BP912866
Clone id YMU001_000023_G04
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AATTCGCGGCCGCGAATTTTAATAGCTGACTAGTCATACATTGATACTTTTAAATGAAAC
TAGTTACGCTTTCAGCTAGTTACTGTCCAAGCATTTGAAGCATTTTTCAAGAAAAACATT
TATACAACATTGATATTCACATCATTTTTGAGATAAGAATGCACATAATTTTTGACATAG
AGAATGCACACTCTTCCAGATTACTCAGCAGCTATCAATGACACTTTTAAGTCATCAGCA
CTCATGACTCCGCTTTTACTTGAGCTTCTTTAAGCCTTTCCTGAAGAATTTCTAACCTTC
CAGAGGTTGGTAGCTTCAGAGCCATCAGAGCTCTTCGCAACTCTGCTTTATCCATCTGTT
TGATTTCATATTCAGTGAGAGGTTTCGCCAAGGACTTGGGTAGAGGAGGCGGCGGTGACT
CACTACCGCCCAGCATTCGTGGGGAACCTTTCCATGGTATAGTCTTTCTAGCCTCTTCAA
CAAGTCTCTCAAGCTCCTGGTAGGTGGGCTGCTGAGCCTGCCGGCCTATTAAATCACTAG
TGCCATCCCCAGCCATGAGGT
■■Homology search results ■■ -
sp_hit_id Q5FVR4
Definition sp|Q5FVR4|ERI1_RAT 3'-5' exoribonuclease 1 OS=Rattus norvegicus
Align length 32
Score (bit) 30.0
E-value 7.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912866|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_G04.
(543 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5FVR4|ERI1_RAT 3'-5' exoribonuclease 1 OS=Rattus norvegicus ... 30 7.6
sp|Q7TMF2|ERI1_MOUSE 3'-5' exoribonuclease 1 OS=Mus musculus GN=... 30 7.6
sp|Q8IV48|ERI1_HUMAN 3'-5' exoribonuclease 1 OS=Homo sapiens GN=... 30 7.6
sp|A8K0R7|ZN839_HUMAN Zinc finger protein 839 OS=Homo sapiens GN... 30 9.9
sp|Q3ZAI8|SYH_DEHE1 Histidyl-tRNA synthetase OS=Dehalococcoides ... 30 9.9

>sp|Q5FVR4|ERI1_RAT 3'-5' exoribonuclease 1 OS=Rattus norvegicus
GN=Eri1 PE=2 SV=1
Length = 345

Score = 30.0 bits (66), Expect = 7.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3

Query: 346 IKQMDKAELRRALMALKLPTSGRLEILQERLK 251
I +M K ELR L KL T G ++L++RLK
Sbjct: 72 INRMSKEELRAKLSEFKLETRGVKDVLKKRLK 103


>sp|Q7TMF2|ERI1_MOUSE 3'-5' exoribonuclease 1 OS=Mus musculus
GN=Eri1 PE=1 SV=2
Length = 345

Score = 30.0 bits (66), Expect = 7.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3

Query: 346 IKQMDKAELRRALMALKLPTSGRLEILQERLK 251
I +M K ELR L KL T G ++L++RLK
Sbjct: 72 INRMSKEELRAKLSEFKLETRGVKDVLKKRLK 103


>sp|Q8IV48|ERI1_HUMAN 3'-5' exoribonuclease 1 OS=Homo sapiens
GN=ERI1 PE=1 SV=3
Length = 349

Score = 30.0 bits (66), Expect = 7.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3

Query: 346 IKQMDKAELRRALMALKLPTSGRLEILQERLK 251
I +M K ELR L KL T G ++L++RLK
Sbjct: 76 INRMSKEELRAKLSEFKLETRGVKDVLKKRLK 107


>sp|A8K0R7|ZN839_HUMAN Zinc finger protein 839 OS=Homo sapiens
GN=ZNF839 PE=2 SV=1
Length = 811

Score = 29.6 bits (65), Expect = 9.9
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +3

Query: 285 EVGSFRAIRALRNSALSICLISYSVRGFAKDLGRGGGGDSLPPSIRGEPFH 437
+V +F AL +S+ S GF L GGG +SLPP G P H
Sbjct: 603 QVAAFPGENALEHSSDQDTWDSLRSPGFCSPLSSGGGAESLPP---GGPGH 650


>sp|Q3ZAI8|SYH_DEHE1 Histidyl-tRNA synthetase OS=Dehalococcoides
ethenogenes (strain 195) GN=hisS PE=3 SV=1
Length = 418

Score = 29.6 bits (65), Expect = 9.9
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3

Query: 270 ISNLPEVGSFRAIRALRNSALSICLISYSVRGFAKDLGRGGGGDSLPPSIRGEPFHGIVF 449
+ +LP +FR +R L + ++ I + G +G GG D L + GEP I F
Sbjct: 243 VVDLPFHENFRLVRGLDYYSRTVFEIQPRIEGAQSTIGGGGRYDGLIEQLGGEPTPAIGF 302


tr_hit_id Q01BZ3
Definition tr|Q01BZ3|Q01BZ3_OSTTA Serine/threonine protein phosphatase (ISS) OS=Ostreococcus tauri
Align length 42
Score (bit) 33.1
E-value 9.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912866|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_G04.
(543 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q01BZ3|Q01BZ3_OSTTA Serine/threonine protein phosphatase (ISS... 33 9.7

>tr|Q01BZ3|Q01BZ3_OSTTA Serine/threonine protein phosphatase (ISS)
OS=Ostreococcus tauri GN=Ot03g05120 PE=4 SV=1
Length = 408

Score = 33.1 bits (74), Expect = 9.7
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = -3

Query: 358 TEYEIKQMDKAELRRALMALKLPTSGRLEILQERLKEAQVKA 233
T ++ MD +R+ L LP+SG+LE L++RL A+VKA
Sbjct: 368 TRAQVDSMDAPTIRKLLQERGLPSSGKLERLRDRL--AEVKA 407