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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912857
Clone id YMU001_000023_F07
Library
Length 614
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATGGACTACTAATCGGCTGCAAAAACACATGTAATAGGTTCTTGTC
ACCCTCCACAATTGGAGGCATGTGACGCATCAACTGATCGAAGGTATCCAACACATCACT
ATCACGAACTGTAACTGGAGGTCGAAAGTGCTCTGGCTAGTAATGCATCAGGTCTACTTT
ATAGTTTTTACTCAAGCGCTCAGAGAAGCGCACAAAAGGGCCAAGCTCATCAGCACCCCT
AGCAAACATAGCTCGTTCCAGCTTGTATAACTCCAACCCACCTCTCACACAAAAGTGTAA
CATGCAAAAAAAGGCAAACCTAGACTGACAACCACGGCTATGCTGAATACTGAAGTCGAT
GTCGCGCAAGATCTCTTGTTCCAATGTGACGCCAAGAACTGATGATTTCTTTCGCTCTTT
GCATACTCCACGAGCTACCGATCTTCGCATCGCTGAAATCACTGCATTCTGGGTCGATTT
GAAAATTGGATTCTTTACTATATCAAAGGGAACTTCAGTTACACCCGTAAGTGCTACCCT
CAATTCTTGCTCCTTCTTAATCATCTCCAGAAATTACATCCAAGCTTCCTACACAAAGGG
GAGCAGATCCTGCG
■■Homology search results ■■ -
sp_hit_id O59490
Definition sp|O59490|XERCL_PYRHO Probable tyrosine recombinase xerC-like OS=Pyrococcus horikoshii
Align length 62
Score (bit) 30.4
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912857|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_F07.
         (598 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O59490|XERCL_PYRHO Probable tyrosine recombinase xerC-like OS...    30   7.1  
sp|Q5FVW6|SKAP2_XENTR Src kinase-associated phosphoprotein 2 OS=...    30   7.1  
sp|Q920G0|SKAP2_RAT Src kinase-associated phosphoprotein 2 OS=Ra...    30   7.1  
sp|Q5RDS2|SKAP2_PONAB Src kinase-associated phosphoprotein 2 OS=...    30   7.1  
sp|Q3UND0|SKAP2_MOUSE Src kinase-associated phosphoprotein 2 OS=...    30   7.1  
sp|O75563|SKAP2_HUMAN Src kinase-associated phosphoprotein 2 OS=...    30   7.1  
sp|Q32LP7|SKAP2_BOVIN Src kinase-associated phosphoprotein 2 OS=...    30   7.1  
sp|Q5XGP7|SKA2A_XENLA Src kinase-associated phosphoprotein 2-A O...    30   7.1  
sp|Q9LW85|MFP1_ARATH MAR-binding filament-like protein 1 OS=Arab...    30   7.1  
sp|Q6PG29|SKAP2_DANRE Src kinase-associated phosphoprotein 2 OS=...    30   9.3  
sp|Q5U597|SKA2B_XENLA Src kinase-associated phosphoprotein 2-B O...    30   9.3  
sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (stra...    30   9.3  

>sp|O59490|XERCL_PYRHO Probable tyrosine recombinase xerC-like
           OS=Pyrococcus horikoshii GN=PH1826 PE=3 SV=1
          Length = 285

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 42  VTLHNWRH--VTHQLIEGIQHITITNCNWRSKVLWLVMHQVYFIVFTQALREAHKRAKLI 215
           VT H  RH   TH L  G+    I      +    L   Q+Y  V T+ LREA ++AKLI
Sbjct: 223 VTPHQLRHSFATHMLERGVDIRIIQELLGHAN---LSTTQIYTKVTTKHLREAIEKAKLI 279

Query: 216 ST 221
            T
Sbjct: 280 ET 281


>sp|Q5FVW6|SKAP2_XENTR Src kinase-associated phosphoprotein 2
           OS=Xenopus tropicalis GN=skap2 PE=2 SV=2
          Length = 328

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 403 KSERNHQFLASHWNKRSCATSTSVF 329
           K  ++H F AS W KR C  + S+F
Sbjct: 112 KRRKDHSFFASEWQKRWCVCTNSMF 136


>sp|Q920G0|SKAP2_RAT Src kinase-associated phosphoprotein 2
           OS=Rattus norvegicus GN=Skap2 PE=2 SV=1
          Length = 358

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 403 KSERNHQFLASHWNKRSCATSTSVF 329
           K  ++H FL   W KR CA S +VF
Sbjct: 125 KRRKDHSFLGFEWQKRWCALSKTVF 149


>sp|Q5RDS2|SKAP2_PONAB Src kinase-associated phosphoprotein 2
           OS=Pongo abelii GN=SKAP2 PE=2 SV=2
          Length = 359

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 403 KSERNHQFLASHWNKRSCATSTSVF 329
           K  ++H FL   W KR CA S +VF
Sbjct: 125 KRRKDHSFLGFEWQKRWCALSKTVF 149


>sp|Q3UND0|SKAP2_MOUSE Src kinase-associated phosphoprotein 2 OS=Mus
           musculus GN=Skap2 PE=1 SV=2
          Length = 358

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 403 KSERNHQFLASHWNKRSCATSTSVF 329
           K  ++H FL   W KR CA S +VF
Sbjct: 125 KRRKDHSFLGFEWQKRWCALSKTVF 149


>sp|O75563|SKAP2_HUMAN Src kinase-associated phosphoprotein 2
           OS=Homo sapiens GN=SKAP2 PE=1 SV=1
          Length = 359

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 403 KSERNHQFLASHWNKRSCATSTSVF 329
           K  ++H FL   W KR CA S +VF
Sbjct: 125 KRRKDHSFLGFEWQKRWCALSKTVF 149


>sp|Q32LP7|SKAP2_BOVIN Src kinase-associated phosphoprotein 2 OS=Bos
           taurus GN=SKAP2 PE=2 SV=1
          Length = 358

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 403 KSERNHQFLASHWNKRSCATSTSVF 329
           K  ++H FL   W KR CA S +VF
Sbjct: 125 KRRKDHSFLGFEWQKRWCALSKTVF 149


>sp|Q5XGP7|SKA2A_XENLA Src kinase-associated phosphoprotein 2-A
           OS=Xenopus laevis GN=skap2-A PE=2 SV=1
          Length = 330

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 403 KSERNHQFLASHWNKRSCATSTSVF 329
           K  ++H F AS W KR C  + S+F
Sbjct: 114 KRRKDHSFFASEWQKRWCVLTNSMF 138


>sp|Q9LW85|MFP1_ARATH MAR-binding filament-like protein 1
           OS=Arabidopsis thaliana GN=MFP1 PE=2 SV=2
          Length = 726

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = +1

Query: 394 FRSLHTPRATDLRIAEITAFWVDLKIGFFTISKGTSVTPVSATLNSCSFLIISRNYIQAS 573
           F  L +P   D R  EI    VDL+     +S+GTS  P  A LN     I S   + A 
Sbjct: 86  FLQLRSPALADERGNEIKTSKVDLETEVAVVSEGTSPNPFLALLNGLG--IFSAGVLGAL 143

Query: 574 Y 576
           Y
Sbjct: 144 Y 144


>sp|Q6PG29|SKAP2_DANRE Src kinase-associated phosphoprotein 2
           OS=Danio rerio GN=skap2 PE=2 SV=1
          Length = 341

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 403 KSERNHQFLASHWNKRSCATSTSVF 329
           K  ++H F  + W KR CA + S+F
Sbjct: 114 KRRKDHSFFGNEWQKRWCALNNSIF 138
tr_hit_id A9TJK4
Definition tr|A9TJK4|A9TJK4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 182
Score (bit) 99.0
E-value 2.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912857|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_F07.
         (598 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TJK4|A9TJK4_PHYPA Predicted protein OS=Physcomitrella paten...    99   2e-19
tr|A9T3H6|A9T3H6_PHYPA Predicted protein OS=Physcomitrella paten...    86   2e-15
tr|A9SAM0|A9SAM0_PHYPA Predicted protein OS=Physcomitrella paten...    84   6e-15
tr|A9TVS0|A9TVS0_PHYPA Predicted protein OS=Physcomitrella paten...    75   4e-12
tr|A8NG98|A8NG98_BRUMA Putative uncharacterized protein (Fragmen...    35   3.3  
tr|B6PF88|B6PF88_BRAFL Putative uncharacterized protein OS=Branc...    34   5.6  

>tr|A9TJK4|A9TJK4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170451 PE=4 SV=1
          Length = 894

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 61/182 (33%), Positives = 95/182 (52%)
 Frame = -3

Query: 548 MIKKEQELRVALTGVTEVPFDIVKNPIFKSTQNAVISAMRRSVARGVCKERKKSSVLGVT 369
           +I+  QE+R+A T V EVPF+I+ +  FK  + AV   +  +   G+ K RK+  VL + 
Sbjct: 301 VIRAHQEVRIAETQVPEVPFNIMSDVRFKKARQAVSDNVASAGRLGLGKRRKRIDVLTLH 360

Query: 368 LEQEILRDIDFSIQHSRGCQSRFAFFCMLHFCVRGGLELYKLERAMFARGADELGPFVRF 189
            E  +L    +    ++GC  RFA+FC  +F +RG  EL++L    F+ G D  G F+R+
Sbjct: 361 DEAAMLALSTYKATTAKGCSMRFAYFCTRNFFIRGPAELHELTDMDFSLGKDHHGEFLRY 420

Query: 188 SERLSKNYKVDLMHY*PEHFRPPVTVRDSDVLDTFDQLMRHMPPIVEGDKNLLHVFLQPI 9
            +R  K++  D     PE F  PVT    DV+ T+  ++ H P   E +      FL  I
Sbjct: 421 EKR-PKSWSSDSPQSQPEKFSRPVTCYIEDVVSTYKIMVEHKPKWAEDEPPPRPFFLTDI 479

Query: 8   SS 3
            +
Sbjct: 480 KN 481


>tr|A9T3H6|A9T3H6_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_167861 PE=4 SV=1
          Length = 799

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 57/180 (31%), Positives = 89/180 (49%)
 Frame = -3

Query: 548  MIKKEQELRVALTGVTEVPFDIVKNPIFKSTQNAVISAMRRSVARGVCKERKKSSVLGVT 369
            +I+  +E R   TG+ +VPF I ++P F   + AV  A+ +S A    KE     V    
Sbjct: 565  IIRAREEQRTVETGIAKVPFSIYRDPRFLKVKWAVEDAVAKSAAIESAKEVIALEVHPPM 624

Query: 368  LEQEILRDIDFSIQHSRGCQSRFAFFCMLHFCVRGGLELYKLERAMFARGADELGPFVRF 189
             E E+L    FS  H  GC  RFA+FC+  F V+G  EL +L    F    DE G  +R+
Sbjct: 625  NEGEMLNQCKFSNTHPEGCSRRFAYFCLRDFYVKGRSELRELSDVDFELFTDEHGECLRY 684

Query: 188  SERLSKNYKVDLMHY*PEHFRPPVTVRDSDVLDTFDQLMRHMPPIVEGDKNLLHVFLQPI 9
            +  +  N+K ++ +  P H    +    SDVL+ +  LM H P  ++ +     +FL+ +
Sbjct: 685  TRGMGANWKHNIDNQ-PRH---SIRCYISDVLEAYHTLMAHRPVWLDTEPPPHPIFLKSL 740


>tr|A9SAM0|A9SAM0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163835 PE=4 SV=1
          Length = 704

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 54/163 (33%), Positives = 81/163 (49%)
 Frame = -3

Query: 548 MIKKEQELRVALTGVTEVPFDIVKNPIFKSTQNAVISAMRRSVARGVCKERKKSSVLGVT 369
           +I+  +  R A TG+ +VPF I ++P F   + AV  A+ +S A    KE     V    
Sbjct: 470 IIRARELQRTAETGIAKVPFSIYRDPRFLRVKLAVEEAVAKSAAIESAKEVMTLEVHPPM 529

Query: 368 LEQEILRDIDFSIQHSRGCQSRFAFFCMLHFCVRGGLELYKLERAMFARGADELGPFVRF 189
            E  +L    FS  H  GC  RF +FC+  FCV+G  EL +L    F    DE G  +R+
Sbjct: 530 NEIGMLSQCKFSNTHPEGCNRRFVYFCLRDFCVKGRSELRELSDVDFELFTDEHGECLRY 589

Query: 188 SERLSKNYKVDLMHY*PEHFRPPVTVRDSDVLDTFDQLMRHMP 60
           +  +  N K+++ +  P H    +    +DVL+T+  LM H P
Sbjct: 590 TRGMGANLKLNIDNQ-PRH---SIRCYITDVLETYHVLMAHRP 628


>tr|A9TVS0|A9TVS0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_97924 PE=4 SV=1
          Length = 606

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 52/165 (31%), Positives = 79/165 (47%)
 Frame = -3

Query: 542 KKEQELRVALTGVTEVPFDIVKNPIFKSTQNAVISAMRRSVARGVCKERKKSSVLGVTLE 363
           +  QE R+A T V E P +I+ +  FK    AV   +  +   G+ K RK  S+L +  E
Sbjct: 177 RAHQEARIAETQVPEAPLNIMSDVRFKKAGQAVSDNVASAGRLGLGKRRKCISILTLLDE 236

Query: 362 QEILRDIDFSIQHSRGCQSRFAFFCMLHFCVRGGLELYKLERAMFARGADELGPFVRFSE 183
             +L    +    ++GC  RFA+FC   F +RG  EL++L    F  G D+ G +    E
Sbjct: 237 AAMLALSTYKCTSAKGCSMRFAYFCTQKFFIRGTAELHELTDMDFTLGKDQHGDY----E 292

Query: 182 RLSKNYKVDLMHY*PEHFRPPVTVRDSDVLDTFDQLMRHMPPIVE 48
           +  K++  D     PE F  P+T    DV  T   +++H P   E
Sbjct: 293 KRLKSWSSDCPLSHPEKFSLPMTCYIEDV-STHKIMIQHKPKWAE 336


>tr|A8NG98|A8NG98_BRUMA Putative uncharacterized protein (Fragment)
            OS=Brugia malayi GN=Bm1_01875 PE=4 SV=1
          Length = 1090

 Score = 35.0 bits (79), Expect = 3.3
 Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 17/164 (10%)
 Frame = -3

Query: 470  IFKSTQNAVISAMRRSVARGV---CKERKKSSVL--GVTLEQEILRDIDFSIQHSRGCQS 306
            IF+S    V+  M+   A  +   C + ++ S L  G  L+ +   +    I  S GC S
Sbjct: 843  IFQSANETVVIYMQNKFATTIMMSCDDVRQISRLSSGHMLKTKATTEEATIIMLSIGCIS 902

Query: 305  RFA------------FFCMLHFCVRGGLELYKLERAMFARGADELGPFVRFSERLSKNYK 162
            ++A              C ++ C R   E  ++      R    L   +R  ER+ +  +
Sbjct: 903  KYANTLMTEFIVKDAHKCKVNLCSRASRESERISNVSLNRSTKMLATTIRLLERIKRKEQ 962

Query: 161  VDLMHY*PEHFRPPVTVRDSDVLDTFDQLMRHMPPIVEGDKNLL 30
            + +  +  E+    + ++ + +  T  Q+ R  P  V G  N++
Sbjct: 963  LTVTEFGDENEHVAILLQRAGI--THGQVQREWPEAVTGRSNII 1004


>tr|B6PF88|B6PF88_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_106251 PE=4 SV=1
          Length = 913

 Score = 34.3 bits (77), Expect = 5.6
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 7/143 (4%)
 Frame = -3

Query: 467  FKSTQNAVISAMRRSVARGVCKERKKSSVLGVTLEQEILRDIDFSIQHSRGCQSRFAFFC 288
            F+  + A+ + M+   A G+   +K++  L    E  +      S   S+G       + 
Sbjct: 605  FEEFRKALDTRMKELTAMGIGVTKKQAEPLTPDDESRLWDSNTISTTTSQGLSYGVFLYN 664

Query: 287  MLHFCVRGGLELYKLERAMFARGADELGPFVRFSERLSKNY-------KVDLMHY*PEHF 129
               F +RG  E  +L    +  G D  G ++ ++ R+SKN        +VD+     + +
Sbjct: 665  CKVFGLRGMDEHQRLMLDQYRFGTDAQGRYMEYTGRVSKNVQGGLQQRQVDVKRI--KQY 722

Query: 128  RPPVTVRDSDVLDTFDQLMRHMP 60
              P   R   V++ F+Q  RH+P
Sbjct: 723  ASPTNPR--CVVNLFEQYTRHLP 743