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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912926
Clone id YMU001_000024_D09
Library
Length 605
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCAGTATATCCATAGATGTAACGCACACATGGACTAATTGTGTGCATATAAATACTAAAG
GCCCCTTTGTAAGGGAGCACAACTGTAGACACAAAGTCATGCCCTTGTATACGGTGTAAC
AAAACCTCCTGCAGTTTATAAAGCTCAGAAATCATCAGCCTATCATATCCCCAACAAACC
AAGCAATCCACATCAGCTGTACTGAAATCACATAGACCCACCAAGAAATAAGCCTTTTAA
CAGCTTCGATCGTCCACAACGGGGCACCCAAAGCCTGGCCGAGCTGCAGCCCTCGAGACA
ACTGAAGCACACTATAGCAACCATACACCAGTGGAACGATCAACCACACTGGAGATTGCC
ATTTCCAAACTAGTAATTCTACAAGCGTGTGTACAAGCAACAACGAGACATATGGCACTA
TCATGGCAGCTATTGATAACAAAAGAGGCTCAGCTCCAAAACAGCCGCTCTTTGAACCCA
CATACGCAATGAGAGGTCCAAGCAAACCAACCATGTTCACAAAGAGAGTCCAGAACTTGT
AGCTCGAGGGAATCTCATGACCCAGACGAGGACCATTCTTGTGAAAGTGTCTTTGATTTC
GAGCA
■■Homology search results ■■ -
sp_hit_id O28787
Definition sp|O28787|TGT_ARCFU Putative queuine tRNA-ribosyltransferase OS=Archaeoglobus fulgidus
Align length 37
Score (bit) 32.7
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912926|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_D09.
         (605 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O28787|TGT_ARCFU Putative queuine tRNA-ribosyltransferase OS=...    33   1.5  
sp|P77739|YNIA_ECOLI Uncharacterized protein yniA OS=Escherichia...    30   9.5  
sp|P58065|YNIA_ECO57 Uncharacterized protein yniA OS=Escherichia...    30   9.5  
sp|Q8RDN0|TGT_FUSNN Queuine tRNA-ribosyltransferase OS=Fusobacte...    30   9.5  
sp|P49959|MRE11_HUMAN Double-strand break repair protein MRE11A ...    30   9.5  

>sp|O28787|TGT_ARCFU Putative queuine tRNA-ribosyltransferase
           OS=Archaeoglobus fulgidus GN=tgt PE=3 SV=1
          Length = 403

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 188 DCLVCWGYDRLMISELYKLQEVLLHRIQGHDFVSTVV 78
           DCLVC  Y R  +  LYK  E+L  R+  +  +  VV
Sbjct: 342 DCLVCQNYSRAYLRHLYKANELLYFRLATYHNIYFVV 378


>sp|P77739|YNIA_ECOLI Uncharacterized protein yniA OS=Escherichia
           coli (strain K12) GN=yniA PE=3 SV=1
          Length = 286

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 302 LKHTIATIHQWNDQPHWRLPFPN 370
           L   IA +HQW+DQP + L F N
Sbjct: 106 LGQQIARLHQWSDQPQFGLDFDN 128


>sp|P58065|YNIA_ECO57 Uncharacterized protein yniA OS=Escherichia
           coli O157:H7 GN=yniA PE=3 SV=1
          Length = 286

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 302 LKHTIATIHQWNDQPHWRLPFPN 370
           L   IA +HQW+DQP + L F N
Sbjct: 106 LGQQIARLHQWSDQPQFGLDFDN 128


>sp|Q8RDN0|TGT_FUSNN Queuine tRNA-ribosyltransferase
           OS=Fusobacterium nucleatum subsp. nucleatum GN=tgt PE=3
           SV=1
          Length = 373

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 194 DVDCLVCWGYDRLMISELYKLQEVLLHRIQGH 99
           + DC VC  Y R  I  L K+QEVL  R+  +
Sbjct: 306 ECDCYVCKNYSRAYIRHLIKVQEVLGLRLTSY 337


>sp|P49959|MRE11_HUMAN Double-strand break repair protein MRE11A
           OS=Homo sapiens GN=MRE11A PE=1 SV=3
          Length = 708

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +3

Query: 90  HKVMPLYTV*QNLLQFIKLRNHQPIISPTN----QAIHISCTE 206
           HK+ PL+TV Q  ++ I L NH  I +P N    QAI   C E
Sbjct: 297 HKI-PLHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLE 338
tr_hit_id B8LQ37
Definition tr|B8LQ37|B8LQ37_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 137
Score (bit) 107.0
E-value 4.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912926|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_D09.
         (605 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQ37|B8LQ37_PICSI Putative uncharacterized protein OS=Picea...   107   4e-22
tr|Q7XM58|Q7XM58_ORYSJ OSJNBb0020O11.15 protein (Putative unchar...    99   3e-19
tr|Q0JBF6|Q0JBF6_ORYSJ Os04g0534500 protein OS=Oryza sativa subs...    99   3e-19
tr|Q01IH4|Q01IH4_ORYSA OSIGBa0159I10.11 protein OS=Oryza sativa ...    99   3e-19
tr|Q9M201|Q9M201_ARATH Putative uncharacterized protein T8B10_25...    98   4e-19
tr|Q8GUK3|Q8GUK3_ARATH Putative uncharacterized protein At3g6059...    98   4e-19
tr|Q3E7N7|Q3E7N7_ARATH Uncharacterized protein At3g60590.3 OS=Ar...    98   4e-19
tr|A7PYF8|A7PYF8_VITVI Chromosome chr15 scaffold_37, whole genom...    97   1e-18
tr|A9PJH0|A9PJH0_POPJC Putative uncharacterized protein OS=Popul...    94   5e-18
tr|B6TV94|B6TV94_MAIZE Putative uncharacterized protein OS=Zea m...    93   1e-17
tr|B4FNF1|B4FNF1_MAIZE Putative uncharacterized protein OS=Zea m...    93   1e-17
tr|B2WKE9|B2WKE9_PYRTR Putative uncharacterized protein OS=Pyren...    38   0.52 
tr|Q4P5Y6|Q4P5Y6_USTMA Putative uncharacterized protein OS=Ustil...    36   1.5  
tr|B6Q8H4|B6Q8H4_PENMA Putative uncharacterized protein OS=Penic...    36   2.0  
tr|A0YXV7|A0YXV7_9CYAN Putative uncharacterized protein OS=Lyngb...    35   2.6  
tr|B5HUQ8|B5HUQ8_9ACTO Putative uncharacterized protein OS=Strep...    35   4.4  
tr|A6R782|A6R782_AJECN Predicted protein OS=Ajellomyces capsulat...    35   4.4  
tr|Q2JUQ5|Q2JUQ5_SYNJA Conserved domain protein OS=Synechococcus...    34   5.8  
tr|B6QBH9|B6QBH9_PENMA C6 finger domain protein, putative OS=Pen...    34   7.6  
tr|Q6RYU9|Q6RYU9_9MONO Attachment glycoprotein OS=Human metapneu...    33   9.9  

>tr|B8LQ37|B8LQ37_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 337

 Score =  107 bits (268), Expect = 4e-22
 Identities = 54/137 (39%), Positives = 69/137 (50%)
 Frame = -2

Query: 580 KNGPRLGHEIPSSYKFWTLFVNMVGLLGPLIAYVGSKSGCFGAEPLLLSIAAMIVPYXXX 401
           K G     +IP SYKFW   +N+VG + P +A+  S SG       LLS A M+ PY   
Sbjct: 193 KKGKVSYFKIPFSYKFWNFLLNLVGFVIPCLAWAASYSGVIQPNVCLLSFATMLGPYLML 252

Query: 400 XXXXXXXXXXVWKWQSPVWLIVPLVYGCYSVXXXXXXXXXXXXXXXXLWTIEAVKRLISW 221
                     +W W+SPVWLIVP+VY  Y                   W +E +K L++W
Sbjct: 253 LSVQMLAEMLMWHWKSPVWLIVPVVYEAYRFLQLIRGLDLGIDLGAPTWLMEGMKGLVAW 312

Query: 220 WVYVISVQLMWIAWFVG 170
           WV V  +QLM IAWFVG
Sbjct: 313 WVLVFGMQLMRIAWFVG 329


>tr|Q7XM58|Q7XM58_ORYSJ OSJNBb0020O11.15 protein (Putative
           uncharacterized protein) OS=Oryza sativa subsp. japonica
           GN=OSJNBb0020O11.15 PE=4 SV=2
          Length = 511

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 45/136 (33%), Positives = 66/136 (48%)
 Frame = -2

Query: 577 NGPRLGHEIPSSYKFWTLFVNMVGLLGPLIAYVGSKSGCFGAEPLLLSIAAMIVPYXXXX 398
           N   L  +IP+SY+FW L  ++VG L PL  +  S  G        +  A ++ PY    
Sbjct: 180 NSSELIKQIPTSYRFWNLAASIVGFLVPLALFFASHKGTLQPHIPFIPFAVLLGPYLLLL 239

Query: 397 XXXXXXXXXVWKWQSPVWLIVPLVYGCYSVXXXXXXXXXXXXXXXXLWTIEAVKRLISWW 218
                     W W+SPVWL+ P+VY  Y V                 W +++++ L+SWW
Sbjct: 240 SVQVLTEMLTWHWKSPVWLVAPVVYEGYRVLQLMRGLQLADEITAPGWMVQSLRGLVSWW 299

Query: 217 VYVISVQLMWIAWFVG 170
           V V+ +QLM +AWF G
Sbjct: 300 VLVLGIQLMRVAWFAG 315


>tr|Q0JBF6|Q0JBF6_ORYSJ Os04g0534500 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0534500 PE=4 SV=1
          Length = 365

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 45/136 (33%), Positives = 66/136 (48%)
 Frame = -2

Query: 577 NGPRLGHEIPSSYKFWTLFVNMVGLLGPLIAYVGSKSGCFGAEPLLLSIAAMIVPYXXXX 398
           N   L  +IP+SY+FW L  ++VG L PL  +  S  G        +  A ++ PY    
Sbjct: 185 NSSELIKQIPTSYRFWNLAASIVGFLVPLALFFASHKGTLQPHIPFIPFAVLLGPYLLLL 244

Query: 397 XXXXXXXXXVWKWQSPVWLIVPLVYGCYSVXXXXXXXXXXXXXXXXLWTIEAVKRLISWW 218
                     W W+SPVWL+ P+VY  Y V                 W +++++ L+SWW
Sbjct: 245 SVQVLTEMLTWHWKSPVWLVAPVVYEGYRVLQLMRGLQLADEITAPGWMVQSLRGLVSWW 304

Query: 217 VYVISVQLMWIAWFVG 170
           V V+ +QLM +AWF G
Sbjct: 305 VLVLGIQLMRVAWFAG 320


>tr|Q01IH4|Q01IH4_ORYSA OSIGBa0159I10.11 protein OS=Oryza sativa
           GN=OSIGBa0159I10.11 PE=4 SV=1
          Length = 331

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 45/136 (33%), Positives = 66/136 (48%)
 Frame = -2

Query: 577 NGPRLGHEIPSSYKFWTLFVNMVGLLGPLIAYVGSKSGCFGAEPLLLSIAAMIVPYXXXX 398
           N   L  +IP+SY+FW L  ++VG L PL  +  S  G        +  A ++ PY    
Sbjct: 180 NSSELIKQIPTSYRFWNLAASIVGFLVPLALFFASHKGTLQPHIPFIPFAVLLGPYLLLL 239

Query: 397 XXXXXXXXXVWKWQSPVWLIVPLVYGCYSVXXXXXXXXXXXXXXXXLWTIEAVKRLISWW 218
                     W W+SPVWL+ P+VY  Y V                 W +++++ L+SWW
Sbjct: 240 SVQVLTEMLTWHWKSPVWLVAPVVYEGYRVLQLMRGLQLADEITAPGWMVQSLRGLVSWW 299

Query: 217 VYVISVQLMWIAWFVG 170
           V V+ +QLM +AWF G
Sbjct: 300 VLVLGIQLMRVAWFAG 315


>tr|Q9M201|Q9M201_ARATH Putative uncharacterized protein T8B10_250
           OS=Arabidopsis thaliana GN=T8B10_250 PE=4 SV=1
          Length = 329

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
 Frame = -2

Query: 550 PSSYKFWTLFVNMVGLLGPLIAYVGSKSGCFGA-EPLL--LSIAAMIVPYXXXXXXXXXX 380
           P SYKFW +F  ++G L P++   GS+SG   + +P +  LS A ++ PY          
Sbjct: 183 PFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLT 242

Query: 379 XXXVWKWQSPVWLIVPLVYGCYSVXXXXXXXXXXXXXXXXLWTIEAVKRLISWWVYVISV 200
               W WQSPVWL+ P+VY  Y +                +W +  ++ L+SWWV ++ +
Sbjct: 243 EILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGM 302

Query: 199 QLMWIAWFVG 170
           QLM +AWF G
Sbjct: 303 QLMRVAWFAG 312


>tr|Q8GUK3|Q8GUK3_ARATH Putative uncharacterized protein At3g60590
           (At3g60590) OS=Arabidopsis thaliana GN=At3g60590 PE=2
           SV=1
          Length = 166

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
 Frame = -2

Query: 550 PSSYKFWTLFVNMVGLLGPLIAYVGSKSGCFGA-EPLL--LSIAAMIVPYXXXXXXXXXX 380
           P SYKFW +F  ++G L P++   GS+SG   + +P +  LS A ++ PY          
Sbjct: 20  PFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLT 79

Query: 379 XXXVWKWQSPVWLIVPLVYGCYSVXXXXXXXXXXXXXXXXLWTIEAVKRLISWWVYVISV 200
               W WQSPVWL+ P+VY  Y +                +W +  ++ L+SWWV ++ +
Sbjct: 80  EILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGM 139

Query: 199 QLMWIAWFVG 170
           QLM +AWF G
Sbjct: 140 QLMRVAWFAG 149


>tr|Q3E7N7|Q3E7N7_ARATH Uncharacterized protein At3g60590.3
           OS=Arabidopsis thaliana GN=At3g60590 PE=4 SV=1
          Length = 404

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
 Frame = -2

Query: 550 PSSYKFWTLFVNMVGLLGPLIAYVGSKSGCFGA-EPLL--LSIAAMIVPYXXXXXXXXXX 380
           P SYKFW +F  ++G L P++   GS+SG   + +P +  LS A ++ PY          
Sbjct: 258 PFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASLQPQIPFLSSAVILFPYFILLAVQTLT 317

Query: 379 XXXVWKWQSPVWLIVPLVYGCYSVXXXXXXXXXXXXXXXXLWTIEAVKRLISWWVYVISV 200
               W WQSPVWL+ P+VY  Y +                +W +  ++ L+SWWV ++ +
Sbjct: 318 EILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLILGM 377

Query: 199 QLMWIAWFVG 170
           QLM +AWF G
Sbjct: 378 QLMRVAWFAG 387


>tr|A7PYF8|A7PYF8_VITVI Chromosome chr15 scaffold_37, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026422001
           PE=4 SV=1
          Length = 363

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 43/136 (31%), Positives = 65/136 (47%)
 Frame = -2

Query: 565 LGHEIPSSYKFWTLFVNMVGLLGPLIAYVGSKSGCFGAEPLLLSIAAMIVPYXXXXXXXX 386
           L  + P SY+FW +   + G + PLI + GS++G F  +   +  A ++ PY        
Sbjct: 216 LNSKAPFSYQFWNVVATITGFVVPLIVFFGSQNGFFQPQLPFIPFAVLMGPYLLLLSVQI 275

Query: 385 XXXXXVWKWQSPVWLIVPLVYGCYSVXXXXXXXXXXXXXXXXLWTIEAVKRLISWWVYVI 206
                 W WQSPVWL+ P+VY  Y V                 W +  V+ L+ WWV ++
Sbjct: 276 LTEMLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLGAELSAPAWMMHTVRGLVCWWVLIL 335

Query: 205 SVQLMWIAWFVGDMIG 158
            +Q+M +AWF G   G
Sbjct: 336 GMQVMRVAWFAGFTAG 351


>tr|A9PJH0|A9PJH0_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 332

 Score = 94.4 bits (233), Expect = 5e-18
 Identities = 41/127 (32%), Positives = 62/127 (48%)
 Frame = -2

Query: 550 PSSYKFWTLFVNMVGLLGPLIAYVGSKSGCFGAEPLLLSIAAMIVPYXXXXXXXXXXXXX 371
           P SYKFW +   + G + PL+A +GS+ G    +   +  A ++ PY             
Sbjct: 190 PLSYKFWNVVATVSGFVIPLMALLGSQKGTLLPQLPFIPFAVLLGPYMLLLSVQILTELL 249

Query: 370 VWKWQSPVWLIVPLVYGCYSVXXXXXXXXXXXXXXXXLWTIEAVKRLISWWVYVISVQLM 191
            W WQSPVWL+ P+VY  Y +                 W +  ++ L+SWW+ ++ VQLM
Sbjct: 250 TWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWWILILGVQLM 309

Query: 190 WIAWFVG 170
            +AWF G
Sbjct: 310 SVAWFAG 316


>tr|B6TV94|B6TV94_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 330

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 41/132 (31%), Positives = 63/132 (47%)
 Frame = -2

Query: 565 LGHEIPSSYKFWTLFVNMVGLLGPLIAYVGSKSGCFGAEPLLLSIAAMIVPYXXXXXXXX 386
           L  +IP SY+FW L   +VG + P   +  S+ G    +   +    ++ PY        
Sbjct: 182 LKRQIPISYRFWNLAATIVGFVVPFALFFASRRGTLQPQLPFVPFGVLLGPYLLLLSVQM 241

Query: 385 XXXXXVWKWQSPVWLIVPLVYGCYSVXXXXXXXXXXXXXXXXLWTIEAVKRLISWWVYVI 206
                 W W+SPVWL+ P+VY  Y V                 W +++++ L+SWWV V+
Sbjct: 242 LTEMLTWHWKSPVWLVAPVVYEGYRVLQLMRGLQLADEISAPDWMVQSLRGLVSWWVLVL 301

Query: 205 SVQLMWIAWFVG 170
            +QLM +AWF G
Sbjct: 302 GIQLMRVAWFTG 313