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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912877
Clone id YMU001_000023_H04
Library
Length 255
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATCTCGTTCTCGAGCATGCTTAGAGTCCCTTATGGTTGTTGCGTAAGTAGACCTTTTTCT
TTATTTAAAGAGCTGTTAAGACAGAGCTCGATAAAAACAAGCCACAGTCAATTTGTTTCC
ACCGTTTTGAATAGTTGCTGTTTATCTTCAGCTTCAGATTTCTACTTGGACGTAGGTTCT
TGAGAAATCCAAGAAGCCAAACATTCATATAGTGATCTGGAACAAACTCCATGAAATCTC
CATTCTGTAATGATT
■■Homology search results ■■ -
sp_hit_id Q3MHC2
Definition sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus
Align length 17
Score (bit) 33.5
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912877|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_H04.
         (255 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norv...    33   0.33 
sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abe...    33   0.33 
sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus muscu...    33   0.33 
sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapi...    33   0.33 
sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rer...    33   0.33 
sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus ga...    33   0.33 
sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos tauru...    33   0.33 
sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=D...    32   0.74 

>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus
           norvegicus GN=Cpsf3l PE=2 SV=1
          Length = 600

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATTIRDSK  RERD
Sbjct: 204 STYATTIRDSKRCRERD 220


>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii
           GN=CPSF3L PE=2 SV=2
          Length = 600

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATTIRDSK  RERD
Sbjct: 204 STYATTIRDSKRCRERD 220


>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus
           GN=Cpsf3l PE=2 SV=1
          Length = 600

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATTIRDSK  RERD
Sbjct: 204 STYATTIRDSKRCRERD 220


>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens
           GN=CPSF3L PE=1 SV=2
          Length = 600

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATTIRDSK  RERD
Sbjct: 204 STYATTIRDSKRCRERD 220


>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio
           GN=cpsf3l PE=2 SV=1
          Length = 598

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATTIRDSK  RERD
Sbjct: 204 STYATTIRDSKRCRERD 220


>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus
           gallus GN=CPSF3L PE=2 SV=1
          Length = 600

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATTIRDSK  RERD
Sbjct: 204 STYATTIRDSKRCRERD 220


>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus
           GN=CPSF3L PE=2 SV=2
          Length = 599

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATTIRDSK  RERD
Sbjct: 204 STYATTIRDSKRCRERD 220


>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog
           OS=Dictyostelium discoideum GN=ints11 PE=3 SV=1
          Length = 744

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           +TYATTIRDSK  RERD
Sbjct: 203 TTYATTIRDSKRGRERD 219
tr_hit_id B6FZG1
Definition tr|B6FZG1|B6FZG1_9CLOT Putative uncharacterized protein OS=Clostridium hiranonis DSM 13275
Align length 51
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912877|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_H04.
         (255 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6FZG1|B6FZG1_9CLOT Putative uncharacterized protein OS=Clost...    35   1.4  
tr|Q9U3K2|Q9U3K2_CAEEL Protein F10B5.8, partially confirmed by t...    35   1.9  
tr|A8WN58|A8WN58_CAEBR Putative uncharacterized protein OS=Caeno...    35   1.9  
tr|A8QG81|A8QG81_BRUMA RNA-metabolising metallo-beta-lactamase f...    35   1.9  
tr|Q6E435|Q6E435_CUCME ACT11D09.9 OS=Cucumis melo GN=ACT11D09.9 ...    34   3.2  
tr|B7FNF0|B7FNF0_MEDTR Putative uncharacterized protein (Fragmen...    34   3.2  
tr|Q6ERD4|Q6ERD4_ORYSJ Os09g0397900 protein OS=Oryza sativa subs...    34   4.2  
tr|B8BF87|B8BF87_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|A7P3V4|A7P3V4_VITVI Chromosome chr1 scaffold_5, whole genome ...    34   4.2  
tr|A5BWZ3|A5BWZ3_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|A3BYK8|A3BYK8_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|Q4S6C2|Q4S6C2_TETNG Chromosome 9 SCAF14729, whole genome shot...    33   5.5  
tr|A8Y5J3|A8Y5J3_MOUSE Cleavage and polyadenylation specific fac...    33   5.5  
tr|A2ADA4|A2ADA4_MOUSE Cleavage and polyadenylation specific fac...    33   5.5  
tr|Q9N0D6|Q9N0D6_MACFA Unnamed protein product OS=Macaca fascicu...    33   5.5  
tr|A7E3Q0|A7E3Q0_BOVIN Related to CPSF subunits 68 kDa OS=Bos ta...    33   5.5  
tr|Q9VAH9|Q9VAH9_DROME CG1972 OS=Drosophila melanogaster GN=CG19...    33   5.5  
tr|Q7Q184|Q7Q184_ANOGA AGAP009923-PA OS=Anopheles gambiae GN=AGA...    33   5.5  
tr|Q29AN7|Q29AN7_DROPS GA15164 OS=Drosophila pseudoobscura pseud...    33   5.5  
tr|Q17BY3|Q17BY3_AEDAE Cleavage and polyadenylation specificity ...    33   5.5  
tr|B7PHB3|B7PHB3_IXOSC Cleavage and polyadenylation specificity ...    33   5.5  
tr|B6PQF2|B6PQF2_BRAFL Putative uncharacterized protein OS=Branc...    33   5.5  
tr|B4R083|B4R083_DROSI GD21460 OS=Drosophila simulans GN=GD21460...    33   5.5  
tr|B4PPK8|B4PPK8_DROYA GE23879 OS=Drosophila yakuba GN=GE23879 P...    33   5.5  
tr|B4NBL1|B4NBL1_DROWI GK11920 OS=Drosophila willistoni GN=GK119...    33   5.5  
tr|B4M5T1|B4M5T1_DROVI GJ10637 OS=Drosophila virilis GN=GJ10637 ...    33   5.5  
tr|B4K612|B4K612_DROMO GI10422 OS=Drosophila mojavensis GN=GI104...    33   5.5  
tr|B4JYM6|B4JYM6_DROGR GH14325 OS=Drosophila grimshawi GN=GH1432...    33   5.5  
tr|B4HZE1|B4HZE1_DROSE GM12816 OS=Drosophila sechellia GN=GM1281...    33   5.5  
tr|B4G664|B4G664_DROPE GL23717 OS=Drosophila persimilis GN=GL237...    33   5.5  

>tr|B6FZG1|B6FZG1_9CLOT Putative uncharacterized protein
           OS=Clostridium hiranonis DSM 13275 GN=CLOHIR_01265 PE=4
           SV=1
          Length = 341

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = +1

Query: 70  ELLRQSSIKTSHSQFVSTVLNSCCLSSASDFYLDVGS*EIQEAKHSYSDLE 222
           E+L++ SI  S  +++S++   C   + SD YL+VG   ++   + + D++
Sbjct: 103 EILKEDSISLSAQEYISSLYEKCGFIAVSDVYLEVGIPHVEMEYNKFRDIK 153


>tr|Q9U3K2|Q9U3K2_CAEEL Protein F10B5.8, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=F10B5.8
           PE=2 SV=2
          Length = 608

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATTIRDSK ARERD
Sbjct: 209 STYATTIRDSKRARERD 225


>tr|A8WN58|A8WN58_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG00745 PE=4 SV=2
          Length = 652

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATTIRDSK ARERD
Sbjct: 250 STYATTIRDSKRARERD 266


>tr|A8QG81|A8QG81_BRUMA RNA-metabolising metallo-beta-lactamase
           family protein OS=Brugia malayi GN=Bm1_54785 PE=4 SV=1
          Length = 589

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATTIRDSK ARERD
Sbjct: 205 STYATTIRDSKRARERD 221


>tr|Q6E435|Q6E435_CUCME ACT11D09.9 OS=Cucumis melo GN=ACT11D09.9
           PE=4 SV=1
          Length = 708

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATTIRDSK+ARER+
Sbjct: 235 STYATTIRDSKYARERE 251


>tr|B7FNF0|B7FNF0_MEDTR Putative uncharacterized protein (Fragment)
           OS=Medicago truncatula PE=2 SV=1
          Length = 230

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATTIRDSK+ARER+
Sbjct: 203 STYATTIRDSKYARERE 219


>tr|Q6ERD4|Q6ERD4_ORYSJ Os09g0397900 protein OS=Oryza sativa subsp.
           japonica GN=OJ1655_B12.22 PE=4 SV=1
          Length = 559

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYA T+RDSKHARER+
Sbjct: 206 STYAKTVRDSKHARERE 222


>tr|B8BF87|B8BF87_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_31281 PE=4 SV=1
          Length = 559

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYA T+RDSKHARER+
Sbjct: 206 STYAKTVRDSKHARERE 222


>tr|A7P3V4|A7P3V4_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030591001
           PE=4 SV=1
          Length = 636

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/17 (82%), Positives = 17/17 (100%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATT+RDSK+ARER+
Sbjct: 205 STYATTVRDSKYARERE 221


>tr|A5BWZ3|A5BWZ3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012700 PE=4 SV=1
          Length = 344

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/17 (82%), Positives = 17/17 (100%)
 Frame = -1

Query: 51  STYATTIRDSKHARERD 1
           STYATT+RDSK+ARER+
Sbjct: 266 STYATTVRDSKYARERE 282