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NBDC - LSDB Archive
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BP912912
Clone id YMU001_000024_C05
Library
Length 413
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCCCCACTTGCAGTGGCTGGATTGGCACTGGGGGGCGCAGATGCTGCTACCTCAGCAGGT
GGGGATGTGGCAAGGCTGAGCATTCTTCACATGAAGACCTGTCAAATTAAGGAGAGGTTC
AAGACCTTTGGGCAAGAAACTGAAGGTCTGTTAAGTATACTGCTGGAGATGCGGCAGCTC
ATGAGTGAGCTTTCAGTTATGTGTCAGCGAAACAATTTGAGTAAAGTTGAGACAAGCGTC
ATAGAGATTCTTCTAAGAAGTGGCAGGAGTGCAGTGAATTTGACAAACTCAGGAGTAGAT
GTGTATAGAGTTGCGACGATTGTGTATGATATCACTCGGCTGCAGAAGAGTGGTGTCATC
TTAGGAGCTGATTACCTTAAACTCGTGGGGGGAACTATGACTGGATCTGGTCT
■■Homology search results ■■ -
sp_hit_id P98167
Definition sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus
Align length 38
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912912|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_C05.
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus GN=SSPO PE=2 SV=2       34   0.20 
sp|Q54WB6|PSMG1_DICDI Proteasome assembly chaperone 1 OS=Dictyos...    31   2.2  
sp|Q9I4S5|PDXH_PSEAE Pyridoxine/pyridoxamine 5'-phosphate oxidas...    30   2.9  
sp|Q02IL5|PDXH_PSEAB Pyridoxine/pyridoxamine 5'-phosphate oxidas...    30   2.9  
sp|A6V9E9|PDXH_PSEA7 Pyridoxine/pyridoxamine 5'-phosphate oxidas...    30   2.9  
sp|Q5Z236|PDXH_NOCFA Pyridoxine/pyridoxamine 5'-phosphate oxidas...    30   3.8  
sp|A8MXZ3|KR923_HUMAN Putative keratin-associated protein 9-2-li...    30   3.8  
sp|Q3KGY4|PDXH_PSEPF Pyridoxine/pyridoxamine 5'-phosphate oxidas...    30   4.9  
sp|Q8CNE0|MOAC_STAES Molybdenum cofactor biosynthesis protein C ...    30   4.9  
sp|Q5HLX5|MOAC_STAEQ Molybdenum cofactor biosynthesis protein C ...    30   4.9  
sp|A4VJR0|PDXH_PSEU5 Pyridoxine/pyridoxamine 5'-phosphate oxidas...    29   6.5  
sp|Q4ZPN9|PDXH_PSEU2 Pyridoxine/pyridoxamine 5'-phosphate oxidas...    29   6.5  
sp|Q87XR0|PDXH_PSESM Pyridoxine/pyridoxamine 5'-phosphate oxidas...    29   6.5  
sp|Q88NS5|PDXH_PSEPK Pyridoxine/pyridoxamine 5'-phosphate oxidas...    29   6.5  
sp|B0KUA9|PDXH_PSEPG Pyridoxine/pyridoxamine 5'-phosphate oxidas...    29   6.5  
sp|A5VZL6|PDXH_PSEP1 Pyridoxine/pyridoxamine 5'-phosphate oxidas...    29   6.5  
sp|A4XS85|PDXH_PSEMY Pyridoxine/pyridoxamine 5'-phosphate oxidas...    29   6.5  
sp|Q4KH71|PDXH_PSEF5 Pyridoxine/pyridoxamine 5'-phosphate oxidas...    29   6.5  
sp|Q1IDT9|PDXH_PSEE4 Pyridoxine/pyridoxamine 5'-phosphate oxidas...    29   6.5  
sp|Q48LQ7|PDXH_PSE14 Pyridoxine/pyridoxamine 5'-phosphate oxidas...    29   6.5  
sp|Q8Y1C3|PDXH1_RALSO Pyridoxine/pyridoxamine 5'-phosphate oxida...    29   6.5  
sp|Q9BYQ2|KRA94_HUMAN Keratin-associated protein 9-4 OS=Homo sap...    29   6.5  
sp|Q8XGX8|DCOA_SALTI Oxaloacetate decarboxylase alpha chain OS=S...    29   6.5  
sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2...    29   8.4  
sp|B0BU37|PDXH_ACTPJ Pyridoxine/pyridoxamine 5'-phosphate oxidas...    29   8.4  
sp|A3N3U7|PDXH_ACTP2 Pyridoxine/pyridoxamine 5'-phosphate oxidas...    29   8.4  
sp|Q31E41|PDXH2_THICR Pyridoxine/pyridoxamine 5'-phosphate oxida...    29   8.4  
sp|Q8UEM4|NRDJ_AGRT5 Vitamin B12-dependent ribonucleotide reduct...    29   8.4  
sp|P00562|AK2H_ECOLI Bifunctional aspartokinase/homoserine dehyd...    29   8.4  

>sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus GN=SSPO PE=2 SV=2
          Length = 5146

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 114  LLNLTGLHVKNAQPCHIPTC*GSSIC-APQCQSSHCKW 4
            L N TG      +PC++P+C    +C  P C++ +C W
Sbjct: 3904 LANCTGGAASQERPCNLPSCTELPLCPGPGCEAGNCSW 3941


>sp|Q54WB6|PSMG1_DICDI Proteasome assembly chaperone 1
           OS=Dictyostelium discoideum GN=psmg1 PE=3 SV=1
          Length = 272

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -3

Query: 351 TLLQPSDIIHNRRNSIHIYS*VCQIHCTPATS*KNLYDACLNFTQIVSLT 202
           T L+ S+II N   S   +  +CQ+   PA S  NLY++ LN   + S T
Sbjct: 184 TPLESSNIIENLSAS---FLTICQVKYIPACSILNLYESHLNIESVQSFT 230


>sp|Q9I4S5|PDXH_PSEAE Pyridoxine/pyridoxamine 5'-phosphate oxidase
           OS=Pseudomonas aeruginosa GN=pdxH PE=3 SV=1
          Length = 215

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 26  HWGAQMLLPQQVGMWQG 76
           HWG   LLPQ++  WQG
Sbjct: 174 HWGGYRLLPQRIEFWQG 190


>sp|Q02IL5|PDXH_PSEAB Pyridoxine/pyridoxamine 5'-phosphate oxidase
           OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pdxH
           PE=3 SV=1
          Length = 215

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 26  HWGAQMLLPQQVGMWQG 76
           HWG   LLPQ++  WQG
Sbjct: 174 HWGGYRLLPQRIEFWQG 190


>sp|A6V9E9|PDXH_PSEA7 Pyridoxine/pyridoxamine 5'-phosphate oxidase
           OS=Pseudomonas aeruginosa (strain PA7) GN=pdxH PE=3 SV=1
          Length = 215

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 26  HWGAQMLLPQQVGMWQG 76
           HWG   LLPQ++  WQG
Sbjct: 174 HWGGYRLLPQRIEFWQG 190


>sp|Q5Z236|PDXH_NOCFA Pyridoxine/pyridoxamine 5'-phosphate oxidase
           OS=Nocardia farcinica GN=pdxH PE=3 SV=2
          Length = 225

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 26  HWGAQMLLPQQVGMWQG 76
           HWG  +L P+QV  WQG
Sbjct: 184 HWGGYLLRPEQVEFWQG 200


>sp|A8MXZ3|KR923_HUMAN Putative keratin-associated protein 9-2-like
           3 OS=Homo sapiens PE=3 SV=1
          Length = 250

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 75  PCHIPTC*GSSICAPQC-QSSHC 10
           PC  PTC GSS C+  C +SS+C
Sbjct: 189 PCCQPTCGGSSCCSQTCNESSYC 211


>sp|Q3KGY4|PDXH_PSEPF Pyridoxine/pyridoxamine 5'-phosphate oxidase
           OS=Pseudomonas fluorescens (strain Pf0-1) GN=pdxH PE=3
           SV=1
          Length = 215

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 26  HWGAQMLLPQQVGMWQG 76
           HWG   LLP++V  WQG
Sbjct: 174 HWGGYRLLPERVEFWQG 190


>sp|Q8CNE0|MOAC_STAES Molybdenum cofactor biosynthesis protein C
           OS=Staphylococcus epidermidis (strain ATCC 12228)
           GN=moaC PE=3 SV=1
          Length = 162

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 187 ELSVMCQRNNLSKVETSVIEILLRSGRSAVN---LTNSGVDVYRVATIVYDITRLQKSGV 357
           ++S     NN      ++  ++  +G++ V    LT + V     A  +YD+T+    G+
Sbjct: 85  DISFKWDSNNDDSYRLNITAVVSTTGKTGVEMEALTAASV----TALTIYDMTKAIDKGM 140

Query: 358 ILGADYLKLVGGTMTG 405
           I+G  YL+   G  +G
Sbjct: 141 IIGETYLESKSGGKSG 156


>sp|Q5HLX5|MOAC_STAEQ Molybdenum cofactor biosynthesis protein C
           OS=Staphylococcus epidermidis (strain ATCC 35984 /
           RP62A) GN=moaC PE=3 SV=1
          Length = 162

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 187 ELSVMCQRNNLSKVETSVIEILLRSGRSAVN---LTNSGVDVYRVATIVYDITRLQKSGV 357
           ++S     NN      ++  ++  +G++ V    LT + V     A  +YD+T+    G+
Sbjct: 85  DISFKWDSNNDDSYRLNITAVVSTTGKTGVEMEALTAASV----TALTIYDMTKAIDKGM 140

Query: 358 ILGADYLKLVGGTMTG 405
           I+G  YL+   G  +G
Sbjct: 141 IIGETYLESKSGGKSG 156
tr_hit_id Q9D3H7
Definition tr|Q9D3H7|Q9D3H7_MOUSE Novel member of the keratin associated protein 9 (Krtap9) family OS=Mus musculus
Align length 24
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912912|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_C05.
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9D3H7|Q9D3H7_MOUSE Novel member of the keratin associated pr...    34   3.2  
tr|Q9D141|Q9D141_MOUSE Novel member of the keratin associated pr...    34   3.2  
tr|Q64526|Q64526_MOUSE Keratin associated protein 9-1 OS=Mus mus...    34   3.2  
tr|A2A4M2|A2A4M2_MOUSE Novel member of the keratin associated pr...    34   3.2  
tr|Q9XSV8|Q9XSV8_BOVIN SCO-spondin (Fragment) OS=Bos taurus GN=s...    34   3.2  
tr|A2VEC8|A2VEC8_CANFA SCO-spondin OS=Canis familiaris GN=sspo P...    34   3.2  
tr|B0TT10|B0TT10_SHEHH ABC transporter related OS=Shewanella hal...    33   5.4  
tr|A8G3T2|A8G3T2_PROM2 Probable glutathione reductase (NADPH) OS...    33   9.3  
tr|A2BQ48|A2BQ48_PROMS Probable glutathione reductase (NADPH) OS...    33   9.3  
tr|A1R569|A1R569_ARTAT Putative 23S rRNA methyltransferase OS=Ar...    33   9.3  
tr|A3U183|A3U183_9RHOB FixK2 transcription regulator OS=Oceanico...    33   9.3  
tr|A9UZU0|A9UZU0_MONBE Predicted protein OS=Monosiga brevicollis...    33   9.3  

>tr|Q9D3H7|Q9D3H7_MOUSE Novel member of the keratin associated
           protein 9 (Krtap9) family OS=Mus musculus
           GN=OTTMUSG00000002191 PE=2 SV=1
          Length = 191

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 78  QPCHIPTC*GSSICAPQCQSSHCK 7
           QPC  P+C GSS C P CQ++ C+
Sbjct: 35  QPCCQPSCCGSSCCQPCCQTTCCR 58


>tr|Q9D141|Q9D141_MOUSE Novel member of the keratin associated
           protein 9 (Krtap9) family OS=Mus musculus
           GN=OTTMUSG00000002206 PE=2 SV=1
          Length = 195

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 78  QPCHIPTC*GSSICAPQCQSSHCK 7
           QPC  P+C GSS C P CQ++ C+
Sbjct: 35  QPCCQPSCCGSSCCQPCCQTTCCR 58


>tr|Q64526|Q64526_MOUSE Keratin associated protein 9-1 OS=Mus
           musculus GN=Krtap9-1 PE=2 SV=1
          Length = 186

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 78  QPCHIPTC*GSSICAPQCQSSHCK 7
           QPC  P+C GSS C P CQ++ C+
Sbjct: 35  QPCCQPSCCGSSCCQPCCQTTCCR 58


>tr|A2A4M2|A2A4M2_MOUSE Novel member of the keratin associated
           protein 9 (Krtap9) family OS=Mus musculus
           GN=OTTMUSG00000002191 PE=4 SV=1
          Length = 211

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 78  QPCHIPTC*GSSICAPQCQSSHCK 7
           QPC  P+C GSS C P CQ++ C+
Sbjct: 35  QPCCQPSCCGSSCCQPCCQTTCCR 58


>tr|Q9XSV8|Q9XSV8_BOVIN SCO-spondin (Fragment) OS=Bos taurus
           GN=sco-spondin PE=2 SV=1
          Length = 1637

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 114 LLNLTGLHVKNAQPCHIPTC*GSSIC-APQCQSSHCKW 4
           L N TG      +PC++P+C    +C  P C++ +C W
Sbjct: 395 LANCTGGAASQERPCNLPSCTELPLCPGPGCEAGNCSW 432


>tr|A2VEC8|A2VEC8_CANFA SCO-spondin OS=Canis familiaris GN=sspo PE=2
            SV=1
          Length = 5110

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 114  LLNLTGLHVKNAQPCHIPTC*GSSIC-APQCQSSHCKW 4
            L N TG      +PC++P+C   S C +P C + +C W
Sbjct: 3868 LANCTGGEASQERPCNLPSCTEPSPCPSPGCVAGNCSW 3905


>tr|B0TT10|B0TT10_SHEHH ABC transporter related OS=Shewanella
           halifaxensis (strain HAW-EB4) GN=Shal_2010 PE=3 SV=1
          Length = 494

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
 Frame = +1

Query: 103 QIKERFKTFGQETEGLLSILLEMRQLMSELSVMCQRNNLS----KVETSVIEILLRSGRS 270
           QI E F  F Q TE LL   LE++ L S+     + N++S    K E   I  L+ SGRS
Sbjct: 244 QINEEFSKFNQPTEQLL---LEVKNLTSK-----KFNDISFKVNKGEILGIYGLVGSGRS 295

Query: 271 AVNLTNSGVDVYRVATIVYDITRLQK 348
            V     GVD +   TI ++ +  +K
Sbjct: 296 EVLNAIFGVDEFDTGTICFNDSEFKK 321


>tr|A8G3T2|A8G3T2_PROM2 Probable glutathione reductase (NADPH)
           OS=Prochlorococcus marinus (strain MIT 9215) GN=gor PE=3
           SV=1
          Length = 459

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +1

Query: 184 SELSVMCQRNNLSKVETSVIEILLRSGRSAVNLTNSGVDVYRVATIVYDITRLQKSGVIL 363
           +EL ++C      K + S  +IL+  G     L   GVD+   +  ++++ +  KS +I+
Sbjct: 125 NELEIICSNTKKIKNKISSKKILISVGGKPKKLNIPGVDLAWTSDDIFELEKFPKSILIV 184

Query: 364 GADYL 378
           G  Y+
Sbjct: 185 GGGYI 189


>tr|A2BQ48|A2BQ48_PROMS Probable glutathione reductase (NADPH)
           OS=Prochlorococcus marinus (strain AS9601) GN=gor PE=3
           SV=1
          Length = 454

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +1

Query: 184 SELSVMCQRNNLSKVETSVIEILLRSGRSAVNLTNSGVDVYRVATIVYDITRLQKSGVIL 363
           +EL ++C      K + S  +IL+  G     L   GVD+   +  ++++ +  KS +I+
Sbjct: 120 NELEIICSNTKKIKNKISSKKILISVGGKPKKLNIPGVDLAWTSDDIFELEKFPKSILIV 179

Query: 364 GADYL 378
           G  Y+
Sbjct: 180 GGGYI 184


>tr|A1R569|A1R569_ARTAT Putative 23S rRNA methyltransferase
           OS=Arthrobacter aurescens (strain TC1) GN=AAur_1615 PE=3
           SV=1
          Length = 303

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/66 (34%), Positives = 32/66 (48%)
 Frame = +1

Query: 190 LSVMCQRNNLSKVETSVIEILLRSGRSAVNLTNSGVDVYRVATIVYDITRLQKSGVILGA 369
           ++VMCQ  +     T V+     +G  AV LT S VD+Y    +      L    V+LGA
Sbjct: 132 IAVMCQVRDPGNAGT-VLRAADAAGADAVVLTGSSVDIYNPKAVRSTAGSLFHLPVVLGA 190

Query: 370 DYLKLV 387
           D  +LV
Sbjct: 191 DVEELV 196