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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912883
Clone id YMU001_000023_H10
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000023_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGTGGTTTGTTTTTAACAAAAAGGTAATCTATATCTACGTTCACTCCTCTGAAACATAT
TATTTGGCATAGGGTCTGAAGCTATGAGGGTATAAGAAGTGTTAAATTAGGTGAAGAGGG
TGCCTCTGCATCAATAGTGATCTATCTTTTCCAGTACATAGTGGATTCGGACAGAGGGAC
AGATAGCAGGACATTAAGTCTGTCTGTGTATAAGCTTGGACAGATTTGAGATTAATACTA
GATGATTTGAAATTCATATTAGATGGTGGCACATTAAACCGGTCCATGTATAGGCATGAC
ACCTATTCTATTGTTCCATAATCAATTGAGTGGTGTCTTTCTTGTGCGGACTAAATGCTT
GTCATCCATGATGCTTGCACACAAACCCCAAGATAATGAATCTTGGCACCCATCTACAAA
GCCTCACCGGTGTGGAATTGCTCGAATCGTTCTGTCGAGTTTCGATGCTTAGTGCTTATA
AATGAGCATGTGCA
■■Homology search results ■■ -
sp_hit_id Q9R9J0
Definition sp|Q9R9J0|MYCB_BACSU Mycosubtilin synthetase subunit B OS=Bacillus subtilis
Align length 24
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912883|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_H10.
         (494 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9R9J0|MYCB_BACSU Mycosubtilin synthetase subunit B OS=Bacill...    32   1.6  
sp|Q03L30|COAA_STRTD Pantothenate kinase OS=Streptococcus thermo...    31   2.7  
sp|Q5M4T8|COAA_STRT2 Pantothenate kinase OS=Streptococcus thermo...    31   2.7  
sp|Q5M079|COAA_STRT1 Pantothenate kinase OS=Streptococcus thermo...    31   2.7  
sp|Q09382|YS86_CAEEL Uncharacterized protein ZK945.6 OS=Caenorha...    30   7.9  
sp|P01087|IAAT_ELECO Alpha-amylase/trypsin inhibitor OS=Eleusine...    30   7.9  

>sp|Q9R9J0|MYCB_BACSU Mycosubtilin synthetase subunit B OS=Bacillus
            subtilis GN=mycB PE=3 SV=1
          Length = 5369

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 266  PSNMNFKSSSINLKSVQAYTQTDL 195
            P N+NF  + IN+K  QAY +TD+
Sbjct: 3392 PENLNFSGTCINMKEEQAYHETDI 3415


>sp|Q03L30|COAA_STRTD Pantothenate kinase OS=Streptococcus
           thermophilus (strain ATCC BAA-491 / LMD-9) GN=coaA PE=3
           SV=1
          Length = 306

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 223 DLRLILDDLKFILDGGTLNRSMYRHDTYSIVP 318
           D+ L+L+ L  + +GG +N  +Y H+ Y IVP
Sbjct: 148 DMPLLLNFLDTVKNGGDVNIPVYSHEIYDIVP 179


>sp|Q5M4T8|COAA_STRT2 Pantothenate kinase OS=Streptococcus
           thermophilus (strain ATCC BAA-250 / LMG 18311) GN=coaA
           PE=3 SV=1
          Length = 306

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 223 DLRLILDDLKFILDGGTLNRSMYRHDTYSIVP 318
           D+ L+L+ L  + +GG +N  +Y H+ Y IVP
Sbjct: 148 DMPLLLNFLDTVKNGGDVNIPVYSHEIYDIVP 179


>sp|Q5M079|COAA_STRT1 Pantothenate kinase OS=Streptococcus
           thermophilus (strain CNRZ 1066) GN=coaA PE=3 SV=1
          Length = 306

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 223 DLRLILDDLKFILDGGTLNRSMYRHDTYSIVP 318
           D+ L+L+ L  + +GG +N  +Y H+ Y IVP
Sbjct: 148 DMPLLLNFLDTVKNGGDVNIPVYSHEIYDIVP 179


>sp|Q09382|YS86_CAEEL Uncharacterized protein ZK945.6
           OS=Caenorhabditis elegans GN=ZK945.6 PE=2 SV=1
          Length = 216

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 250 SNHLVLISNLSKLIHRQT*CPAICPSVRIHYVLEKIDHY 134
           +N   +ISNL   I     C ++C +V +  V +K+D Y
Sbjct: 38  TNEADIISNLITAIEESLSCTSVCTAVSLETVAQKLDAY 76


>sp|P01087|IAAT_ELECO Alpha-amylase/trypsin inhibitor OS=Eleusine
           coracana PE=1 SV=2
          Length = 122

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 344 VRTKCLSSMMLAHKPQDNESWHPSTKPHRCGIA-RIVLSSFDA*C 475
           V T C+  M + H P D+  W+ ST+   CG+  R+      A C
Sbjct: 2   VGTSCIPGMAIPHNPLDSCRWYVSTR--TCGVGPRLATQEMKARC 44
tr_hit_id B5WU91
Definition tr|B5WU91|B5WU91_9BURK Transcriptional regulator, LysR family OS=Burkholderia sp. H160
Align length 40
Score (bit) 36.2
E-value 0.86
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912883|Adiantum capillus-veneris mRNA, clone:
YMU001_000023_H10.
         (494 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5WU91|B5WU91_9BURK Transcriptional regulator, LysR family OS...    36   0.86 
tr|Q141H4|Q141H4_BURXL Transcriptional regulator, LysR family OS...    34   4.3  
tr|B2T2W0|B2T2W0_BURPP Transcriptional regulator, LysR family OS...    33   5.6  
tr|B1F7P2|B1F7P2_9BURK Transcriptional regulator, LysR family OS...    33   5.6  
tr|A2WHA0|A2WHA0_9BURK Transcriptional regulator OS=Burkholderia...    33   5.6  
tr|Q38ZW7|Q38ZW7_BURS3 Transcriptional regulator, LysR family OS...    33   9.5  
tr|Q1BK58|Q1BK58_BURCA Transcriptional regulator, LysR family OS...    33   9.5  
tr|Q0B5L7|Q0B5L7_BURCM Transcriptional regulator, LysR family OS...    33   9.5  
tr|B4EG34|B4EG34_BURCJ LysR family regulatory protein OS=Burkhol...    33   9.5  
tr|B1YXS2|B1YXS2_BURA4 Transcriptional regulator, LysR family OS...    33   9.5  
tr|B1K9N4|B1K9N4_BURCC Transcriptional regulator, LysR family OS...    33   9.5  
tr|A9AR02|A9AR02_BURM1 Transcriptional regulator, LysR family (L...    33   9.5  
tr|A4JKD3|A4JKD3_BURVG Transcriptional regulator, LysR family OS...    33   9.5  
tr|A0B493|A0B493_BURCH Transcriptional regulator, LysR family OS...    33   9.5  
tr|B1SYJ7|B1SYJ7_9BURK Transcriptional regulator, LysR family OS...    33   9.5  
tr|B1G583|B1G583_9BURK Transcriptional regulator, LysR family OS...    33   9.5  
tr|A2W1Y3|A2W1Y3_9BURK Regulatory protein, LysR OS=Burkholderia ...    33   9.5  

>tr|B5WU91|B5WU91_9BURK Transcriptional regulator, LysR family
           OS=Burkholderia sp. H160 GN=BH160DRAFT_6644 PE=4 SV=1
          Length = 297

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -3

Query: 465 SKLDRTIRAIPHR*GFVDGCQDSLSWGLCASIMDDKHLVR 346
           ++LD  +  IPH  GF+  C  SL WG+C   M   HL R
Sbjct: 214 AELDPPLHWIPHVAGFLRACVMSLGWGMCPERMIAGHLAR 253


>tr|Q141H4|Q141H4_BURXL Transcriptional regulator, LysR family
           OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A1477
           PE=4 SV=1
          Length = 297

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 465 SKLDRTIRAIPHR*GFVDGCQDSLSWGLCASIMDDKHL 352
           ++LD  +  IPH  GF+  C   L WG+C   M   HL
Sbjct: 214 AELDPPLHWIPHVAGFLRACVTGLGWGMCPERMIAPHL 251


>tr|B2T2W0|B2T2W0_BURPP Transcriptional regulator, LysR family
           OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
           GN=Bphyt_1507 PE=4 SV=1
          Length = 297

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 459 LDRTIRAIPHR*GFVDGCQDSLSWGLCASIMDDKHL 352
           LD  +  IPH  GF+  C   L WG+C   M   HL
Sbjct: 216 LDPPLHWIPHVAGFLRACVTGLGWGMCPERMIASHL 251


>tr|B1F7P2|B1F7P2_9BURK Transcriptional regulator, LysR family
           OS=Burkholderia ambifaria IOP40-10
           GN=BamIOP4010DRAFT_0051 PE=4 SV=1
          Length = 297

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 459 LDRTIRAIPHR*GFVDGCQDSLSWGLCASIMDDKHL 352
           LD     IPH  G++  C+  L WG+C   M D+ L
Sbjct: 216 LDPPQHWIPHVAGYLRACETGLGWGMCPDRMTDRQL 251


>tr|A2WHA0|A2WHA0_9BURK Transcriptional regulator OS=Burkholderia
           dolosa AUO158 GN=BDAG_04179 PE=4 SV=1
          Length = 297

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 465 SKLDRTIRAIPHR*GFVDGCQDSLSWGLCASIMDDKHL 352
           ++LD     IPH  G++  C+  L WG+C   M D+ L
Sbjct: 214 AELDPPQHWIPHVAGYLRACETGLGWGMCPDRMVDRQL 251


>tr|Q38ZW7|Q38ZW7_BURS3 Transcriptional regulator, LysR family
           OS=Burkholderia sp. (strain 383) GN=Bcep18194_B3139 PE=4
           SV=1
          Length = 297

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 459 LDRTIRAIPHR*GFVDGCQDSLSWGLCASIMDDKHL 352
           LD     IPH  G++  C+  L WG+C   M D+ L
Sbjct: 216 LDPPQHWIPHVAGYLRACETGLGWGMCPDRMVDRQL 251


>tr|Q1BK58|Q1BK58_BURCA Transcriptional regulator, LysR family
           OS=Burkholderia cenocepacia (strain AU 1054)
           GN=Bcen_5123 PE=4 SV=1
          Length = 297

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 459 LDRTIRAIPHR*GFVDGCQDSLSWGLCASIMDDKHL 352
           LD     IPH  G++  C+  L WG+C   M D+ L
Sbjct: 216 LDPPQHWIPHVAGYLRACETGLGWGMCPDRMVDRQL 251


>tr|Q0B5L7|Q0B5L7_BURCM Transcriptional regulator, LysR family
           OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)
           GN=Bamb_5007 PE=4 SV=1
          Length = 297

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 459 LDRTIRAIPHR*GFVDGCQDSLSWGLCASIMDDKHL 352
           LD     IPH  G++  C+  L WG+C   M D+ L
Sbjct: 216 LDPPQHWIPHVAGYLRACETGLGWGMCPDRMVDRQL 251


>tr|B4EG34|B4EG34_BURCJ LysR family regulatory protein
           OS=Burkholderia cepacia (strain J2315 / LMG 16656)
           GN=BceJ2315_35180 PE=4 SV=1
          Length = 297

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 459 LDRTIRAIPHR*GFVDGCQDSLSWGLCASIMDDKHL 352
           LD     IPH  G++  C+  L WG+C   M D+ L
Sbjct: 216 LDPPQHWIPHVAGYLRACETGLGWGMCPDRMVDRQL 251


>tr|B1YXS2|B1YXS2_BURA4 Transcriptional regulator, LysR family
           OS=Burkholderia ambifaria (strain MC40-6)
           GN=BamMC406_3148 PE=4 SV=1
          Length = 297

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 459 LDRTIRAIPHR*GFVDGCQDSLSWGLCASIMDDKHL 352
           LD     IPH  G++  C+  L WG+C   M D+ L
Sbjct: 216 LDPPQHWIPHVAGYLRACETGLGWGMCPDRMVDRQL 251