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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912904
Clone id YMU001_000024_B09
Library
Length 528
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGCATAAAGCTCACAAAGTCAACTGCTTTCATAACTGGGCCAAAGGGTTATTATATCAAT
CCGTGAATCGTGGCAGAAAGCATGGCACGTTTTGCGGGTGTCACATGAGTAGTCTGTATA
GTCTGTGCGAGTGCTCTCCCTCTCTCCATTCGGGTCAGGTGTAGCCACATTATCACTTGT
GTATTAGCCCAATCCCTCAGAGAATAATAATCAGCCTTGATTACGCTAGCAAAACAGACA
GTAAATAGTAAACCATCTCAATAGACACTAAGTCTATGCAGACATGCAATTTGGCTACTC
AAACCTTGCACTATCACAAAGAACACTGGTCACTAAACAATCACAATCACATTCACCTCA
ATTTCCCTGCCAAAATCTCAGAAAAGAATCGTAATCATTATATCTTATTCAGCCATCACA
TCTAGATCTCAATGATCTATATCAGTTGTCTTGATGCATAAATCTGATCAGTTCAACATC
GCATCACCTTAACGTTTAAATCGAGATTAGATGGTACAGACATTTCAT
■■Homology search results ■■ -
sp_hit_id Q5UQI0
Definition sp|Q5UQI0|YR830_MIMIV Putative BTB/POZ domain-containing protein R830 OS=Acanthamoeba polyphaga mimivirus
Align length 30
Score (bit) 33.9
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912904|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_B09.
         (528 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5UQI0|YR830_MIMIV Putative BTB/POZ domain-containing protein...    34   0.49 
sp|Q9UUD6|UBP11_SCHPO Ubiquitin carboxyl-terminal hydrolase 11 O...    30   9.2  

>sp|Q5UQI0|YR830_MIMIV Putative BTB/POZ domain-containing protein
           R830 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R830
           PE=3 SV=1
          Length = 477

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 270 KSMQTCNLATQTLHYHKEHWSLNNHNHIHL 359
           K + TCNL+T+ L  HKE+ S+ + +H HL
Sbjct: 211 KKIYTCNLSTKILKEHKENISMTDFHHHHL 240


>sp|Q9UUD6|UBP11_SCHPO Ubiquitin carboxyl-terminal hydrolase 11
           OS=Schizosaccharomyces pombe GN=ubp11 PE=2 SV=1
          Length = 350

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = +3

Query: 345 NHIHLNFPAKISEKNRNHYIL 407
           N++ ++FP+K+  KN++HYIL
Sbjct: 268 NNVSISFPSKLILKNKHHYIL 288
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912904|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_B09.
         (528 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******