BP912839
Clone id YMU001_000023_E01
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCTTGGGTCCATTATAAAGGTTACAAGGGATGCTAAAAGCAAAGCCCCAAAAGCATTAAA
CTCAAAAGAAACTTCTTCCAAAAGCTGCTAGCCAAAAATAGCCAGCGCTATTTGCGGAAA
TTCGTACAGCCAGCCAACGTAAAACGCGGAAAAGTCCGTACAGTGCCAAGTCTGTACAGT
CAACGTAATTTGCGGCCGTCCGTACAGCAGCCACGCAGCATGTCCTTCGCTTTATTTTAA
CTCCTAGTTGTCCTTAGGCCCCTCGGCGCAGGTCCATAAGTTGGAACAACTTCTTAAAGG
TTGTGCCACGTCATCAGTTTGTGATAGGTTCAATGGCATCGTGTTTTCATAAGTGGCCTT
GACCTTTTCCCACACAGCATAAGCTGTGTCACGACCCTTAAGGTCTACCAAAATTTCATG
CGAAAGAGCCATCTTTACATATGCAATAGCCTGCTTGTTTAAATTAAGTCACGTCTCGTC
TGTCATGGTTACAAGCTTTGCACTTACAGTGCAC
■■Homology search results ■■ -
sp_hit_id Q21WC8
Definition sp|Q21WC8|DNLJ_RHOFD DNA ligase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
Align length 78
Score (bit) 32.3
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912839|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_E01.
(514 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q21WC8|DNLJ_RHOFD DNA ligase OS=Rhodoferax ferrireducens (str... 32 1.3
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 31 3.0

>sp|Q21WC8|DNLJ_RHOFD DNA ligase OS=Rhodoferax ferrireducens (strain
DSM 15236 / ATCC BAA-621 / T118) GN=ligA PE=3 SV=1
Length = 690

Score = 32.3 bits (72), Expect = 1.3
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +1

Query: 55 IKLKRNFFQKLLAKNSQRYLRKFVQPANVKRGKVRTVPSLYSQRNLRPSVQQPRSMSFAL 234
+ ++R+ F+KL + R + FV P N G V R L P++ R +SF
Sbjct: 189 VYMRRDDFEKLNEQQRARGQKTFVNPRNAAAGAV---------RQLDPAIAAQRPLSFFA 239

Query: 235 F*LLVVLRPLGAGP*VGT 288
+ L V GP GT
Sbjct: 240 YGLGEVTPEQAGGPAFGT 257


>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
Length = 1328

Score = 31.2 bits (69), Expect = 3.0
Identities = 14/52 (26%), Positives = 32/52 (61%)
Frame = -2

Query: 504 SAKLVTMTDET*LNLNKQAIAYVKMALSHEILVDLKGRDTAYAVWEKVKATY 349
S K TM E +L+++A + +++ LS +++ ++ DTA +W ++++ Y
Sbjct: 41 SKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLY 92


tr_hit_id Q94HD2
Definition tr|Q94HD2|Q94HD2_ORYSA Putative retroelement (Fragment) OS=Oryza sativa
Align length 56
Score (bit) 33.9
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912839|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_E01.
(514 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q94HD2|Q94HD2_ORYSA Putative retroelement (Fragment) OS=Oryza... 34 4.9
tr|Q8H8K3|Q8H8K3_ORYSJ Putative retroelement (Retrotransposon pr... 34 4.9
tr|Q10G21|Q10G21_ORYSJ Retrotransposon protein, putative, unclas... 33 6.4

>tr|Q94HD2|Q94HD2_ORYSA Putative retroelement (Fragment) OS=Oryza
sativa GN=OSJNBa0045C13.19 PE=4 SV=1
Length = 1131

Score = 33.9 bits (76), Expect = 4.9
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -2

Query: 507 VSAKLVTMTDET*LNLNKQAIAYVKMALSHEILVDLKGRDTAYAVWEKVKATYENT 340
++ K +T D L LN QA+ + +LS E + +TAY +W K+ +E T
Sbjct: 67 ITGKPLTEIDHRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGT 122


>tr|Q8H8K3|Q8H8K3_ORYSJ Putative retroelement (Retrotransposon
protein, putative, Ty1-copia subclass) OS=Oryza sativa
subsp. japonica GN=OSJNBb0078C13.12 PE=4 SV=1
Length = 1299

Score = 33.9 bits (76), Expect = 4.9
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -2

Query: 507 VSAKLVTMTDET*LNLNKQAIAYVKMALSHEILVDLKGRDTAYAVWEKVKATYENT 340
++ K +T D L LN QA+ + +LS E + +TAY +W K+ +E T
Sbjct: 13 ITGKPLTEIDHRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGT 68


>tr|Q10G21|Q10G21_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os03g44470 PE=4 SV=1
Length = 1441

Score = 33.5 bits (75), Expect = 6.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2

Query: 510 TVSAKLVTMTDET*LNLNKQAIAYVKMALSHEILVDLKGRDTAYAVWEKVKATYENT 340
T++ +T D L LN QA+ + +LS E + +TAY +W K+ +E T
Sbjct: 46 TITGTPLTEIDHRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGT 102