BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912892|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_A08.
         (367 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5UQI0|YR830_MIMIV Putative BTB/POZ domain-containing protein...    34   0.26 
sp|O46669|SCNAA_CANFA Sodium channel protein type 10 subunit alp...    32   0.75 
sp|Q05590|CBIH_SALTY Cobalt-precorrin-3B C(17)-methyltransferase...    30   3.7  
sp|P22934|TNR1A_RAT Tumor necrosis factor receptor superfamily m...    29   6.4  
sp|Q8Y8G1|DPS_LISMO DNA protection during starvation protein OS=...    29   6.4  
sp|P80725|DPS_LISIN DNA protection during starvation protein OS=...    29   6.4  

>sp|Q5UQI0|YR830_MIMIV Putative BTB/POZ domain-containing protein
           R830 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R830
           PE=3 SV=1
          Length = 477

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 271 KSMQTCNLATQTLHYHKEHWSLNNHNHIHL 360
           K + TCNL+T+ L  HKE+ S+ + +H HL
Sbjct: 211 KKIYTCNLSTKILKEHKENISMTDFHHHHL 240


>sp|O46669|SCNAA_CANFA Sodium channel protein type 10 subunit alpha
            OS=Canis familiaris GN=SCN10A PE=2 SV=1
          Length = 1962

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -1

Query: 184  YTSDNVATPDPNGERESTRTDYTDYSCDTRKTCHAFCHDSRIDIITLWPSYEKQLTL 14
            +++DN+ATPD +GE  + +           +T  A C+      +  WP  E QL +
Sbjct: 902  FSADNLATPDEDGEVNNLQVALARIQAFGHRTKKAICNFFTRPCLLPWPKAEPQLVV 958


>sp|Q05590|CBIH_SALTY Cobalt-precorrin-3B C(17)-methyltransferase
           OS=Salmonella typhimurium GN=cbiH PE=1 SV=1
          Length = 241

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 85  HAFCHDSRIDIITLWPSYEKQL 20
           H FCH S  D++T WP  EK++
Sbjct: 125 HDFCHISLSDLLTPWPVIEKRI 146


>sp|P22934|TNR1A_RAT Tumor necrosis factor receptor superfamily
           member 1A OS=Rattus norvegicus GN=Tnfrsf1a PE=2 SV=2
          Length = 461

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 79  KHGTFCGCHMSSLYSLCECSPSLHSGQV*PHYHLCISPI 195
           K  T C CH     S  EC+P  H  +      LC+ P+
Sbjct: 161 KQNTVCNCHAGFFLSGNECTPCSHCKKNQECMKLCLPPV 199


>sp|Q8Y8G1|DPS_LISMO DNA protection during starvation protein
           OS=Listeria monocytogenes GN=dps PE=1 SV=1
          Length = 156

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 259 SIDTKSM---QTCNLATQTLHYHKEHWSLNNHNHIHLN 363
           S+DTK     Q  NL   T+  H+ HW +  HN   L+
Sbjct: 6   SVDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLH 43


>sp|P80725|DPS_LISIN DNA protection during starvation protein
           OS=Listeria innocua GN=dps PE=1 SV=1
          Length = 156

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 259 SIDTKSM---QTCNLATQTLHYHKEHWSLNNHNHIHLN 363
           S+DTK     Q  NL   T+  H+ HW +  HN   L+
Sbjct: 6   SVDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLH 43

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912892|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_A08.
         (367 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******