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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912915
Clone id YMU001_000024_C08
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATTTTGGGGGTGCCGTTTGGGGGGGGGTGATGGGGTGTGCAAGACGGAACTGTTGACAT
CCCAGTTCGAAATTTCTGCAGTAGAAGGCTAAGCTGGTACTTGCAGTAACAACAAAGCAG
TCCCGCGCCCCTGCCCCCCAGGAATGAAAAGTTTTCCCACTAAATATTTTTGCTTTACGA
AAAACTGTTCTTAGCAGATGCAGAAATGAAACATTGCATCTGCTGTTGAACCAAACTAGA
AACTTAAGAGGAAGCAAACAAGAAGAAAGAAAACAGGTAAAAACAAACAAAAATCTAACT
GACCAATTAGATCTTATCCAACTTACTTGAAAAAGCCTTTGATGCTGCATCAATAGCAGC
CTTGGTTTCCAGTTCACCCATGTGTGGAACCTCCACAAGGACTTCTCCAGTTGCAGGATT
GTGCACCTGTACATAAGAAAACTGACATAACCTGAAAATTCCCAGATCTATCTAACCTGT
TTAACTGTCATTCCCATTATTAACAAATCCTTTACATCATATAGAGATTGTGA
■■Homology search results ■■ -
sp_hit_id Q85FP0
Definition sp|Q85FP0|MATK_ADICA Maturase K OS=Adiantum capillus-veneris
Align length 29
Score (bit) 46.2
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912915|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_C08.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FP0|MATK_ADICA Maturase K OS=Adiantum capillus-veneris GN=...    46   1e-04
sp|Q8BH00|AL8A1_MOUSE Aldehyde dehydrogenase family 8 member A1 ...    41   0.004
sp|Q9H2A2|AL8A1_HUMAN Aldehyde dehydrogenase family 8 member A1 ...    40   0.007
sp|P25526|GABD_ECOLI Succinate-semialdehyde dehydrogenase [NADP+...    39   0.012
sp|Q0P5F9|AL8A1_BOVIN Aldehyde dehydrogenase family 8 member A1 ...    39   0.016
sp|P52713|MMSA_CAEEL Probable methylmalonate-semialdehyde dehydr...    39   0.020
sp|Q9SAK4|SSDH_ARATH Succinate-semialdehyde dehydrogenase, mitoc...    38   0.027
sp|Q63B74|IOLA2_BACCZ Methylmalonate semialdehyde dehydrogenase ...    38   0.027
sp|A4WAR9|ABDH_ENT38 Gamma-aminobutyraldehyde dehydrogenase OS=E...    38   0.035
sp|Q02253|MMSA_RAT Methylmalonate-semialdehyde dehydrogenase [ac...    37   0.046
sp|Q9EQ20|MMSA_MOUSE Methylmalonate-semialdehyde dehydrogenase [...    37   0.060
sp|Q7KW39|MMSA_DROME Probable methylmalonate-semialdehyde dehydr...    37   0.078
sp|A5YBJ3|IOLA_LACCA Methylmalonate semialdehyde dehydrogenase [...    37   0.078
sp|Q4V1F6|IOLA3_BACCZ Methylmalonate semialdehyde dehydrogenase ...    37   0.078
sp|Q6HIK3|IOLA2_BACHK Methylmalonate semialdehyde dehydrogenase ...    37   0.078
sp|Q81QB6|IOLA2_BACAN Methylmalonate semialdehyde dehydrogenase ...    37   0.078
sp|P55653|GABD_RHISN Probable succinate-semialdehyde dehydrogena...    37   0.078
sp|Q9UTM8|SSDH2_SCHPO Putative succinate-semialdehyde dehydrogen...    36   0.10 
sp|Q02252|MMSA_HUMAN Methylmalonate-semialdehyde dehydrogenase [...    36   0.10 
sp|Q5L025|IOLA1_GEOKA Methylmalonate semialdehyde dehydrogenase ...    36   0.10 
sp|O75486|SUPT3_HUMAN Transcription initiation protein SPT3 homo...    36   0.13 
sp|Q8ZPC9|ABDH_SALTY Gamma-aminobutyraldehyde dehydrogenase OS=S...    36   0.13 
sp|A8AGJ9|ABDH_CITK8 Gamma-aminobutyraldehyde dehydrogenase OS=C...    36   0.13 
sp|Q0WM29|MMSA_ARATH Methylmalonate-semialdehyde dehydrogenase [...    35   0.17 
sp|Q07536|MMSA_BOVIN Methylmalonate-semialdehyde dehydrogenase [...    35   0.23 
sp|A8FDV4|IOLA_BACP2 Methylmalonate semialdehyde dehydrogenase [...    35   0.23 
sp|Q5KYK0|IOLA3_GEOKA Methylmalonate semialdehyde dehydrogenase ...    35   0.23 
sp|A4IPF5|IOLA2_GEOTN Methylmalonate semialdehyde dehydrogenase ...    35   0.23 
sp|Q8Z747|ABDH_SALTI Gamma-aminobutyraldehyde dehydrogenase OS=S...    35   0.23 
sp|A0REB5|IOLA2_BACAH Methylmalonate semialdehyde dehydrogenase ...    35   0.30 

>sp|Q85FP0|MATK_ADICA Maturase K OS=Adiantum capillus-veneris
           GN=matK PE=2 SV=2
          Length = 500

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = -1

Query: 215 NVSFLHLLRTVFRKAKIFSGKTFHSWGAG 129
           +VSFLHLLR VFRK KIF GKTF+S G G
Sbjct: 175 DVSFLHLLRIVFRKRKIFCGKTFYSPGGG 203


>sp|Q8BH00|AL8A1_MOUSE Aldehyde dehydrogenase family 8 member A1
           OS=Mus musculus GN=Aldh8a1 PE=1 SV=1
          Length = 487

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 20/44 (45%), Positives = 31/44 (70%)
 Frame = -3

Query: 462 GIFRLCQFSYVQVHNPATGEVLVEVPHMGELETKAAIDAASKAF 331
           G F  C  SY+  ++P+TGEV  +VP+ G+ E +AA++AA +AF
Sbjct: 16  GKFLPCN-SYIDSYDPSTGEVYCKVPNSGKEEIEAAVEAAREAF 58


>sp|Q9H2A2|AL8A1_HUMAN Aldehyde dehydrogenase family 8 member A1
           OS=Homo sapiens GN=ALDH8A1 PE=1 SV=1
          Length = 487

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 21/46 (45%), Positives = 30/46 (65%)
 Frame = -3

Query: 462 GIFRLCQFSYVQVHNPATGEVLVEVPHMGELETKAAIDAASKAFSS 325
           G F  C  SY+  ++P+TGEV   VP+ G+ E +AA+ AA +AF S
Sbjct: 16  GKFLPCS-SYIDSYDPSTGEVYCRVPNSGKDEIEAAVKAAREAFPS 60


>sp|P25526|GABD_ECOLI Succinate-semialdehyde dehydrogenase [NADP+]
           OS=Escherichia coli (strain K12) GN=gabD PE=3 SV=1
          Length = 482

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = -3

Query: 432 VQVHNPATGEVLVEVPHMGELETKAAIDAASKA 334
           + V NPA G+ L  VP MG  ET+AAIDAA++A
Sbjct: 28  IDVTNPANGDKLGSVPKMGADETRAAIDAANRA 60


>sp|Q0P5F9|AL8A1_BOVIN Aldehyde dehydrogenase family 8 member A1
           OS=Bos taurus GN=ALDH8A1 PE=2 SV=1
          Length = 487

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = -3

Query: 462 GIFRLCQFSYVQVHNPATGEVLVEVPHMGELETKAAIDAASKAF 331
           G F  C  SY+  ++P+TGEV   VP+ G+ E +AA++AA  AF
Sbjct: 16  GKFLPCS-SYLDSYDPSTGEVYCHVPNSGKEEIEAAVEAARAAF 58


>sp|P52713|MMSA_CAEEL Probable methylmalonate-semialdehyde
           dehydrogenase [acylating], mitochondrial
           OS=Caenorhabditis elegans GN=alh-8 PE=2 SV=1
          Length = 523

 Score = 38.5 bits (88), Expect = 0.020
 Identities = 16/37 (43%), Positives = 27/37 (72%)
 Frame = -3

Query: 435 YVQVHNPATGEVLVEVPHMGELETKAAIDAASKAFSS 325
           +V++ NPAT EV+  VP+  + E +AA+D+A  AF++
Sbjct: 46  FVELTNPATNEVIAMVPNATQAEMQAAVDSAKNAFNT 82


>sp|Q9SAK4|SSDH_ARATH Succinate-semialdehyde dehydrogenase,
           mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1
           SV=2
          Length = 528

 Score = 38.1 bits (87), Expect = 0.027
 Identities = 17/36 (47%), Positives = 27/36 (75%)
 Frame = -3

Query: 432 VQVHNPATGEVLVEVPHMGELETKAAIDAASKAFSS 325
           ++V+NPATGE++ +V  MG  ET  AI ++ +AF+S
Sbjct: 70  IKVNNPATGEIIADVACMGTKETNDAIASSYEAFTS 105


>sp|Q63B74|IOLA2_BACCZ Methylmalonate semialdehyde dehydrogenase
           [acylating] 2 OS=Bacillus cereus (strain ZK / E33L)
           GN=iolA2 PE=3 SV=1
          Length = 488

 Score = 38.1 bits (87), Expect = 0.027
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = -3

Query: 426 VHNPATGEVLVEVPHMGELETKAAIDAASKAFSS 325
           V+NPATGEV+ +VP   +++ + A+ AA++AF S
Sbjct: 29  VYNPATGEVIAQVPLSTKVDVEQAVSAANEAFKS 62


>sp|A4WAR9|ABDH_ENT38 Gamma-aminobutyraldehyde dehydrogenase
           OS=Enterobacter sp. (strain 638) GN=Ent638_2124 PE=3
           SV=1
          Length = 474

 Score = 37.7 bits (86), Expect = 0.035
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -3

Query: 426 VHNPATGEVLVEVPHMGELETKAAIDAASKAFS 328
           V+NPATGEVL+E+      +  AA+ AA +AFS
Sbjct: 21  VYNPATGEVLLEIAEASAAQVDAAVRAADRAFS 53


>sp|Q02253|MMSA_RAT Methylmalonate-semialdehyde dehydrogenase
           [acylating], mitochondrial OS=Rattus norvegicus
           GN=Aldh6a1 PE=1 SV=1
          Length = 535

 Score = 37.4 bits (85), Expect = 0.046
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 435 YVQVHNPATGEVLVEVPHMGELETKAAIDAASKAFSSKLD 316
           ++ +HNPAT EV+  VP   + E +AA+ A  +AF +  D
Sbjct: 56  WIDIHNPATNEVVGRVPQSTKAEMEAAVAACKRAFPAWAD 95
tr_hit_id A9BQP4
Definition tr|A9BQP4|A9BQP4_DELAS Succinic semialdehyde dehydrogenase OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
Align length 37
Score (bit) 47.4
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912915|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_C08.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9BQP4|A9BQP4_DELAS Succinic semialdehyde dehydrogenase OS=De...    47   5e-04
tr|Q2F6F8|Q2F6F8_ANTEL Methylmalonate semialdehyde dehydrogenase...    47   5e-04
tr|Q0BZS3|Q0BZS3_HYPNA Succinate-semialdehyde dehydrogenase OS=H...    47   8e-04
tr|A7QMK3|A7QMK3_VITVI Chromosome chr19 scaffold_126, whole geno...    47   8e-04
tr|B1Q3F8|B1Q3F8_SOLLC Succinic semialdehyde dehydrogenase OS=So...    46   0.001
tr|Q5P4F1|Q5P4F1_AZOSE Succinate-semialdehyde dehydrogenase OS=A...    45   0.002
tr|Q3IVT7|Q3IVT7_RHOS4 Aldehyde dehydrogenase OS=Rhodobacter sph...    45   0.002
tr|A4WXW5|A4WXW5_RHOS5 Putative uncharacterized protein OS=Rhodo...    45   0.002
tr|A3PQE9|A3PQE9_RHOS1 Betaine-aldehyde dehydrogenase OS=Rhodoba...    45   0.002
tr|A9RFE9|A9RFE9_PHYPA SSADH OS=Physcomitrella patens subsp. pat...    45   0.003
tr|B2JSD6|B2JSD6_BURP8 Succinic semialdehyde dehydrogenase OS=Bu...    44   0.004
tr|A4VFQ2|A4VFQ2_PSEU5 Succinate-semialdehyde dehydrogenase OS=P...    44   0.004
tr|Q4KKA2|Q4KKA2_PSEF5 Succinate-semialdehyde dehydrogenase OS=P...    44   0.005
tr|Q3KJX5|Q3KJX5_PSEPF Succinate semialdehyde dehydrogenase OS=P...    44   0.005
tr|A7QMK5|A7QMK5_VITVI Chromosome chr19 scaffold_126, whole geno...    44   0.005
tr|A5BNV0|A5BNV0_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|Q9I6M5|Q9I6M5_PSEAE Succinate-semialdehyde dehydrogenase OS=P...    44   0.007
tr|Q02UF2|Q02UF2_PSEAB Succinate-semialdehyde dehydrogenase, NAD...    44   0.007
tr|A7IKF9|A7IKF9_XANP2 Succinic semialdehyde dehydrogenase OS=Xa...    44   0.007
tr|B7V2H7|B7V2H7_PSEAE Succinate-semialdehyde dehydrogenase OS=P...    44   0.007
tr|A6UY52|A6UY52_PSEA7 Succinate-semialdehyde dehydrogenase OS=P...    43   0.009
tr|A4XNT9|A4XNT9_PSEMY Succinate semialdehyde dehydrogenase OS=P...    43   0.009
tr|B8K735|B8K735_VIBPA Succinate semialdehyde dehydrogenase OS=V...    43   0.009
tr|B0DJH6|B0DJH6_LACBS Predicted protein OS=Laccaria bicolor (st...    43   0.009
tr|A1BBY5|A1BBY5_PARDP Succinate semialdehyde dehydrogenase OS=P...    43   0.012
tr|Q88RC0|Q88RC0_PSEPK Succinate-semialdehyde dehydrogenase OS=P...    42   0.015
tr|Q7NR57|Q7NR57_CHRVO Succinate-semialdehyde dehydrogenase [NAD...    42   0.015
tr|B0KH31|B0KH31_PSEPG Succinic semialdehyde dehydrogenase OS=Ps...    42   0.015
tr|A5VWZ2|A5VWZ2_PSEP1 Succinate semialdehyde dehydrogenase OS=P...    42   0.015
tr|Q7X4H9|Q7X4H9_PSEPU Succinate-semialdehyde dehydrogenase (Fra...    42   0.015

>tr|A9BQP4|A9BQP4_DELAS Succinic semialdehyde dehydrogenase
           OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
           GN=Daci_0100 PE=4 SV=1
          Length = 484

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = -3

Query: 438 SYVQVHNPATGEVLVEVPHMGELETKAAIDAASKAFS 328
           S + VHNPATGE +  VP MGE ET+ AI AA +AF+
Sbjct: 28  SRIDVHNPATGEAVGHVPRMGEAETQRAIAAAERAFA 64


>tr|Q2F6F8|Q2F6F8_ANTEL Methylmalonate semialdehyde
           dehydrogenase-like protein (Fragment) OS=Anthopleura
           elegantissima PE=2 SV=1
          Length = 544

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = -3

Query: 528 ISI*CKGFVNNGNDS*TG*IDLGIFRLCQFS-YVQVHNPATGEVLVEVPHMGELETKAAI 352
           +S+ C+ ++ NG  + T  +  G F   + S ++ +HNPAT EV+  VP     E +AA+
Sbjct: 34  LSVACRRYMTNGTPATTKLLINGQFIESKTSKWIDLHNPATNEVITRVPESTPEEMQAAV 93

Query: 351 DAASKAFSS 325
           DAAS AF S
Sbjct: 94  DAASAAFPS 102


>tr|Q0BZS3|Q0BZS3_HYPNA Succinate-semialdehyde dehydrogenase
           OS=Hyphomonas neptunium (strain ATCC 15444) GN=gabD PE=4
           SV=1
          Length = 486

 Score = 46.6 bits (109), Expect = 8e-04
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -3

Query: 429 QVHNPATGEVLVEVPHMGELETKAAIDAASKAF 331
           +V NPATGE L+ VP MG  ET+ AIDAA+KAF
Sbjct: 31  EVTNPATGETLISVPKMGADETREAIDAAAKAF 63


>tr|A7QMK3|A7QMK3_VITVI Chromosome chr19 scaffold_126, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002099001
           PE=4 SV=1
          Length = 493

 Score = 46.6 bits (109), Expect = 8e-04
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = -3

Query: 432 VQVHNPATGEVLVEVPHMGELETKAAIDAASKAFSS 325
           +QVHNPATGEV+ +VP MG+ ET  AI +A + F+S
Sbjct: 35  IQVHNPATGEVIADVPCMGQPETNDAISSAYEMFNS 70


>tr|B1Q3F8|B1Q3F8_SOLLC Succinic semialdehyde dehydrogenase
           OS=Solanum lycopersicum GN=LeSSADH PE=2 SV=1
          Length = 522

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = -3

Query: 432 VQVHNPATGEVLVEVPHMGELETKAAIDAASKAFSS 325
           ++VHNPATGEV+ +VP MG  ET  AI +A  AFSS
Sbjct: 66  IKVHNPATGEVITDVPCMGGRETNDAISSAYDAFSS 101


>tr|Q5P4F1|Q5P4F1_AZOSE Succinate-semialdehyde dehydrogenase
           OS=Azoarcus sp. (strain EbN1) GN=gabD PE=4 SV=1
          Length = 486

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = -3

Query: 432 VQVHNPATGEVLVEVPHMGELETKAAIDAASKAF 331
           + +HNPATGE L  +P MG  ET+ AIDAAS+A+
Sbjct: 30  IAIHNPATGEQLGTIPKMGAAETRRAIDAASRAW 63


>tr|Q3IVT7|Q3IVT7_RHOS4 Aldehyde dehydrogenase OS=Rhodobacter
           sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
           158) GN=RHOS4_37790 PE=3 SV=1
          Length = 791

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = -3

Query: 462 GIFRLCQFSYVQVHNPATGEVLVEVPHMGELETKAAIDAASKAFS 328
           G F   + + ++V NPATGE+L  +P  GE E +AA+ AA  AFS
Sbjct: 39  GAFTGAETAAIEVENPATGEILARIPAAGEAEIEAAVAAARAAFS 83


>tr|A4WXW5|A4WXW5_RHOS5 Putative uncharacterized protein
           OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
           2.4.3) GN=Rsph17025_3348 PE=3 SV=1
          Length = 792

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = -3

Query: 462 GIFRLCQFSYVQVHNPATGEVLVEVPHMGELETKAAIDAASKAFS 328
           G F   + + ++V NPATGE+L  +P  GE E +AA+ AA  AFS
Sbjct: 39  GAFTGAEAAAIEVENPATGEILARIPAAGEAEIEAAVAAARAAFS 83


>tr|A3PQE9|A3PQE9_RHOS1 Betaine-aldehyde dehydrogenase
           OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
           2.4.9) GN=Rsph17029_3472 PE=3 SV=1
          Length = 791

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = -3

Query: 462 GIFRLCQFSYVQVHNPATGEVLVEVPHMGELETKAAIDAASKAFS 328
           G F   + + ++V NPATGE+L  +P  GE E +AA+ AA  AFS
Sbjct: 39  GAFTGAETAAIEVENPATGEILARIPAAGEAEIEAAVAAARAAFS 83


>tr|A9RFE9|A9RFE9_PHYPA SSADH OS=Physcomitrella patens subsp. patens
           GN=ALDH5B PE=4 SV=1
          Length = 490

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = -3

Query: 426 VHNPATGEVLVEVPHMGELETKAAIDAASKAFSS 325
           V+NPATGE+L  VP MG+ E + AI AAS+AF+S
Sbjct: 31  VNNPATGEILTSVPFMGKREAEKAIAAASQAFTS 64