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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912894
Clone id YMU001_000024_A10
Library
Length 296
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATAAACTCTT
TTGTACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTCTTTGATGGTACCTT
GCTACTCGGATAACCGTATAATTCTAGAGCTAATACGTGCCAATCCCGATCTGGAAGGGA
CGCATTATAATAAAAGGCGATGCGGGCTTGCCCGGTAATGCGGTGAATATGATAACTCAA
CGAATCGCACGGCCTTGGCGCCGGCGATGCTTCATTCAAATTTCTGCCCTATCAAC
■■Homology search results ■■ -
sp_hit_id Q9PKW1
Definition sp|Q9PKW1|FOLD_CHLMU Bifunctional protein folD OS=Chlamydia muridarum
Align length 38
Score (bit) 32.3
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912894|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_A10.
         (296 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PKW1|FOLD_CHLMU Bifunctional protein folD OS=Chlamydia muri...    32   0.77 
sp|P56467|FOLD_HELPY Bifunctional protein folD OS=Helicobacter p...    32   1.0  
sp|Q1QVV9|FOLD_CHRSD Bifunctional protein folD OS=Chromohalobact...    32   1.0  
sp|Q6ASD8|DDL_DESPS D-alanine--D-alanine ligase OS=Desulfotalea ...    32   1.3  
sp|Q5H0Y0|MTNC_XANOR Enolase-phosphatase E1 OS=Xanthomonas oryza...    31   2.2  
sp|B2SM84|MTNC_XANOP Enolase-phosphatase E1 OS=Xanthomonas oryza...    31   2.2  
sp|Q2P3W6|MTNC_XANOM Enolase-phosphatase E1 OS=Xanthomonas oryza...    31   2.2  
sp|Q3BUE8|MTNC_XANC5 Enolase-phosphatase E1 OS=Xanthomonas campe...    30   2.9  
sp|Q8PLG2|MTNC_XANAC Enolase-phosphatase E1 OS=Xanthomonas axono...    30   2.9  
sp|Q9ZLQ4|FOLD_HELPJ Bifunctional protein folD OS=Helicobacter p...    30   3.8  
sp|Q1CTU9|FOLD_HELPH Bifunctional protein folD OS=Helicobacter p...    30   3.8  
sp|A4SNM0|FOLD_AERS4 Bifunctional protein folD OS=Aeromonas salm...    30   5.0  
sp|A0KJD4|FOLD_AERHH Bifunctional protein folD OS=Aeromonas hydr...    30   5.0  
sp|Q8P9N5|MTNC_XANCP Enolase-phosphatase E1 OS=Xanthomonas campe...    29   6.5  
sp|B0RSM3|MTNC_XANCB Enolase-phosphatase E1 OS=Xanthomonas campe...    29   6.5  
sp|Q4UU49|MTNC_XANC8 Enolase-phosphatase E1 OS=Xanthomonas campe...    29   6.5  
sp|B2FPP2|MTNC_STRMK Enolase-phosphatase E1 OS=Stenotrophomonas ...    29   6.5  
sp|A4W7J0|FOLD_ENT38 Bifunctional protein folD OS=Enterobacter s...    29   6.5  
sp|Q47IX6|FOLD_DECAR Bifunctional protein folD OS=Dechloromonas ...    29   6.5  
sp|B4STR0|MTNC_STRM5 Enolase-phosphatase E1 OS=Stenotrophomonas ...    29   8.5  
sp|Q2NV44|FOLD_SODGM Bifunctional protein folD OS=Sodalis glossi...    29   8.5  
sp|Q5F5D0|FOLD_NEIG1 Bifunctional protein folD OS=Neisseria gono...    29   8.5  

>sp|Q9PKW1|FOLD_CHLMU Bifunctional protein folD OS=Chlamydia
           muridarum GN=folD PE=3 SV=1
          Length = 287

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 72  NCEWLIKSVIVSLMVPCYSDNRIILELIRANPDLEGTH 185
           NC+  I  V+V L +P + D + IL  I  N D++G H
Sbjct: 80  NCDENIHGVLVQLPLPKHLDTQTILSSISPNKDVDGLH 117


>sp|P56467|FOLD_HELPY Bifunctional protein folD OS=Helicobacter
           pylori GN=folD PE=3 SV=2
          Length = 290

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 72  NCEWLIKSVIVSLMVPCYSDNRIILELIRANPDLEGTH 185
           N +  I  V+V L +P + D ++ILE I  N D++G H
Sbjct: 90  NTDQNISGVLVQLPLPRHIDTKMILEAIDPNKDVDGFH 127


>sp|Q1QVV9|FOLD_CHRSD Bifunctional protein folD OS=Chromohalobacter
           salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB
           13768) GN=folD PE=3 SV=1
          Length = 287

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 72  NCEWLIKSVIVSLMVPCYSDNRIILELIRANPDLEGTH-YNKRR 200
           N +  I  ++V L +P + D R ILE IR + D++G H YN  R
Sbjct: 87  NADCSIDGILVQLPLPDHLDARPILERIRPDKDVDGFHPYNLGR 130


>sp|Q6ASD8|DDL_DESPS D-alanine--D-alanine ligase OS=Desulfotalea
           psychrophila GN=ddl PE=3 SV=1
          Length = 322

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 195 FYYNASLPDRDWHVLALELYGYPSSKVPSKKL*LI 91
           FYYNA LP  DWH +A   + Y    +    L L+
Sbjct: 110 FYYNAELPVADWHTIAAGDFFYSEELIEDLGLPLV 144


>sp|Q5H0Y0|MTNC_XANOR Enolase-phosphatase E1 OS=Xanthomonas oryzae
           pv. oryzae GN=mtnC PE=3 SV=1
          Length = 232

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 192 YYNASLPDRDWHVLALELYGYPSSKVPSKKL 100
           Y +A+L  + WH   + LY Y S  VP++KL
Sbjct: 105 YADAALQLQAWHAAGIPLYVYSSGSVPAQKL 135


>sp|B2SM84|MTNC_XANOP Enolase-phosphatase E1 OS=Xanthomonas oryzae
           pv. oryzae (strain PXO99A) GN=mtnC1 PE=3 SV=1
          Length = 232

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 192 YYNASLPDRDWHVLALELYGYPSSKVPSKKL 100
           Y +A+L  + WH   + LY Y S  VP++KL
Sbjct: 105 YADAALQLQAWHAAGIPLYVYSSGSVPAQKL 135


>sp|Q2P3W6|MTNC_XANOM Enolase-phosphatase E1 OS=Xanthomonas oryzae
           pv. oryzae (strain MAFF 311018) GN=mtnC PE=3 SV=1
          Length = 232

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 192 YYNASLPDRDWHVLALELYGYPSSKVPSKKL 100
           Y +A+L  + WH   + LY Y S  VP++KL
Sbjct: 105 YADAALQLQAWHAAGIPLYVYSSGSVPAQKL 135


>sp|Q3BUE8|MTNC_XANC5 Enolase-phosphatase E1 OS=Xanthomonas
           campestris pv. vesicatoria (strain 85-10) GN=mtnC PE=3
           SV=1
          Length = 232

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 192 YYNASLPDRDWHVLALELYGYPSSKVPSKKL 100
           Y +A++  + WH   + LY Y S  VP++KL
Sbjct: 105 YADAAIQLKAWHAAGIPLYVYSSGSVPAQKL 135


>sp|Q8PLG2|MTNC_XANAC Enolase-phosphatase E1 OS=Xanthomonas
           axonopodis pv. citri GN=mtnC PE=3 SV=1
          Length = 232

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 192 YYNASLPDRDWHVLALELYGYPSSKVPSKKL 100
           Y +A++  + WH   + LY Y S  VP++KL
Sbjct: 105 YADAAIQLKAWHAAGIPLYVYSSGSVPAQKL 135


>sp|Q9ZLQ4|FOLD_HELPJ Bifunctional protein folD OS=Helicobacter
           pylori J99 GN=folD PE=3 SV=1
          Length = 290

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 72  NCEWLIKSVIVSLMVPCYSDNRIILELIRANPDLEGTH 185
           N +  I  ++V L +P   D ++ILE I  N D++G H
Sbjct: 90  NTDQNISGILVQLPLPRSIDTKMILEAIDPNKDVDGFH 127
tr_hit_id A6MZI2
Definition tr|A6MZI2|A6MZI2_ORYSI Putative uncharacterized protein (Fragment) OS=Oryza sativa subsp. indica
Align length 26
Score (bit) 52.0
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912894|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_A10.
         (296 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6MZI2|A6MZI2_ORYSI Putative uncharacterized protein (Fragmen...    52   1e-05
tr|B8A8W0|B8A8W0_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.009
tr|B6PF04|B6PF04_BRAFL Putative uncharacterized protein OS=Branc...    40   0.058
tr|B6M386|B6M386_BRAFL Putative uncharacterized protein OS=Branc...    40   0.058
tr|Q6Z8F1|Q6Z8F1_ORYSJ Putative uncharacterized protein P0459B01...    38   0.29 
tr|Q00Y69|Q00Y69_OSTTA Chromosome 12 contig 1, DNA sequence. (Fr...    36   0.83 
tr|Q28BV9|Q28BV9_XENTR Novel sal-like protein OS=Xenopus tropica...    28   1.5  
tr|Q7RAM2|Q7RAM2_PLAYO Putative uncharacterized protein PY06477 ...    33   1.9  

>tr|A6MZI2|A6MZI2_ORYSI Putative uncharacterized protein
          (Fragment) OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 26

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +2

Query: 11 HMLVSKIKPCMCKYKLFCTVKLRMAH 88
          HMLVSKIKPCMCKY+L  TVKLRMAH
Sbjct: 1  HMLVSKIKPCMCKYELIRTVKLRMAH 26


>tr|B8A8W0|B8A8W0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02128 PE=4 SV=1
          Length = 67

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +3

Query: 228 YDNSTNRTALAPAMLHSNFCPIN 296
           +DNST+RTAL PA  HSNFCPIN
Sbjct: 3   HDNSTDRTALVPATHHSNFCPIN 25


>tr|B6PF04|B6PF04_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_106173 PE=4 SV=1
          Length = 220

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 2   ASSHMLVSKIKPCMCKYKL 58
           ASSHMLVSKIKPC CK+KL
Sbjct: 200 ASSHMLVSKIKPCTCKFKL 218


>tr|B6M386|B6M386_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_77678 PE=4 SV=1
          Length = 191

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 2   ASSHMLVSKIKPCMCKYKL 58
           ASSHMLVSKIKPC CK+KL
Sbjct: 171 ASSHMLVSKIKPCTCKFKL 189


>tr|Q6Z8F1|Q6Z8F1_ORYSJ Putative uncharacterized protein P0459B01.16
           OS=Oryza sativa subsp. japonica GN=P0459B01.16 PE=4 SV=1
          Length = 172

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +3

Query: 3   PVVICLSQRLSHACVSIN 56
           PVVICLSQRLSHAC S+N
Sbjct: 155 PVVICLSQRLSHACASMN 172


>tr|Q00Y69|Q00Y69_OSTTA Chromosome 12 contig 1, DNA sequence.
           (Fragment) OS=Ostreococcus tauri GN=Ot12g00910 PE=4 SV=1
          Length = 279

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 20/38 (52%), Positives = 21/38 (55%)
 Frame = -2

Query: 115 TIKETITDLMSHSQFHSTKEFILTHAWLNL*DKHMTTG 2
           T KETI DLMSHSQFH               +KHMTTG
Sbjct: 31  TTKETIADLMSHSQFH---------------NKHMTTG 53


>tr|Q28BV9|Q28BV9_XENTR Novel sal-like protein OS=Xenopus tropicalis
           GN=dnaja3 PE=2 SV=1
          Length = 842

 Score = 28.1 bits (61), Expect(2) = 1.5
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +1

Query: 64  YCETANGSLNQL*FL 108
           Y ETANGSLNQL FL
Sbjct: 828 YSETANGSLNQLWFL 842



 Score = 26.2 bits (56), Expect(2) = 1.5
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 12  ICLSQRLSHACVS 50
           ICLSQRLSHA VS
Sbjct: 811 ICLSQRLSHARVS 823


>tr|Q7RAM2|Q7RAM2_PLAYO Putative uncharacterized protein PY06477
          OS=Plasmodium yoelii yoelii GN=PY06477 PE=4 SV=1
          Length = 58

 Score = 33.1 bits (74), Expect(2) = 1.9
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +3

Query: 3  PVVICLSQRLSHACVSINSFVL 68
          PVVICLSQRLSHA  SI + ++
Sbjct: 27 PVVICLSQRLSHASESIYTIIV 48



 Score = 21.2 bits (43), Expect(2) = 1.9
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 70 ETANGSLNQL 99
          ETANGSL QL
Sbjct: 49 ETANGSLKQL 58