NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912868
Clone id YMU001_000023_G06
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATACTGCAAGATCAGAGCCGTCTGTGGAACATGAGGCAGAAAATGTAAAGCAGACAATGC
TGCAACATGAGTCTGTATTCAAAGAGCAGTTACACGAGCTGCACCGGCTTTATCAAAAGC
AGTGTATGCTGATGGCAGAGTCCAATAAAGATCCTTCTTGTGACCTGCGTGCCAGAGCCT
CCATCGTCAAATGGTTCATTTTTATGCAATCCAGAGACCTTACGATTGCATGAGGAGCGA
AGCTTTGGTAATGCAAGTTCCACAAAGGGTTTTGAGAACAACCAAAGCTATCGTGCTCTT
CTTGGTAGGATGGATGATGTGAAGCGCTTCGAGGATAGTGGATCGAGCGGAAAACCAAGC
AGTCACCTATTGACTGAAGTTTATACATCGAGGCCAAAATCAAGGCAGACACCAGATGTT
CGACTTGGAGAAACCTCCCCCGTATCGCCCGATACTCGATCTAGAGCGCCCAGCTGATGA
GTATATGGATGTGGAAGTGCATGAAGAGA
■■Homology search results ■■ -
sp_hit_id Q54GS8
Definition sp|Q54GS8|TF3C5_DICDI General transcription factor 3C polypeptide 5 OS=Dictyostelium discoideum
Align length 77
Score (bit) 34.3
E-value 0.35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912868|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_G06.
         (509 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54GS8|TF3C5_DICDI General transcription factor 3C polypeptid...    34   0.35 
sp|O60293|ZC3H1_HUMAN Zinc finger C3H1 domain-containing protein...    33   0.78 
sp|O15550|UTX_HUMAN Histone demethylase UTX OS=Homo sapiens GN=U...    32   1.7  
sp|Q6B4Z3|UTY_PANTR Histone demethylase UTY OS=Pan troglodytes G...    32   2.3  
sp|O14607|UTY_HUMAN Histone demethylase UTY OS=Homo sapiens GN=U...    32   2.3  
sp|O70546|UTX_MOUSE Histone demethylase UTX OS=Mus musculus GN=U...    32   2.3  
sp|A0R2B1|KGD_MYCS2 2-oxoglutarate decarboxylase OS=Mycobacteriu...    31   3.9  
sp|Q27309|VIT_BOMMO Vitellogenin OS=Bombyx mori GN=VG PE=1 SV=1        30   6.6  
sp|Q8VD90|RNS1G_RATFU Ribonuclease pancreatic gamma-type OS=Ratt...    30   6.6  
sp|Q499A3|KTU_DANRE Protein kintoun OS=Danio rerio GN=ktu PE=2 SV=1    30   6.6  

>sp|Q54GS8|TF3C5_DICDI General transcription factor 3C polypeptide 5
           OS=Dictyostelium discoideum GN=gtf3c5 PE=3 SV=1
          Length = 865

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +1

Query: 235 ERSFGNASSTKGFENNQSYRALLGRMDDVKRFEDSGSSGKPSSHLLTEVYTSRPKSRQTP 414
           ++ FG  S +   E  +  +A  G MD+  RF+   S    S+   T   +++PKS Q  
Sbjct: 643 QKKFGWFSESSFREGLERMKARFGVMDNKMRFK---SRSNTSTATTTSTKSTQPKSTQPK 699

Query: 415 DVRLGETSPVSPDTRSR 465
           + +L  T P  P  + R
Sbjct: 700 EPKLKSTQPKEPRPKGR 716


>sp|O60293|ZC3H1_HUMAN Zinc finger C3H1 domain-containing protein
           OS=Homo sapiens GN=ZFC3H1 PE=1 SV=3
          Length = 1989

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = +1

Query: 184 SSNGSFLCNPETLRLHEERSFGNASSTKGFENNQSYRALLGRMDDVKRFEDSGSSGKPSS 363
           SS G  L  P     H  R  G+        ++ S +  L      +   + G    PSS
Sbjct: 44  SSGGGLLPYPRRRPPHSARGGGSGGGGGSSSSSSSSQQQLRNFSRSRHASERGHLRGPSS 103

Query: 364 HLLTEVYTSRPKSRQTPDVRLGETSP 441
           +   E + S P S + P   L E+SP
Sbjct: 104 YRPKEPFRSHPPSVRMPSSSLSESSP 129


>sp|O15550|UTX_HUMAN Histone demethylase UTX OS=Homo sapiens GN=UTX
           PE=1 SV=2
          Length = 1401

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 191 MVHFYAIQRPYDCMRSEALVMQVPQRVLRTTKAIVLFLVGWMM*SASRIVDRA--ENQAV 364
           + H Y  QR Y   +     +   + +    KA VL  +GWM  +   + D+A  E+ A+
Sbjct: 211 IAHLYETQRKYHSAKEAYEQLLQTENLSAQVKATVLQQLGWMHHTVDLLGDKATKESYAI 270

Query: 365 TY*LKFIHRGQNQGRHQMF 421
            Y  K +    N G+   F
Sbjct: 271 QYLQKSLEADPNSGQSWYF 289


>sp|Q6B4Z3|UTY_PANTR Histone demethylase UTY OS=Pan troglodytes
           GN=UTY PE=2 SV=1
          Length = 1079

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 191 MVHFYAIQRPYDCMRSEALVMQVPQRVLRTTKAIVLFLVGWMM*SASRIVDRA--ENQAV 364
           + H Y  QR Y   +     +   + +    KA VL  +GWM  +   + D+A  E+ A+
Sbjct: 208 IAHLYETQRKYHSAKEAYEQLLQTENLPAQVKATVLQQLGWMHHNMDLVGDKATKESYAI 267

Query: 365 TY*LKFIHRGQNQGRHQMF 421
            Y  K +    N G+   F
Sbjct: 268 PYLQKSLEADPNSGQSWYF 286


>sp|O14607|UTY_HUMAN Histone demethylase UTY OS=Homo sapiens GN=UTY
           PE=1 SV=1
          Length = 1347

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 191 MVHFYAIQRPYDCMRSEALVMQVPQRVLRTTKAIVLFLVGWMM*SASRIVDRA--ENQAV 364
           + H Y  QR Y   +     +   + +    KA VL  +GWM  +   + D+A  E+ A+
Sbjct: 208 IAHLYETQRKYHSAKEAYEQLLQTENLPAQVKATVLQQLGWMHHNMDLVGDKATKESYAI 267

Query: 365 TY*LKFIHRGQNQGRHQMF 421
            Y  K +    N G+   F
Sbjct: 268 QYLQKSLEADPNSGQSWYF 286


>sp|O70546|UTX_MOUSE Histone demethylase UTX OS=Mus musculus GN=Utx
           PE=1 SV=2
          Length = 1401

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 191 MVHFYAIQRPYDCMRSEALVMQVPQRVLRTTKAIVLFLVGWMM*SASRIVDRA--ENQAV 364
           + H Y  QR Y   +     +   + +    KA +L  +GWM  +   + D+A  E+ A+
Sbjct: 213 IAHLYETQRKYHSAKEAYEQLLQTENLSAQVKATILQQLGWMHHTVDLLGDKATKESYAI 272

Query: 365 TY*LKFIHRGQNQGRHQMF 421
            Y  K +    N G+   F
Sbjct: 273 QYLQKSLEADPNSGQSWYF 291


>sp|A0R2B1|KGD_MYCS2 2-oxoglutarate decarboxylase OS=Mycobacterium
           smegmatis GN=kgd PE=3 SV=1
          Length = 1227

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 322 KRFEDSGSSGKPSSHLLTEVYTSRPKSRQTPDVRLGETSPVSPDTRSRAPS 474
           ++F D  SS  PS H     Y+  P +    + R    +PV+P T + AP+
Sbjct: 20  RKFRDDPSSVDPSWHEFLVDYSPEPTTDSASNGRTTTAAPVTPPTPAPAPA 70


>sp|Q27309|VIT_BOMMO Vitellogenin OS=Bombyx mori GN=VG PE=1 SV=1
          Length = 1782

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
 Frame = +3

Query: 9    RSEPSVEHEAENVKQTMLQHESVFKEQLHELHR----------LYQKQCMLMAESNKDPS 158
            RS+P+ + E+++  +   Q E+V+K + ++ H+           Y+    +   +++ PS
Sbjct: 1664 RSDPTWQEESQSCGEDQWQSETVYKSRSYDKHKGACEVRQQVQFYENHGDICITTSRVPS 1723

Query: 159  CDLRARASIVK 191
            C    RA   K
Sbjct: 1724 CQSHCRAGDYK 1734


>sp|Q8VD90|RNS1G_RATFU Ribonuclease pancreatic gamma-type OS=Rattus
           fuscipes PE=3 SV=1
          Length = 152

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 373 SIGDCLVFRSIHYPRSASHHPSYQEEHDSFGCSQNPLWNLHYQS 242
           +I DCL+  S  YP+   +  + +++H    C  NP   +HY +
Sbjct: 108 NITDCLLMGSSKYPK-CDYSTTARQKHSIIACDGNPYVPVHYDA 150


>sp|Q499A3|KTU_DANRE Protein kintoun OS=Danio rerio GN=ktu PE=2 SV=1
          Length = 566

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/48 (35%), Positives = 31/48 (64%)
 Frame = +1

Query: 289 YRALLGRMDDVKRFEDSGSSGKPSSHLLTEVYTSRPKSRQTPDVRLGE 432
           YR++L  + D +   DSGS+G+P++ ++ EV   R +S Q  ++R+ E
Sbjct: 303 YRSVLD-LQDYRCCRDSGSAGRPTA-IIIEVEVPRLRSAQEAELRVEE 348
tr_hit_id Q9C520
Definition tr|Q9C520|Q9C520_ARATH Putative uncharacterized protein F10D13.5 (Putative uncharacterized protein F23O10.6) OS=Arabidopsis thaliana
Align length 41
Score (bit) 53.1
E-value 7.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912868|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_G06.
         (509 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9C520|Q9C520_ARATH Putative uncharacterized protein F10D13.5...    53   7e-06
tr|Q93YS3|Q93YS3_ARATH Putative uncharacterized protein At1g6936...    53   7e-06
tr|A7P2J8|A7P2J8_VITVI Chromosome chr1 scaffold_5, whole genome ...    52   1e-05
tr|A5AY97|A5AY97_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|Q5Z8I6|Q5Z8I6_ORYSJ Os06g0694400 protein OS=Oryza sativa subs...    50   6e-05
tr|B8B269|B8B269_ORYSI Putative uncharacterized protein OS=Oryza...    50   6e-05
tr|A3BEY9|A3BEY9_ORYSJ Putative uncharacterized protein OS=Oryza...    50   6e-05
tr|Q6AUY2|Q6AUY2_ORYSJ Putative uncharacterized protein OSJNBa00...    48   2e-04
tr|B8AM62|B8AM62_ORYSI Putative uncharacterized protein OS=Oryza...    48   2e-04
tr|A3AK93|A3AK93_ORYSJ Putative uncharacterized protein OS=Oryza...    48   2e-04
tr|Q9FZE6|Q9FZE6_ARATH T1K7.1 protein OS=Arabidopsis thaliana GN...    47   4e-04
tr|Q2QN61|Q2QN61_ORYSJ Os12g0577800 protein OS=Oryza sativa subs...    47   4e-04
tr|Q0WVP5|Q0WVP5_ARATH Putative uncharacterized protein At1g2662...    47   4e-04
tr|A2ZM02|A2ZM02_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|A7PLN3|A7PLN3_VITVI Chromosome chr7 scaffold_20, whole genome...    47   5e-04
tr|Q2VCL2|Q2VCL2_SOLTU Putative uncharacterized protein OS=Solan...    47   7e-04
tr|B6U160|B6U160_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.001
tr|B4FYH0|B4FYH0_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.001
tr|Q10EU0|Q10EU0_ORYSJ Os03g0762100 protein OS=Oryza sativa subs...    45   0.002
tr|B8AK93|B8AK93_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|Q9FLK3|Q9FLK3_ARATH Gb|AAF67766.1 OS=Arabidopsis thaliana GN=...    45   0.002
tr|Q9AUW2|Q9AUW2_ORYSJ Putative uncharacterized protein OSJNBa00...    45   0.002
tr|Q8W5H9|Q8W5H9_ORYSJ Putative uncharacterized protein OSJNBa00...    45   0.002
tr|B6TW97|B6TW97_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.002
tr|A2XM65|A2XM65_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|B6SZ16|B6SZ16_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.003
tr|B6TNK3|B6TNK3_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.003
tr|Q9FF13|Q9FF13_ARATH Gb|AAF67766.1 OS=Arabidopsis thaliana GN=...    44   0.005
tr|Q8VXX2|Q8VXX2_ARATH Putative uncharacterized protein At5g0779...    44   0.005
tr|B6SUB3|B6SUB3_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.005

>tr|Q9C520|Q9C520_ARATH Putative uncharacterized protein F10D13.5
           (Putative uncharacterized protein F23O10.6)
           OS=Arabidopsis thaliana GN=F23O10.6 PE=4 SV=1
          Length = 910

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 24/41 (58%), Positives = 33/41 (80%)
 Frame = +3

Query: 18  PSVEHEAENVKQTMLQHESVFKEQLHELHRLYQKQCMLMAE 140
           P+  +E + +KQTML+HE+VFK Q++ELHRLY+ Q  LMAE
Sbjct: 65  PTDSYERDFLKQTMLEHEAVFKNQVYELHRLYRTQKSLMAE 105


>tr|Q93YS3|Q93YS3_ARATH Putative uncharacterized protein At1g69360
           OS=Arabidopsis thaliana GN=At1g69360 PE=2 SV=1
          Length = 896

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 24/41 (58%), Positives = 33/41 (80%)
 Frame = +3

Query: 18  PSVEHEAENVKQTMLQHESVFKEQLHELHRLYQKQCMLMAE 140
           P+  +E + +KQTML+HE+VFK Q++ELHRLY+ Q  LMAE
Sbjct: 51  PTDSYERDFLKQTMLEHEAVFKNQVYELHRLYRTQKSLMAE 91


>tr|A7P2J8|A7P2J8_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030082001
           PE=4 SV=1
          Length = 880

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 22/37 (59%), Positives = 32/37 (86%)
 Frame = +3

Query: 30  HEAENVKQTMLQHESVFKEQLHELHRLYQKQCMLMAE 140
           ++ + +KQTML+HE++FK+Q+HELHRLY+KQ  LM E
Sbjct: 59  YDKDVLKQTMLEHEAIFKDQVHELHRLYRKQRNLMDE 95


>tr|A5AY97|A5AY97_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_009459 PE=4 SV=1
          Length = 1250

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 22/37 (59%), Positives = 32/37 (86%)
 Frame = +3

Query: 30  HEAENVKQTMLQHESVFKEQLHELHRLYQKQCMLMAE 140
           ++ + +KQTML+HE++FK+Q+HELHRLY+KQ  LM E
Sbjct: 161 YDKDVLKQTMLEHEAIFKDQVHELHRLYRKQRNLMDE 197


>tr|Q5Z8I6|Q5Z8I6_ORYSJ Os06g0694400 protein OS=Oryza sativa subsp.
           japonica GN=P0622F03.3 PE=2 SV=1
          Length = 243

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 21/42 (50%), Positives = 33/42 (78%)
 Frame = +3

Query: 15  EPSVEHEAENVKQTMLQHESVFKEQLHELHRLYQKQCMLMAE 140
           E S +   E+V++T+++H+ VF++Q+HELHRLY+ Q  LMAE
Sbjct: 65  EKSKQDSRESVRRTIMEHDEVFRQQVHELHRLYRVQKSLMAE 106


>tr|B8B269|B8B269_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24299 PE=4 SV=1
          Length = 243

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 21/42 (50%), Positives = 33/42 (78%)
 Frame = +3

Query: 15  EPSVEHEAENVKQTMLQHESVFKEQLHELHRLYQKQCMLMAE 140
           E S +   E+V++T+++H+ VF++Q+HELHRLY+ Q  LMAE
Sbjct: 65  EKSKQDSRESVRRTIMEHDEVFRQQVHELHRLYRVQKSLMAE 106


>tr|A3BEY9|A3BEY9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021611 PE=4 SV=1
          Length = 236

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 21/42 (50%), Positives = 33/42 (78%)
 Frame = +3

Query: 15  EPSVEHEAENVKQTMLQHESVFKEQLHELHRLYQKQCMLMAE 140
           E S +   E+V++T+++H+ VF++Q+HELHRLY+ Q  LMAE
Sbjct: 58  EKSKQDSRESVRRTIMEHDEVFRQQVHELHRLYRVQKSLMAE 99


>tr|Q6AUY2|Q6AUY2_ORYSJ Putative uncharacterized protein
           OSJNBa0004G03.14 (Expressed protein) OS=Oryza sativa
           subsp. japonica GN=OSJNBa0004G03.14 PE=4 SV=1
          Length = 302

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
 Frame = +3

Query: 33  EAENVKQTMLQHESVFKEQLHELHRLYQKQCMLMAESNKDP---SCDLRAR 176
           + E +K  ML+HE  FK+Q++ELHRLY+ Q  LM++ N+ P   +C  R R
Sbjct: 117 DMEVMKMAMLKHEETFKQQVYELHRLYRVQKQLMSDLNRSPPELTCRRRQR 167


>tr|B8AM62|B8AM62_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12547 PE=4 SV=1
          Length = 198

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
 Frame = +3

Query: 33  EAENVKQTMLQHESVFKEQLHELHRLYQKQCMLMAESNKDP---SCDLRAR 176
           + E +K  ML+HE  FK+Q++ELHRLY+ Q  LM++ N+ P   +C  R R
Sbjct: 13  DMEVMKMAMLKHEETFKQQVYELHRLYRVQKQLMSDLNRSPPELTCRRRQR 63


>tr|A3AK93|A3AK93_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011215 PE=4 SV=1
          Length = 103

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
 Frame = +3

Query: 33  EAENVKQTMLQHESVFKEQLHELHRLYQKQCMLMAESNKDP---SCDLRAR 176
           + E +K  ML+HE  FK+Q++ELHRLY+ Q  LM++ N+ P   +C  R R
Sbjct: 9   DMEVMKMAMLKHEETFKQQVYELHRLYRVQKQLMSDLNRSPPELTCRRRQR 59