BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912918|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_C11.
         (343 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZB63|CARY_BACST Carbamoyl-phosphate synthase arginine-speci...    31   1.7  
sp|Q6P7W2|SHKB1_MOUSE SH3KBP1-binding protein 1 OS=Mus musculus ...    30   3.7  
sp|Q9CLI9|PRIM_PASMU DNA primase OS=Pasteurella multocida GN=dna...    30   4.9  
sp|Q60UZ5|MED23_CAEBR Mediator of RNA polymerase II transcriptio...    30   4.9  

>sp|Q9ZB63|CARY_BACST Carbamoyl-phosphate synthase arginine-specific
            large chain OS=Bacillus stearothermophilus GN=carB PE=1
            SV=1
          Length = 1043

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -2

Query: 201  LGQGATFVQSLRPDAVSSGHRLSPTGDLRLPVVATLLLSDKCLVDITNSQSRHLMFVEY 25
            +  G  +V  + P A  +   +S T  + L  +AT LL  K LVDI + ++R L  + Y
Sbjct: 825  IADGNVYVLEVNPRASRTVPIVSKTTGVPLAQIATKLLLGKSLVDIVDEKARGLAVMPY 883


>sp|Q6P7W2|SHKB1_MOUSE SH3KBP1-binding protein 1 OS=Mus musculus
           GN=Shkbp1 PE=1 SV=1
          Length = 704

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = -1

Query: 241 RGNTT*PQSAEANARPRGNF---CSEL-KARRSVLWPSPIPYWRP*TACSSDITSLRQ 80
           RG+ + PQ AEA  R  G+F   C EL +    + WP P P  RP T+  + +T+L++
Sbjct: 642 RGSPSPPQ-AEARRRGAGSFVDRCQELARGAPELRWP-PTPAPRPSTSLGNPLTALKK 697


>sp|Q9CLI9|PRIM_PASMU DNA primase OS=Pasteurella multocida GN=dnaG
           PE=3 SV=1
          Length = 582

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 269 MDVCRISPFSRKYHVASVGRGKRSAKGQLLFRA*GQTQC 153
           MDV  ++ F   Y VAS+G    + + QLLFR+  Q  C
Sbjct: 268 MDVVALAQFGVDYAVASLGTATTAEQIQLLFRSTEQAIC 306


>sp|Q60UZ5|MED23_CAEBR Mediator of RNA polymerase II transcription
           subunit 23 OS=Caenorhabditis briggsae GN=sur-2 PE=3 SV=2
          Length = 1587

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 314 P*EPRQMYAHLTLHDMDVCRISPFSRKYHVASVGRGKRSAKGQLL--FRA*GQTQCPLAI 141
           P +P Q    L+     V +   F +++  A   R KRS  GQ+L  FR+ G  + P   
Sbjct: 527 PPDPSQPTFDLSYQRKAVNQFDAFPKEFLDALTSRAKRSLLGQILSVFRSFGTDKLPSPA 586

Query: 140 AYPLLATL 117
           A+  LA +
Sbjct: 587 AFETLARI 594

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912918|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_C11.
         (343 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q01BZ8|Q01BZ8_OSTTA Cysteinyl-tRNA synthetase (ISS) OS=Ostreo...    34   4.2  
tr|A2C9U5|A2C9U5_PROM3 Phosphoribosylglycinamide formyltransfera...    33   7.1  
tr|Q05QL2|Q05QL2_9SYNE Putative uncharacterized protein OS=Synec...    33   9.3  

>tr|Q01BZ8|Q01BZ8_OSTTA Cysteinyl-tRNA synthetase (ISS)
           OS=Ostreococcus tauri GN=Ot03g05070 PE=4 SV=1
          Length = 503

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 163 RRSVLWPSPIPYWRP*TACSSDITSLRQMPR 71
           RRS     P P+WRP T C+ D  +LR+ PR
Sbjct: 18  RRSCACAPPTPWWRPETKCAFDDETLRRGPR 48


>tr|A2C9U5|A2C9U5_PROM3 Phosphoribosylglycinamide formyltransferase
           OS=Prochlorococcus marinus (strain MIT 9303) GN=purN
           PE=4 SV=1
          Length = 250

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 208 ANARPRGNFCSELKARRSVLWPSP 137
           A++ PR N C E  ARRS++WP P
Sbjct: 24  ASSHPRQNSCYEKDARRSLIWPPP 47


>tr|Q05QL2|Q05QL2_9SYNE Putative uncharacterized protein
           OS=Synechococcus sp. RS9916 GN=RS9916_39421 PE=4 SV=1
          Length = 502

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
 Frame = -2

Query: 330 LIQKAALRAQTDVCPSHTPRYGCVPH*SFLAEIPRSLSRQRQT----LGQGATF---VQS 172
           L++ A  R    + P HT      P    L  +P SLS+Q QT    LG    F   VQ+
Sbjct: 194 LMRNAMRREFKQLNPDHTRIVLVDPGERLLKAMPESLSKQAQTTLEKLGVEMQFKARVQT 253

Query: 171 LRPDAVSSGHRLSPTGDLRLPVVATLLLS-------DKCLVDITNSQSRH 43
           ++P  V+     +P GDLRL     +  +        K L D T  +  H
Sbjct: 254 MQPGEVTMS---TPEGDLRLQAATVIWTAGVRPSHLGKKLADATGCELNH 300