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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912896
Clone id YMU001_000024_A12
Library
Length 443
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAACAATCTACTACGACATGAGGATCGGCAAGCAGAAACAAATGGACCTAGAGACATCAT
CAGATGAAACCACTAGTGAGTCTTCCAATTCTTGGGAAGAGACCACCTCCACCAATGAGA
GTGACAATTCCATCGATGTGATGGGCATTACCATGAAGGATCTACAAAGGGCAAGCACGA
CTGGCGACCCATCACACAAAGTCAAAGCAATAGAGAGGAAAATAAATTACCTAGCCTAGG
AGAGGGTAGGTTGAAGAGTATGTTGTCTATGGAATTACAAGTGAAGAGAAGGATAAATCT
TTGCGAATGCTGATGGGATTTCCTGACCTTTTCATTGGCAACTATGAAAGAATCACAGGT
ATTATAGTAGTGGAGCATCATATTAAGCTGAAGGAAGGGGTAAAACCAGTGGTTCAAAAA
CTACGATGGCTAAGGGTCATACA
■■Homology search results ■■ -
sp_hit_id Q8VDX6
Definition sp|Q8VDX6|TMEM5_MOUSE Transmembrane protein 5 OS=Mus musculus
Align length 55
Score (bit) 28.9
E-value 10.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912896|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_A12.
         (443 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VDX6|TMEM5_MOUSE Transmembrane protein 5 OS=Mus musculus GN...    29   10.0 
sp|Q00963|SPTCB_DROME Spectrin beta chain OS=Drosophila melanoga...    29   10.0 

>sp|Q8VDX6|TMEM5_MOUSE Transmembrane protein 5 OS=Mus musculus
           GN=Tmem5 PE=2 SV=1
          Length = 444

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 271 GITSEEKDKSLRML--MGFPDLFIGNYERITGIIVVEHHIKLKEGVKPVVQKLRW 429
           G T+ +    L++L  MG P +FI N++ +  I+  E  I L+E ++     L W
Sbjct: 364 GNTTSQHSAPLQLLKAMGAPFIFIKNWKELPAILEKEKTISLQEKIQRRKVLLHW 418


>sp|Q00963|SPTCB_DROME Spectrin beta chain OS=Drosophila melanogaster
            GN=beta-Spec PE=1 SV=2
          Length = 2291

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 143  GHYHEGSTKGKHDWRPITQSQSNREENKL 229
            G  HEG    KH+W   T+  SNR  +K+
Sbjct: 2147 GEGHEGYVTRKHEWDSTTKKASNRSWDKV 2175
tr_hit_id A5CAN4
Definition tr|A5CAN4|A5CAN4_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 55
Score (bit) 46.6
E-value 0.0006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912896|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_A12.
         (443 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5CAN4|A5CAN4_VITVI Putative uncharacterized protein OS=Vitis...    47   6e-04
tr|A5BKG7|A5BKG7_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A5B3D7|A5B3D7_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A5AGD8|A5AGD8_VITVI Putative uncharacterized protein OS=Vitis...    42   0.012
tr|A2Q2J0|A2Q2J0_MEDTR RNA-directed DNA polymerase (Reverse tran...    42   0.015
tr|A5B8Z6|A5B8Z6_VITVI Putative uncharacterized protein OS=Vitis...    42   0.020
tr|A5BEH9|A5BEH9_VITVI Putative uncharacterized protein OS=Vitis...    41   0.034
tr|A5BDL7|A5BDL7_VITVI Putative uncharacterized protein OS=Vitis...    41   0.034
tr|A5BD78|A5BD78_VITVI Putative uncharacterized protein OS=Vitis...    41   0.034
tr|A5BCX9|A5BCX9_VITVI Putative uncharacterized protein OS=Vitis...    40   0.057
tr|A5B385|A5B385_VITVI Putative uncharacterized protein OS=Vitis...    40   0.057
tr|A5BE25|A5BE25_VITVI Putative uncharacterized protein OS=Vitis...    40   0.075
tr|A5BA29|A5BA29_VITVI Putative uncharacterized protein OS=Vitis...    40   0.075
tr|A5B5U8|A5B5U8_VITVI Putative uncharacterized protein OS=Vitis...    40   0.075
tr|A5B1B7|A5B1B7_VITVI Putative uncharacterized protein OS=Vitis...    40   0.075
tr|A5AW80|A5AW80_VITVI Putative uncharacterized protein OS=Vitis...    40   0.075
tr|A5AQR2|A5AQR2_VITVI Putative uncharacterized protein OS=Vitis...    40   0.075
tr|A5ALU1|A5ALU1_VITVI Putative uncharacterized protein OS=Vitis...    40   0.075
tr|A5AEG5|A5AEG5_VITVI Putative uncharacterized protein OS=Vitis...    40   0.075
tr|A5C7S3|A5C7S3_VITVI Putative uncharacterized protein OS=Vitis...    39   0.098
tr|A5BPS7|A5BPS7_VITVI Putative uncharacterized protein OS=Vitis...    39   0.098
tr|A5BFL8|A5BFL8_VITVI Putative uncharacterized protein OS=Vitis...    39   0.098
tr|A5BZW6|A5BZW6_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A5BSJ3|A5BSJ3_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A5B146|A5B146_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A5AIB7|A5AIB7_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A5ADF2|A5ADF2_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A5BV39|A5BV39_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|A5BSV0|A5BSV0_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|A5BRI1|A5BRI1_VITVI Putative uncharacterized protein (Fragmen...    39   0.17 

>tr|A5CAN4|A5CAN4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036822 PE=4 SV=1
          Length = 323

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 21/55 (38%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
 Frame = +1

Query: 274 ITSEEKDKSLRMLMGFPDLFIGNYERITG--IIVVEHHIKLKEGVKPVVQKLRWL 432
           ++++E+D+ + +LM + D+F  +YE ++G  + +V+HH+ +   VKPV QKLR L
Sbjct: 164 LSTDERDRLIHLLMSYLDVFAWSYEDMSGLNLSIVQHHLPILPHVKPVKQKLRRL 218


>tr|A5BKG7|A5BKG7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_032854 PE=4 SV=1
          Length = 2089

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
 Frame = +1

Query: 274  ITSEEKDKSLRMLMGFPDLFIGNYERITGI--IVVEHHIKLKEGVKPVVQKLRWL 432
            +++EE+D+ + +L  + D+F  +YE + G+   +V+HH+ +   V+PV QKLR L
Sbjct: 1184 LSTEERDRLIHLLXSYLDVFAWSYEDMPGLDPSIVQHHLPILPHVRPVKQKLRRL 1238


>tr|A5B3D7|A5B3D7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_000572 PE=4 SV=1
          Length = 2022

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
 Frame = +1

Query: 274  ITSEEKDKSLRMLMGFPDLFIGNYERITGI--IVVEHHIKLKEGVKPVVQKLRWL 432
            +++EE+D+ + +L  + D+F  +YE + G+   +V+HH+ +   V+PV QKLR L
Sbjct: 1021 LSTEERDRLIHLLRSYLDVFAWSYEDMPGLDPSIVQHHLPILPHVRPVKQKLRRL 1075


>tr|A5AGD8|A5AGD8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_006362 PE=4 SV=1
          Length = 2154

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 19/55 (34%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
 Frame = +1

Query: 274  ITSEEKDKSLRMLMGFPDLFIGNYERITGI--IVVEHHIKLKEGVKPVVQKLRWL 432
            ++++E+D+ + +L  + D+F  +YE + G+   +V+HH+ +   V+PV QKLR L
Sbjct: 1134 LSTDERDRLIHLLRSYLDVFAWSYEDMPGLDPSIVQHHLPILPHVRPVKQKLRRL 1188


>tr|A2Q2J0|A2Q2J0_MEDTR RNA-directed DNA polymerase (Reverse
           transcriptase); Ribonuclease H OS=Medicago truncatula
           GN=MtrDRAFT_AC150891g48v2 PE=4 SV=1
          Length = 1146

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
 Frame = +1

Query: 271 GITSEE--KDKSLRMLMGFPDLFIGNYERITGI--IVVEHHIKLKEGVKPVVQKLR 426
           G T EE  K K +++L  +PD+F  +YE + G+  ++VEH I  K    PV QKLR
Sbjct: 81  GATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPDCPPVRQKLR 136


>tr|A5B8Z6|A5B8Z6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040221 PE=4 SV=1
          Length = 1339

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
 Frame = +1

Query: 274 ITSEEKDKSLRMLMGFPDLFIGNYERITGI--IVVEHHIKLKEGVKPVVQKLRWL 432
           ++++E+D+ + +L  + D+F  +YE + G+   +V+HH+ +    +PV QKLR L
Sbjct: 612 LSTDERDRLIHLLRSYSDVFSWSYEDMPGLDRSIVQHHLPILSHARPVKQKLRRL 666


>tr|A5BEH9|A5BEH9_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_001618 PE=4 SV=1
          Length = 1553

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
 Frame = +1

Query: 286  EKDKSLRMLMGFPDLFIGNYERITGI--IVVEHHIKLKEGVKPVVQKLRWL 432
            E+D  +++L  + D+F  +YE + G+   +V+HH+ L   V+PV QKLR L
Sbjct: 954  ERDSLIQLLRAYLDVFAWSYEDMPGLDPSIVQHHLPLLSHVRPVKQKLRRL 1004


>tr|A5BDL7|A5BDL7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012606 PE=4 SV=1
          Length = 1195

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = +1

Query: 274 ITSEEKDKSLRMLMGFPDLFIGNYERITGI--IVVEHHIKLKEGVKPVVQKLRWL 432
           +++EE+D+ + +L  + D+F  +YE + G+   +V+HH+      +PV QKLR L
Sbjct: 172 LSTEERDRLIHLLRSYLDVFAWSYEDMPGLDPSIVQHHLPTLPHARPVKQKLRRL 226


>tr|A5BD78|A5BD78_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_037609 PE=4 SV=1
          Length = 1731

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
 Frame = +1

Query: 274  ITSEEKDKSLRMLMGFPDLFIGNYERITGI--IVVEHHIKLKEGVKPVVQKLRWL 432
            ++++E+D+ + +L  + D+F  +YE + G+   +V+HH+ +    +PV QKLR L
Sbjct: 858  LSTDERDRLIHLLRSYLDVFAWSYEDMPGLDPSIVQHHLPILPHARPVKQKLRRL 912


>tr|A5BCX9|A5BCX9_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_016131 PE=4 SV=1
          Length = 1755

 Score = 40.0 bits (92), Expect = 0.057
 Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = +1

Query: 274  ITSEEKDKSLRMLMGFPDLFIGNYERITGI--IVVEHHIKLKEGVKPVVQKLRWL 432
            ++++E+D+ + +L  + D+F  +YE + G+   +V+HH  +    +PV QKLR L
Sbjct: 944  LSTDERDRLIHLLRSYLDVFAWSYEDMPGLDPSIVQHHFPILPHARPVKQKLRRL 998