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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912900
Clone id YMU001_000024_B04
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTCCTGTGGTGATTCTGTTTGTGTTAACGAGGCAGATTTCGTTTCCTGCCCTTTCTTCCT
TAGTTCCAGAGTTTTTTTCCCAGAAGTCTGGTATTGCTTAGCTTCTTTTGCCTGCTTCAC
GTCCCGTCAAGCACTTGCACATGGTCTTCGCTGCTAGCATTTGGAAACGTTTTTTCTTGC
ATGTTTTCAAATTTCAGCCATGTTTTCCCAGAAGTCTTGTCTTACTTAGTTCCTCTGCAT
GCTTCGCGTCTTGTCAGCTTCCTGTTAAGTAAATGGCCTATTTTGTGCTGCCTATATACG
TAGATGCCTTGTCTGGTTTCTAATTTCAGCCATGCTCGTTTCCCCTTCGGGCTATTCTCT
TTGAGACTAGCGTGTGGTGCACTCATGTGTGTGGTCTCTCTGTGAACAATTGAGCAAATT
TTTCTCCTTCATTTGTATAGGCTTTCAAGTGTGCCATTCACTTGGTGGAGGTACTGGGTC
TGGAATGGGGACACTTTTAATT
■■Homology search results ■■ -
sp_hit_id Q9QYE6
Definition sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus
Align length 42
Score (bit) 30.8
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912900|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_B04.
         (502 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculu...    31   3.7  
sp|P45385|IGA3_HAEIN Immunoglobulin A1 protease OS=Haemophilus i...    30   6.4  
sp|P42782|IGA1_HAEIN Immunoglobulin A1 protease OS=Haemophilus i...    30   6.4  
sp|Q37711|NU4M_ARTSF NADH-ubiquinone oxidoreductase chain 4 OS=A...    30   8.3  

>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus
           GN=Golga5 PE=1 SV=2
          Length = 729

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -3

Query: 188 ENMQEKTFPNASSEDHVQVLDGT*SRQKKLSNTRLLGKKLWN 63
           E  +E T P+A+SE+H        SR ++LSN RL  + L N
Sbjct: 193 EPSEESTAPSATSEEHSSTPSDGSSRSQELSNLRLENQLLRN 234


>sp|P45385|IGA3_HAEIN Immunoglobulin A1 protease OS=Haemophilus
            influenzae GN=iga PE=3 SV=1
          Length = 1545

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = -2

Query: 207  ENMAEI*KHARKNVSKC*QRRPCASA*RDVKQAKEAKQYQTSGKKTLELRKKGQETKSAS 28
            E +AE  K   K V K  Q     +A ++ + AKEAK    +  +T E+ + G ETK   
Sbjct: 1042 ETVAENSKQESKTVEKNEQDATETTA-QNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1100

Query: 27   LTQTE 13
             T+T+
Sbjct: 1101 TTETK 1105


>sp|P42782|IGA1_HAEIN Immunoglobulin A1 protease OS=Haemophilus
            influenzae GN=iga PE=1 SV=1
          Length = 1541

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = -2

Query: 207  ENMAEI*KHARKNVSKC*QRRPCASA*RDVKQAKEAKQYQTSGKKTLELRKKGQETKSAS 28
            E +AE  K   K V K  Q     +A ++ + AKEAK    +  +T E+ + G ETK   
Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTA-QNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096

Query: 27   LTQTE 13
             T+T+
Sbjct: 1097 TTETK 1101


>sp|Q37711|NU4M_ARTSF NADH-ubiquinone oxidoreductase chain 4
           OS=Artemia sanfranciscana GN=ND4 PE=3 SV=1
          Length = 386

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
 Frame = +1

Query: 112 LLHVPSSTCTWSSLLAFGNVFSCMFSNFSHVFPEVLSYLVPLHASRLVSFLLSKWPILCC 291
           +L++ S T T   +   G +FSC+          +++Y    H S ++  +L     + C
Sbjct: 186 VLNIYSET-TLMGVCLMGGIFSCLICLRQSDVKSLIAYSSVAHMSFVILGML-----MSC 239

Query: 292 LYT*MPCLVSNFSHARFPFGLFSLRLACGALMCVVSL*TIEQIFLLHLYRLSSVPFT--W 465
            YT M  ++   SH     GLF L     A +         + FLL    +S  P+   W
Sbjct: 240 TYTNMSSILMMVSHGICSSGLFYLSYLFYARIW-------SRSFLLTRSMISLFPYLCFW 292

Query: 466 W 468
           W
Sbjct: 293 W 293
tr_hit_id Q2MHL0
Definition tr|Q2MHL0|Q2MHL0_DANRE Taste receptor, type 1, member 2b (Fragment) OS=Danio rerio
Align length 53
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912900|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_B04.
         (502 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2MHL0|Q2MHL0_DANRE Taste receptor, type 1, member 2b (Fragme...    35   1.5  
tr|A4PHQ8|A4PHQ8_DANRE Taste receptor type 1 member 2b OS=Danio ...    35   1.5  
tr|B5R6P7|B5R6P7_SALG2 Exonuclease SbcC OS=Salmonella gallinarum...    33   9.7  
tr|B4TZG8|B4TZG8_SALSV Exonuclease SbcC OS=Salmonella schwarzeng...    33   9.7  
tr|B5CF16|B5CF16_SALET Putative RecF/RecN/SMC N domain protein O...    33   9.7  

>tr|Q2MHL0|Q2MHL0_DANRE Taste receptor, type 1, member 2b (Fragment)
           OS=Danio rerio GN=tas1r2.2 PE=2 SV=1
          Length = 373

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = +1

Query: 142 WSSLLAFGNVFSCMFSNFSHVFPEVLSYLVPLHASRLVSFLLSKWPILCCLYT 300
           +S LLAF NV SC+ S FS     +L  L P+H  +  + L +   I C  YT
Sbjct: 5   YSLLLAFINVVSCLESEFSLKGDYLLGGLFPIHEGKPATHLFTPEAIECFRYT 57


>tr|A4PHQ8|A4PHQ8_DANRE Taste receptor type 1 member 2b OS=Danio
           rerio GN=tas1r2.2 PE=2 SV=1
          Length = 823

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = +1

Query: 142 WSSLLAFGNVFSCMFSNFSHVFPEVLSYLVPLHASRLVSFLLSKWPILCCLYT 300
           +S LLAF NV SC+ S FS     +L  L P+H  +  + L +   I C  YT
Sbjct: 5   YSFLLAFINVVSCLESEFSLKGDYLLGGLFPIHEGKPATHLFTPEAIECFRYT 57


>tr|B5R6P7|B5R6P7_SALG2 Exonuclease SbcC OS=Salmonella gallinarum
           (strain 287/91 / NCTC 13346) GN=sbcC PE=4 SV=1
          Length = 1046

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -3

Query: 476 QYLHQVNGTLESLYK*RRKICSIVHRETTHMSAPHASLKENSPKGKRAWLKLETRQGIYV 297
           Q+  +VN  L+S Y+ RR+I +  HR+ T ++A    LK         W  L    GI +
Sbjct: 311 QHSDEVNARLQSAYRLRRRIRACAHRQFTQLNATGQRLK--------TW--LAEHDGIRI 360

Query: 296 YRQHKIG 276
           +R    G
Sbjct: 361 WRSELAG 367


>tr|B4TZG8|B4TZG8_SALSV Exonuclease SbcC OS=Salmonella
           schwarzengrund (strain CVM19633) GN=SeSA_A0451 PE=4 SV=1
          Length = 1046

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -3

Query: 476 QYLHQVNGTLESLYK*RRKICSIVHRETTHMSAPHASLKENSPKGKRAWLKLETRQGIYV 297
           Q+  +VN  L+S Y+ R++I S  HR+ T ++A    LK         W  L    GI V
Sbjct: 311 QHSDEVNARLQSAYRLRQRIRSCAHRQFTQLNATGQRLK--------TW--LAEHDGIRV 360

Query: 296 YRQHKIG 276
           +R    G
Sbjct: 361 WRSELAG 367


>tr|B5CF16|B5CF16_SALET Putative RecF/RecN/SMC N domain protein
           OS=Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480 GN=SeSB_A0638 PE=4 SV=1
          Length = 1046

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -3

Query: 476 QYLHQVNGTLESLYK*RRKICSIVHRETTHMSAPHASLKENSPKGKRAWLKLETRQGIYV 297
           Q+  +VN  L+S Y+ R++I S  HR+ T ++A    LK         W  L    GI V
Sbjct: 311 QHSDEVNARLQSAYRLRQRIRSCAHRQFTQLNATGQRLK--------TW--LAEHDGIRV 360

Query: 296 YRQHKIG 276
           +R    G
Sbjct: 361 WRSELAG 367