHYPA PPR868-14 OS=Physcomitrella patens PE=2 SV=1 Length = 868
Score = 102 bits (253), Expect = 1e-20 Identities = 45/71 (63%), Positives = 52/71 (73%) Frame = +1
Query: 16 CSHSEKLALACALINTAQGESIRIVKNMRMCGDCHVATALISKIEKRRIVIRDKNRSHGF 195 C HSEKLA+A L+ T G IRI+KN+R+CGDCH AT ISKI KR IV RD NR H F Sbjct: 798 CHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYF 857
Query: 196 EDGKCSCGDYW 228 +G CSCGD+W Sbjct: 858 NNGTCSCGDFW 868
>tr|A9SDQ1|A9SDQ1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_211228 PE=4 SV=1 Length = 868
Score = 102 bits (253), Expect = 1e-20 Identities = 45/71 (63%), Positives = 52/71 (73%) Frame = +1
Query: 16 CSHSEKLALACALINTAQGESIRIVKNMRMCGDCHVATALISKIEKRRIVIRDKNRSHGF 195 C HSEKLA+A L+ T G IRI+KN+R+CGDCH AT ISKI KR IV RD NR H F Sbjct: 798 CHHSEKLAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYF 857
Query: 196 EDGKCSCGDYW 228 +G CSCGD+W Sbjct: 858 NNGTCSCGDFW 868
>tr|A7QTS4|A7QTS4_VITVI Chromosome undetermined scaffold_171, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00006467001 PE=4 SV=1 Length = 676
Score = 102 bits (253), Expect = 1e-20 Identities = 46/69 (66%), Positives = 53/69 (76%) Frame = +1
Query: 22 HSEKLALACALINTAQGESIRIVKNMRMCGDCHVATALISKIEKRRIVIRDKNRSHGFED 201 HSEKLA+A A++NTA G IRI KN+R+CGDCH+A LISKI R I IRD NR H F + Sbjct: 608 HSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYN 667
Query: 202 GKCSCGDYW 228 G CSCGDYW Sbjct: 668 GVCSCGDYW 676
>tr|A5AEL2|A5AEL2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035038 PE=4 SV=1 Length = 1740
Score = 102 bits (253), Expect = 1e-20 Identities = 46/69 (66%), Positives = 53/69 (76%) Frame = +1
Query: 22 HSEKLALACALINTAQGESIRIVKNMRMCGDCHVATALISKIEKRRIVIRDKNRSHGFED 201 HSEKLA+A A++NTA G IRI KN+R+CGDCH+A LISKI R I IRD NR H F + Sbjct: 1599 HSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYN 1658
Query: 202 GKCSCGDYW 228 G CSCGDYW Sbjct: 1659 GVCSCGDYW 1667
>tr|A7PYM3|A7PYM3_VITVI Chromosome chr12 scaffold_38, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026498001 PE=4 SV=1 Length = 643
Score = 101 bits (252), Expect = 2e-20 Identities = 43/70 (61%), Positives = 54/70 (77%) Frame = +1
Query: 19 SHSEKLALACALINTAQGESIRIVKNMRMCGDCHVATALISKIEKRRIVIRDKNRSHGFE 198 +HSEKLA+A L+NT G +R+ KN+R+CGDCH AT ISKI +R I++RD NR H F+ Sbjct: 574 THSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFK 633
Query: 199 DGKCSCGDYW 228 DG CSCGDYW Sbjct: 634 DGSCSCGDYW 643
>tr|A7R1A1|A7R1A1_VITVI Chromosome undetermined scaffold_342, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00011842001 PE=4 SV=1 Length = 652
Score = 101 bits (251), Expect = 3e-20 Identities = 44/69 (63%), Positives = 51/69 (73%) Frame = +1
Query: 22 HSEKLALACALINTAQGESIRIVKNMRMCGDCHVATALISKIEKRRIVIRDKNRSHGFED 201 HSEKLALA AL+NT G IRI KN+R+CGDCH A +SK+ R I++RD NR H F D Sbjct: 584 HSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRD 643
Query: 202 GKCSCGDYW 228 G CSCGDYW Sbjct: 644 GSCSCGDYW 652
>tr|A7PLK6|A7PLK6_VITVI Chromosome chr7 scaffold_20, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019609001 PE=4 SV=1 Length = 580
Score = 101 bits (251), Expect = 3e-20 Identities = 45/69 (65%), Positives = 54/69 (78%) Frame = +1
Query: 22 HSEKLALACALINTAQGESIRIVKNMRMCGDCHVATALISKIEKRRIVIRDKNRSHGFED 201 HSEKLA+A LINT G +I+IVKN+R+C DCH T LISKI R+IV+RD+NR H F + Sbjct: 512 HSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVN 571
Query: 202 GKCSCGDYW 228 G CSCGDYW Sbjct: 572 GSCSCGDYW 580
>tr|A5BSF9|A5BSF9_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001089 PE=4 SV=1 Length = 575
Score = 101 bits (251), Expect = 3e-20 Identities = 45/69 (65%), Positives = 54/69 (78%) Frame = +1
Query: 22 HSEKLALACALINTAQGESIRIVKNMRMCGDCHVATALISKIEKRRIVIRDKNRSHGFED 201 HSEKLA+A LINT G +I+IVKN+R+C DCH T LISKI R+IV+RD+NR H F + Sbjct: 507 HSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVN 566
Query: 202 GKCSCGDYW 228 G CSCGDYW Sbjct: 567 GSCSCGDYW 575
|