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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912914
Clone id YMU001_000024_C07
Library
Length 358
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGGATGAGGGATCTTCCATAAAATCCAAAAAACATCAGCAAGAGACATTGCTAGTGGT
GAGGAGAAATTGATGTGAAATTGTCACATAATTGCCTCCACAAACTCCAACAAGACCGCC
TATGTAGGGATGATCTAGAATGTTGAAGGAAGCCAGAAGTGGATGGGCACTTGTCACGAA
TGATCTGTTAAGAGAAACCAAAGCACATGTGCACGAAACGTCTATGGGCCAGTAAAATAA
CAGGAAAGACCACGATTTAAGGGAAGTACAGCACTGCAAAATCTCCCATGAGGGTTGCAG
CTGTAGAAATACCAGCAAACCTCCAAATAACTGACCAGGTGTCTAGATAGAGGTGGGG
■■Homology search results ■■ -
sp_hit_id O88446
Definition sp|O88446|S22A3_RAT Solute carrier family 22 member 3 OS=Rattus norvegicus
Align length 27
Score (bit) 32.3
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912914|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_C07.
         (358 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O88446|S22A3_RAT Solute carrier family 22 member 3 OS=Rattus ...    32   0.76 
sp|Q9WTW5|S22A3_MOUSE Solute carrier family 22 member 3 OS=Mus m...    32   0.76 
sp|Q89AL5|CLS_BUCBP Cardiolipin synthetase OS=Buchnera aphidicol...    32   1.00 
sp|O75751|S22A3_HUMAN Solute carrier family 22 member 3 OS=Homo ...    31   1.7  
sp|Q63089|S22A1_RAT Solute carrier family 22 member 1 OS=Rattus ...    30   4.9  
sp|O08966|S22A1_MOUSE Solute carrier family 22 member 1 OS=Mus m...    30   4.9  
sp|O15245|S22A1_HUMAN Solute carrier family 22 member 1 OS=Homo ...    30   4.9  
sp|P19557|ENV_BIV29 Envelope glycoprotein OS=Bovine immunodefici...    29   6.5  

>sp|O88446|S22A3_RAT Solute carrier family 22 member 3 OS=Rattus
           norvegicus GN=Slc22a3 PE=2 SV=1
          Length = 551

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 294 PSWEILQCCTSLKSWSFLLFYWPIDVS 214
           PSW+ +Q   SL S+ FLL+YW +  S
Sbjct: 260 PSWQGIQLAISLPSFLFLLYYWVVPES 286


>sp|Q9WTW5|S22A3_MOUSE Solute carrier family 22 member 3 OS=Mus
           musculus GN=Slc22a3 PE=2 SV=1
          Length = 551

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 294 PSWEILQCCTSLKSWSFLLFYWPIDVS 214
           PSW+ +Q   SL S+ FLL+YW +  S
Sbjct: 260 PSWQGIQLAISLPSFLFLLYYWVVPES 286


>sp|Q89AL5|CLS_BUCBP Cardiolipin synthetase OS=Buchnera aphidicola
           subsp. Baizongia pistaciae GN=cls PE=3 SV=1
          Length = 490

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
 Frame = -2

Query: 264 SLKSWSFLLFYWPIDVSCTCALVSLNRSFVTSAHPLLASFNI----------LDHPYIG 118
           ++ +W  ++ YW I +  TC ++S  R+  +SA  LL  + I          L+ PY+G
Sbjct: 7   TITTWLIIISYWFIIIIVTCRILSKRRAISSSAAWLLVIYIIPFIGICTWFLLEEPYLG 65


>sp|O75751|S22A3_HUMAN Solute carrier family 22 member 3 OS=Homo
           sapiens GN=SLC22A3 PE=1 SV=1
          Length = 556

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = -2

Query: 294 PSWEILQCCTSLKSWSFLLFYWPIDVSCTCALVSLNRSFVTSAHPLLASFNILDHPYIGG 115
           P+W+ +Q   +L S+ FLL+YW +  S       + R     A  +L             
Sbjct: 265 PNWQGIQLAITLPSFLFLLYYWVVPESPRWL---ITRKKGDKALQILRR----------- 310

Query: 114 LVGVCGGNYVTISH-QFLLTTSNVSC*CFLDFMEDP 10
            +  C G Y++ ++ +  +T   VS   FLD +  P
Sbjct: 311 -IAKCNGKYLSSNYSEITVTDEEVSNPSFLDLVRTP 345


>sp|Q63089|S22A1_RAT Solute carrier family 22 member 1 OS=Rattus
           norvegicus GN=Slc22a1 PE=1 SV=1
          Length = 556

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 294 PSWEILQCCTSLKSWSFLLFYW 229
           P W  LQ   SL ++ FLL+YW
Sbjct: 260 PDWRWLQLAVSLPTFLFLLYYW 281


>sp|O08966|S22A1_MOUSE Solute carrier family 22 member 1 OS=Mus
           musculus GN=Slc22a1 PE=2 SV=2
          Length = 556

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 294 PSWEILQCCTSLKSWSFLLFYW 229
           P W  LQ   SL ++ FLL+YW
Sbjct: 260 PDWRWLQLAVSLPTFLFLLYYW 281


>sp|O15245|S22A1_HUMAN Solute carrier family 22 member 1 OS=Homo
           sapiens GN=SLC22A1 PE=1 SV=1
          Length = 554

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 294 PSWEILQCCTSLKSWSFLLFYWPIDVS 214
           P W  LQ   SL ++ FLL+YW +  S
Sbjct: 259 PHWRWLQLAVSLPTFLFLLYYWCVPES 285


>sp|P19557|ENV_BIV29 Envelope glycoprotein OS=Bovine
           immunodeficiency virus (strain R29) GN=env PE=2 SV=1
          Length = 904

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
 Frame = -3

Query: 341 HLVSYLEVC------WYFYSCNPHGRFC 276
           H VSYLE          F+ C PHGR+C
Sbjct: 624 HRVSYLEYVEEIRQKQVFFGCKPHGRYC 651
tr_hit_id B4HKG7
Definition tr|B4HKG7|B4HKG7_DROSE GM26277 OS=Drosophila sechellia
Align length 71
Score (bit) 36.6
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912914|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_C07.
         (358 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4HKG7|B4HKG7_DROSE GM26277 OS=Drosophila sechellia GN=GM2627...    37   0.65 
tr|B4QX87|B4QX87_DROSI GD20812 OS=Drosophila simulans GN=GD20812...    36   0.85 
tr|Q7TQY8|Q7TQY8_MOUSE Olfactory receptor 1275 OS=Mus musculus G...    33   7.2  
tr|Q94XD8|Q94XD8_THRIM Cytochrome c oxidase subunit 3 OS=Thrips ...    33   9.4  

>tr|B4HKG7|B4HKG7_DROSE GM26277 OS=Drosophila sechellia GN=GM26277
           PE=4 SV=1
          Length = 277

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 288 WEILQCCTSLKSWSFLLFYWPIDVSCTCALVSLNRSFVTSAHPLLASFNILDHPYIGGLV 109
           W  L+C  +   +++L   W I+   + A+  L        H +++SFN LD P++  L+
Sbjct: 136 WRGLKCMYAKGGFTYLFTGWKINSLSSTAVAVLYTPISDQVHTMISSFNRLDEPWLSDLI 195

Query: 108 GVC-GGNYVTI 79
            +   G+ +T+
Sbjct: 196 TMALTGSIITV 206


>tr|B4QX87|B4QX87_DROSI GD20812 OS=Drosophila simulans GN=GD20812
           PE=4 SV=1
          Length = 277

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 288 WEILQCCTSLKSWSFLLFYWPIDVSCTCALVSLNRSFVTSAHPLLASFNILDHPYIGGLV 109
           W  L+C  +   +++L   W I+   + A+  L        H +++SFN LD P++  L+
Sbjct: 136 WRGLKCMYAKGGFTYLFTGWKINSLSSTAVAVLYTPISDQIHTMISSFNRLDEPWLSDLI 195

Query: 108 GVC-GGNYVTI 79
            +   G+ +T+
Sbjct: 196 TMALTGSIITV 206


>tr|Q7TQY8|Q7TQY8_MOUSE Olfactory receptor 1275 OS=Mus musculus
           GN=Olfr1275 PE=2 SV=1
          Length = 312

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = -1

Query: 349 YLDTWSVIWRFAGISTAATLMGDFAVLYFP*IVVFP-------VILLAHRRFVHMCFGFS 191
           Y  T   ++ FA IS AAT +G+F+V++   IV+F          LLA+  FV  CF  S
Sbjct: 20  YRPTQYFLFAFAIISYAATFLGNFSVVF---IVIFDPHLHSPMYFLLANLSFVDFCFSTS 76


>tr|Q94XD8|Q94XD8_THRIM Cytochrome c oxidase subunit 3 OS=Thrips
           imaginis GN=cox3 PE=3 SV=2
          Length = 260

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = -2

Query: 246 FLLFYWPIDVSCTCALVSLNRSFVTSAHPLLASFNILDHPYIGGLVGVCGGNYVTISHQF 67
           FL F+W    SC    + + +++       + SFN +  P +  ++ +  G  +T +H F
Sbjct: 93  FLSFFWAFFHSCLSPDIFIGQNWPCKG---IKSFNPMGIPLMNTMILLSSGITLTAAHHF 149

Query: 66  LLTTSNVSC*CFL 28
           ++T +   C  FL
Sbjct: 150 IMTGNKKECNKFL 162