BP912870
Clone id YMU001_000023_G08
Library
Length 166
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TATGTTATCCTATCCAATATGTATGTGGCTGCTGGTAGGGACTCAGATGCGGAGAGGCTT
CTATCAAGGATGAAGGAAAAGGGCTTGATGCAGTCGGGAGAGTGCATCTACATTGAGGTG
GATGGAGTGGTGAAGAAGTTTTCTTGTGACGATCGATCCGATCCTC
■■Homology search results ■■ -
sp_hit_id Q9FND6
Definition sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana
Align length 55
Score (bit) 50.1
E-value 4.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912870|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_G08.
(166 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protei... 50 4e-06
sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protei... 49 8e-06
sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protei... 48 1e-05
sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protei... 46 5e-05
sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protei... 45 9e-05
sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protei... 44 2e-04
sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protei... 44 2e-04
sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protei... 44 3e-04
sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containi... 44 3e-04
sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containi... 43 4e-04
sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protei... 43 4e-04
sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protei... 43 6e-04
sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protei... 42 7e-04
sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protei... 42 7e-04
sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protei... 42 7e-04
sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containi... 42 0.001
sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protei... 42 0.001
sp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protei... 42 0.001
sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protei... 41 0.002
sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protei... 41 0.002
sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protei... 41 0.002
sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protei... 40 0.003
sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containi... 40 0.004
sp|Q9FK33|PP427_ARATH Pentatricopeptide repeat-containing protei... 40 0.005
sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protei... 40 0.005
sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protei... 40 0.005
sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protei... 40 0.005
sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protei... 40 0.005
sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protei... 39 0.006
sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containi... 39 0.006

>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein
At5g40410, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-H15 PE=2 SV=1
Length = 608

Score = 50.1 bits (118), Expect = 4e-06
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
YV+LSN+Y A+G DA R+ + MK+KGL+++ C YIE + KF D S P
Sbjct: 441 YVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHP 495


>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein
At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646

Score = 48.9 bits (115), Expect = 8e-06
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
YV LSNMY + G S+ + RMKEK + + C I++DGV+ +F +D S P
Sbjct: 480 YVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHP 534


>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein
At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960

Score = 48.1 bits (113), Expect = 1e-05
Identities = 21/54 (38%), Positives = 36/54 (66%)
Frame = +1

Query: 4 VILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
V++SN++ GR +D E++ ++MK G+ + C +IE+DG V KF+ D+S P
Sbjct: 794 VLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHP 847


>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-H87 PE=2 SV=1
Length = 633

Score = 46.2 bits (108), Expect = 5e-05
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
+VIL N+Y + GR +DA R+ +MKE G+ + C ++E++ + F +D P
Sbjct: 467 HVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHP 521


>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein
At3g49170, chloroplastic OS=Arabidopsis thaliana
GN=EMB2261 PE=2 SV=1
Length = 850

Score = 45.4 bits (106), Expect = 9e-05
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
Y+ LSN+Y AG+ ++ + +MKE+ L++ G C +IEV + KF D + P
Sbjct: 680 YIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHP 734


>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein
At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741

Score = 44.3 bits (103), Expect = 2e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
YV+LSN+Y +AGR ++ + + + +KG+ + C IE+D VV +F D+ P
Sbjct: 575 YVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 629


>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein
At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573

Score = 44.3 bits (103), Expect = 2e-04
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRS 159
YV+LSN+Y GR + + + M+ KG+ + C Y+EV+GVV +F D S
Sbjct: 407 YVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDES 459


>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein
At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842

Score = 43.9 bits (102), Expect = 3e-04
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
YV+LSN+Y +AGR +D ++ MKEKGL + I++ G +F+ D S P
Sbjct: 676 YVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHP 730


>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing
protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32
PE=3 SV=1
Length = 715

Score = 43.5 bits (101), Expect = 3e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
YV++ NMY + GR + +L RM++KGL + C +IE+ F DRS P
Sbjct: 549 YVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHP 603


>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing
protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77
PE=3 SV=1
Length = 686

Score = 43.1 bits (100), Expect = 4e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
YV+LSN+Y AGR + + + MK KGL ++ +EV+ ++ F DRS P
Sbjct: 515 YVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHP 569


tr_hit_id A7PCR5
Definition tr|A7PCR5|A7PCR5_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera
Align length 51
Score (bit) 51.6
E-value 2.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912870|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_G08.
(166 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7PCR5|A7PCR5_VITVI Chromosome chr17 scaffold_12, whole genom... 52 2e-05
tr|A7Q9X6|A7Q9X6_VITVI Chromosome chr8 scaffold_68, whole genome... 50 4e-05
tr|A5BJS3|A5BJS3_VITVI Putative uncharacterized protein OS=Vitis... 50 4e-05
tr|A7NXI5|A7NXI5_VITVI Chromosome chr5 scaffold_2, whole genome ... 50 6e-05
tr|A7QN82|A7QN82_VITVI Chromosome undetermined scaffold_131, who... 50 7e-05
tr|A7PM57|A7PM57_VITVI Chromosome chr14 scaffold_21, whole genom... 50 7e-05
tr|A5BSN6|A5BSN6_VITVI Putative uncharacterized protein OS=Vitis... 50 7e-05
tr|A7P8G3|A7P8G3_VITVI Chromosome chr3 scaffold_8, whole genome ... 49 2e-04
tr|Q9FU66|Q9FU66_ORYSJ Putative uncharacterized protein P0013F10... 48 2e-04
tr|Q2QYR0|Q2QYR0_ORYSJ Pentatricopeptide, putative, expressed OS... 48 2e-04
tr|Q0IQP0|Q0IQP0_ORYSJ Os12g0109300 protein OS=Oryza sativa subs... 48 2e-04
tr|A7PXL1|A7PXL1_VITVI Chromosome chr12 scaffold_36, whole genom... 48 3e-04
tr|A7P4F3|A7P4F3_VITVI Chromosome chr4 scaffold_6, whole genome ... 48 3e-04
tr|A7P2H4|A7P2H4_VITVI Chromosome chr1 scaffold_5, whole genome ... 48 3e-04
tr|Q7XTJ8|Q7XTJ8_ORYSJ Os04g0118700 protein OS=Oryza sativa subs... 47 4e-04
tr|Q6F363|Q6F363_ORYSJ Os05g0574800 protein OS=Oryza sativa subs... 47 4e-04
tr|Q0J6X9|Q0J6X9_ORYSJ Os08g0249600 protein OS=Oryza sativa subs... 47 4e-04
tr|Q01MK6|Q01MK6_ORYSA H0613H07.7 protein (H0716A07.2 protein) O... 47 4e-04
tr|B8B8R2|B8B8R2_ORYSI Putative uncharacterized protein OS=Oryza... 47 4e-04
tr|B8AX86|B8AX86_ORYSI Putative uncharacterized protein OS=Oryza... 47 4e-04
tr|B4FKV9|B4FKV9_MAIZE Putative uncharacterized protein OS=Zea m... 47 4e-04
tr|A7R8M9|A7R8M9_VITVI Chromosome undetermined scaffold_2768, wh... 47 4e-04
tr|A7R2Y4|A7R2Y4_VITVI Chromosome undetermined scaffold_465, who... 47 4e-04
tr|A7Q172|A7Q172_VITVI Chromosome chr10 scaffold_43, whole genom... 47 4e-04
tr|A7P6T0|A7P6T0_VITVI Chromosome chr9 scaffold_7, whole genome ... 47 4e-04
tr|A3BR65|A3BR65_ORYSJ Putative uncharacterized protein OS=Oryza... 47 4e-04
tr|A3AQB6|A3AQB6_ORYSJ Putative uncharacterized protein OS=Oryza... 47 4e-04
tr|A2XPS9|A2XPS9_ORYSI Putative uncharacterized protein OS=Oryza... 47 4e-04
tr|Q650U4|Q650U4_ORYSJ Putative uncharacterized protein P0669G04... 46 8e-04
tr|A9RJW2|A9RJW2_PHYPA Predicted protein OS=Physcomitrella paten... 46 8e-04

>tr|A7PCR5|A7PCR5_VITVI Chromosome chr17 scaffold_12, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00015978001
PE=4 SV=1
Length = 698

Score = 51.6 bits (122), Expect = 2e-05
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDD 153
Y++LSN+Y + GR DA ++ MKEKG+ ++ C IE+DGV+ +F +D
Sbjct: 532 YILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAED 582


>tr|A7Q9X6|A7Q9X6_VITVI Chromosome chr8 scaffold_68, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00033662001
PE=4 SV=1
Length = 747

Score = 50.4 bits (119), Expect = 4e-05
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
YV+LSN+Y AAGR DA +L M++KG+ + C +IE+ V F D+S P
Sbjct: 535 YVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHP 589


>tr|A5BJS3|A5BJS3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_032008 PE=4 SV=1
Length = 679

Score = 50.4 bits (119), Expect = 4e-05
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
YV+LSN+Y AAGR DA +L M++KG+ + C +IE+ V F D+S P
Sbjct: 503 YVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHP 557


>tr|A7NXI5|A7NXI5_VITVI Chromosome chr5 scaffold_2, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020348001
PE=4 SV=1
Length = 691

Score = 50.1 bits (118), Expect = 6e-05
Identities = 23/55 (41%), Positives = 36/55 (65%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
Y+IL+ MY+++G+ DAER+ RM+EKG+ + C ++EV+G F D S P
Sbjct: 595 YIILAEMYLSSGKREDAERVWVRMREKGVKKQPACSWMEVNGSGHVFLSGDSSHP 649


>tr|A7QN82|A7QN82_VITVI Chromosome undetermined scaffold_131, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00002423001 PE=4 SV=1
Length = 500

Score = 49.7 bits (117), Expect = 7e-05
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
YV++SN+Y +A R DA +L MKE+ L ++ C IE+DGV+ +F D+S P
Sbjct: 417 YVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHP 471


>tr|A7PM57|A7PM57_VITVI Chromosome chr14 scaffold_21, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020692001
PE=4 SV=1
Length = 728

Score = 49.7 bits (117), Expect = 7e-05
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRS 159
YV+LSN+Y +AGR D + M+EKGL +SG C ++EV V F +D S
Sbjct: 655 YVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFYSEDGS 707


>tr|A5BSN6|A5BSN6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_001173 PE=4 SV=1
Length = 728

Score = 49.7 bits (117), Expect = 7e-05
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRS 159
YV+LSN+Y +AGR D + M+EKGL +SG C ++EV V F +D S
Sbjct: 655 YVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFYSEDGS 707


>tr|A7P8G3|A7P8G3_VITVI Chromosome chr3 scaffold_8, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00036169001
PE=4 SV=1
Length = 802

Score = 48.5 bits (114), Expect = 2e-04
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSD 162
YV+LSNMY AGR D ER+ MK++GL +S C +++ +F DRSD
Sbjct: 636 YVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSD 689


>tr|Q9FU66|Q9FU66_ORYSJ Putative uncharacterized protein P0013F10.12
(Putative uncharacterized protein) (Os01g0176300
protein) OS=Oryza sativa subsp. japonica GN=P0013F10.12
PE=4 SV=1
Length = 665

Score = 48.1 bits (113), Expect = 2e-04
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
Y++LSNMY + R D R+ + EKG+ + C IE++G++ +F DRS P
Sbjct: 499 YILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHP 553


>tr|Q2QYR0|Q2QYR0_ORYSJ Pentatricopeptide, putative, expressed
OS=Oryza sativa subsp. japonica GN=LOC_Os12g01850 PE=4
SV=2
Length = 692

Score = 48.1 bits (113), Expect = 2e-04
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +1

Query: 1 YVILSNMYVAAGRDSDAERLLSRMKEKGLMQSGECIYIEVDGVVKKFSCDDRSDP 165
YV+LSN+Y GR DA +L MKEKG+ + C ++E +G V +F D+S P
Sbjct: 526 YVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHP 580