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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912930
Clone id YMU001_000024_E01
Library
Length 474
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAACGGTACGTAGAGATGGAAACAAACTTTTGCAAATAGATTCTACAAAGATTTGGACAG
ATGCAAGCGACACATTTGCTCTCCCCGAACATTGCAAGCAAGTGGTCTTTGTATCGGACC
CTCGAGAGAGACAATGGTGGTTTGTGGTTCAAGTTGATCCAAGAAATAAACAAGTATTTG
AAGGGAAAGATCTCCTGTAGGAAAGTCAGTCAAACGACGTCCATACTACTATGACATTAG
ATGATATGGACGAACATATGGCAGAGGAAGTTGACAGATATACGAGGGATGACGCAGACG
AACCAGAGTTGACATTTGTAGATGAAAATGCAATGGATGAAGACAATCTGCCAAAACGAG
TTGGAACAGAGTTATGTTTGCAATTAGAGATAAGACGATGATACGGTGCAAGATCTTATC
GATGATGCCTCACTCGTCGAGGCCTAGGCCTGTAAGTGTTAGTGTGAAGACGTT
■■Homology search results ■■ -
sp_hit_id Q4IR09
Definition sp|Q4IR09|RNA14_GIBZE mRNA 3'-end-processing protein RNA14 OS=Gibberella zeae
Align length 59
Score (bit) 33.9
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912930|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_E01.
         (474 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4IR09|RNA14_GIBZE mRNA 3'-end-processing protein RNA14 OS=Gi...    34   0.38 
sp|A6MMG6|YCF2_CHLSC Protein ycf2 OS=Chloranthus spicatus GN=ycf...    32   1.9  
sp|O94248|MDN1_SCHPO Midasin OS=Schizosaccharomyces pombe GN=mdn...    31   2.4  
sp|Q49Z74|RPOE_STAS1 Probable DNA-directed RNA polymerase subuni...    31   3.2  
sp|Q6DFV3|RHG21_MOUSE Rho GTPase-activating protein 21 OS=Mus mu...    30   4.2  
sp|A8FIE6|RPOE_BACP2 Probable DNA-directed RNA polymerase subuni...    30   5.4  
sp|Q1E5B0|CFT1_COCIM Protein CFT1 OS=Coccidioides immitis GN=CFT...    30   5.4  
sp|Q24270|CAC1D_DROME Voltage-dependent calcium channel type D s...    30   5.4  
sp|P38798|NMD2_YEAST Nonsense-mediated mRNA decay protein 2 OS=S...    30   7.1  
sp|Q05203|FLA_BACHD Flagellin OS=Bacillus halodurans GN=hag PE=1...    30   7.1  
sp|A0LDT5|TIG_MAGSM Trigger factor OS=Magnetococcus sp. (strain ...    29   9.3  
sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectiou...    29   9.3  
sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectio...    29   9.3  
sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectiou...    29   9.3  
sp|Q58CX7|CX036_BOVIN UPF0672 protein CXorf36 homolog OS=Bos tau...    29   9.3  
sp|Q4WJ38|YME2_ASPFU Mitochondrial escape protein 2 OS=Aspergill...    29   9.4  
sp|B0XPV4|YME2_ASPFC Mitochondrial escape protein 2 OS=Aspergill...    29   9.4  

>sp|Q4IR09|RNA14_GIBZE mRNA 3'-end-processing protein RNA14
           OS=Gibberella zeae GN=RNA14 PE=3 SV=1
          Length = 997

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = +3

Query: 240 DDMDEHMAEEVDRYTRDDADEPELTFVDENAMDEDNLPKRVGTELCLQLEIRR*YGARS 416
           D + E    E+    +  A +P  T ++EN  DEDN PKR  TE  + L I++ Y A +
Sbjct: 536 DKVKEREKLEISTLKQAAAQDPVQTSIEENDDDEDNTPKRSPTEERI-LAIQKGYAAET 593


>sp|A6MMG6|YCF2_CHLSC Protein ycf2 OS=Chloranthus spicatus GN=ycf2-A
            PE=3 SV=1
          Length = 2321

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 237  LDDMDEHMAEEVDRYTRDDADEPELTFVDENAMDED 344
            +DD DE   +++D    DD+DE ++  + E  MD+D
Sbjct: 1690 IDDSDEIDIDDIDEINMDDSDEIDIDDIGEINMDDD 1725


>sp|O94248|MDN1_SCHPO Midasin OS=Schizosaccharomyces pombe GN=mdn1
            PE=1 SV=1
          Length = 4717

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = +3

Query: 150  QVDPRNKQVFE-GKDLL*ESQSNDVHTTMTLDDMDEHMAEEVDRYTRDDADEPELTFVD- 323
            Q  P N+   +  +DL  + +  DV     L+DMD   A+E       + DEP   F D 
Sbjct: 4075 QPPPENEDHLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDFEDP 4134

Query: 324  ---ENAMDED 344
                N +DED
Sbjct: 4135 LEENNTLDED 4144


>sp|Q49Z74|RPOE_STAS1 Probable DNA-directed RNA polymerase subunit
           delta OS=Staphylococcus saprophyticus subsp.
           saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpoE
           PE=3 SV=1
          Length = 182

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +3

Query: 129 RQWWFVVQVDPRNKQVFEGKDLL*ESQSNDVHTTMT----LDDMDEHMAEEVDRYTRDDA 296
           R W+ V  ++ +     +  D+L +    D +  +      DD D+  A   D+ T +D 
Sbjct: 79  RDWYSVADIEEKIAPTIQKFDILDDDDEEDKNLKLLGEDEADDDDDIPAVTDDQETLNDP 138

Query: 297 DEPELTFVDENAMDED 344
           ++PE   VDE+  + D
Sbjct: 139 EDPEDDDVDEDLNETD 154


>sp|Q6DFV3|RHG21_MOUSE Rho GTPase-activating protein 21 OS=Mus
            musculus GN=Arhgap21 PE=1 SV=1
          Length = 1944

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +3

Query: 150  QVDPRNKQVFEGKDLL*ESQSNDVHTTMTLDDMDEHMAEEVDR----YTRDDADEPELTF 317
            +++PRN  +  G  L+  S+ N  H    + D  + +   +      +T + A+EP    
Sbjct: 1285 KMEPRNLAIVFGPTLVRTSEDNMTHMVTHMPDQYKIVETLIQHHDWFFTEEGAEEPLTAV 1344

Query: 318  VDENAMDEDNLP 353
             +EN +D   +P
Sbjct: 1345 QEENTVDSQPVP 1356


>sp|A8FIE6|RPOE_BACP2 Probable DNA-directed RNA polymerase subunit
           delta OS=Bacillus pumilus (strain SAFR-032) GN=rpoE PE=3
           SV=1
          Length = 179

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 231 MTLDDMDEHMAEEVDRYTRDD-ADEPELTFVDENAMDEDNLPK 356
           + LDD DE + EE++ +  DD  D+  LT +DE+ +D++   K
Sbjct: 138 LDLDD-DEEIEEEIEDFDEDDDEDDDGLTEIDEDDLDDNEEEK 179


>sp|Q1E5B0|CFT1_COCIM Protein CFT1 OS=Coccidioides immitis GN=CFT1
            PE=3 SV=1
          Length = 1387

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = +3

Query: 144  VVQVDPRNKQVFEGKDLL*ESQSNDVHTTMTLDDMDEHMAEEVDRYTRDDADEPELTFVD 323
            V++ DP +    +G  LL  S  +  H T T+  + EH +          AD+PE     
Sbjct: 1222 VLEYDPEDPTSSKGDRLLHRSSFHTGHFTSTMTLLPEHSSS-------PSADDPE----- 1269

Query: 324  ENAMDEDNLPK 356
            E+ MD D +PK
Sbjct: 1270 EDDMDVDYVPK 1280


>sp|Q24270|CAC1D_DROME Voltage-dependent calcium channel type D
            subunit alpha-1 OS=Drosophila melanogaster GN=Ca-alpha1D
            PE=1 SV=2
          Length = 2516

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 201  ESQSNDVHT-TMTLDDMDEHMAEEVDRYTRDDADEPELTFVDENAMDEDNLPKRVGTELC 377
            ES     H+ T T+D MD+H++ ++      D ++ EL   DE+ MD + L      E+C
Sbjct: 1236 ESAQKKSHSPTPTIDGMDDHLSIDI------DMEQQELD--DEDKMDHETLSDEEVREMC 1287

Query: 378  LQLE 389
             + E
Sbjct: 1288 EEEE 1291


>sp|P38798|NMD2_YEAST Nonsense-mediated mRNA decay protein 2
            OS=Saccharomyces cerevisiae GN=NMD2 PE=1 SV=2
          Length = 1089

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 180  EGKDLL*ESQSNDVHTTMTLDDMDEHMAEEVDRYTRDDADEPELTFVDENAMDED 344
            +G DLL E +  ++ T  T     +H A++ +    DD D+ E    D++  D+D
Sbjct: 854  DGVDLLGEDEDAEISTPNTESAPGKHQAKQDESEDEDDEDDDEDDDDDDDDDDDD 908


>sp|Q05203|FLA_BACHD Flagellin OS=Bacillus halodurans GN=hag PE=1
           SV=1
          Length = 272

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 26/112 (23%), Positives = 47/112 (41%)
 Frame = +3

Query: 6   VRRDGNKLLQIDSTKIWTDASDTFALPEHCKQVVFVSDPRERQWWFVVQVDPRNKQVFEG 185
           V  +  +L+++D TK+   A  T    E       ++D    Q   +  +D + K V EG
Sbjct: 147 VGANSGELIELDLTKVDLSAIHTALAAED------ITDHTNAQS-AIDAIDEQLKAVSEG 199

Query: 186 KDLL*ESQSNDVHTTMTLDDMDEHMAEEVDRYTRDDADEPELTFVDENAMDE 341
           +  L   Q+   HT   LD+  E++     R    D  +  + F   N +++
Sbjct: 200 RSYLGAMQNRLEHTIKNLDNASENLQAAESRIRDVDMAKEMMEFTRTNILNQ 251
tr_hit_id A3BXN8
Definition tr|A3BXN8|A3BXN8_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 110
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912930|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_E01.
         (474 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3BXN8|A3BXN8_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.64 
tr|A3BHU6|A3BHU6_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|A7TI95|A7TI95_VANPO Putative uncharacterized protein OS=Vande...    35   1.9  
tr|A8VUV4|A8VUV4_9BACI Outer membrane protein-like protein OS=Ba...    35   2.4  
tr|A5AXA7|A5AXA7_VITVI Putative uncharacterized protein OS=Vitis...    34   3.2  
tr|B3L0D0|B3L0D0_PLAKH Putative uncharacterized protein OS=Plasm...    34   4.2  
tr|A7GF30|A7GF30_CLOBL Putative uncharacterized protein OS=Clost...    33   7.1  
tr|B6GE61|B6GE61_9ACTN Putative uncharacterized protein OS=Colli...    33   7.1  
tr|B8BQP1|B8BQP1_THAPS 6-phosphofructokinase (Fragment) OS=Thala...    33   7.1  
tr|B4MYG9|B4MYG9_DROWI GK22219 OS=Drosophila willistoni GN=GK222...    33   7.1  
tr|Q7RSJ2|Q7RSJ2_PLAYO Putative uncharacterized protein PY00365 ...    33   9.3  
tr|B8NJR1|B8NJR1_ASPFL Nuclear pore complex protein Nup107, puta...    33   9.3  

>tr|A3BXN8|A3BXN8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_027810 PE=4 SV=1
          Length = 316

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
 Frame = +3

Query: 6   VRRDGNKLLQIDSTKIWTDASDTFALPEHCKQVVFVSDPRERQWWFVVQVDPRNKQVFEG 185
           V+ D ++   I++++      + + L    +QV +V D R+ +W+ VV+  PR+   F  
Sbjct: 156 VKEDKHRFTLINTSRT-VPIDEPYILATQAEQVYYVKDTRDPKWFVVVKTKPRDLYDFPP 214

Query: 186 KDLL*ESQSNDV----HTTMTLDDMDEHMAEEVDRYTRDDADEPELTFVD 323
            +   E + ND      ++      +EH+   ++  T DD D P +   D
Sbjct: 215 TE---EEEENDPTLSNKSSSEACQENEHITAALNYTTIDDGDFPTVLSKD 261


>tr|A3BHU6|A3BHU6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022618 PE=4 SV=1
          Length = 232

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +3

Query: 66  SDTFALPEHCKQVVFVSDPRERQWWFVVQVDPRNKQVFEGKDLL*ESQSNDV----HTTM 233
           +D + L    +QV +V D R+ +W+ VV+  PR+   F       E + ND      ++ 
Sbjct: 93  TDPYILATQAEQVYYVKDTRDPKWFVVVKTKPRDLYDFPPT----EEEENDPTLSNKSSS 148

Query: 234 TLDDMDEHMAEEVDRYTRDDADEPELTFVD 323
                +EH+   ++  T DD D P +   D
Sbjct: 149 EACQENEHITAALNYTTIDDGDFPTVLSKD 178


>tr|A7TI95|A7TI95_VANPO Putative uncharacterized protein
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=Kpol_1054p6 PE=4 SV=1
          Length = 654

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 201 ESQSNDVHTTMTLDDMDEHMAEEVDRYTRDDADEPELTFVDENAMDEDNLPKRVGT 368
           E Q + V ++ + DD+DE M+ + D   +DD +E +    +E   DED   K  G+
Sbjct: 39  EDQLDQVSSSGSDDDLDEIMSSDDDEVEKDDVEEDDDEEEEEEEGDEDKPSKEAGS 94


>tr|A8VUV4|A8VUV4_9BACI Outer membrane protein-like protein
            OS=Bacillus selenitireducens MLS10 GN=BselDRAFT_1916 PE=3
            SV=1
          Length = 3273

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
 Frame = +3

Query: 30   LQIDSTKIWTDASDTFALPEHCKQVVFVSDPRERQWWFVVQVDPRNKQVFEGKDLL*ESQ 209
            + +D TK+W D  DT A PE     ++ +D            +P +  V +G      S 
Sbjct: 2850 IDLDVTKVWLDGEDTSARPETITVDLYRNDNLN---------EPLDSIVLDG------SY 2894

Query: 210  SNDVHTTMTLDDMDEHMAEEV----DRYTRDDADEPELTFVDENAMDEDNL 350
            ++  HT   LD  DE   E V    +R   +  +  ++T  DEN     NL
Sbjct: 2895 NSWYHTFENLDRFDEDGVEYVYSVEEREILEGYELKDITLDDENLFTVTNL 2945


>tr|A5AXA7|A5AXA7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023303 PE=4 SV=1
          Length = 247

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 36  IDSTKIWTDASDTFALPEHCKQVVFVSDPRERQWWFVVQVDPRNKQVFEGKD 191
           ID +KI    SD+F L    KQV +V D  + +W  V+ + P++    EG D
Sbjct: 152 IDFSKIG-HRSDSFNLGSQAKQVFYVDDQLDPKWSIVLSIPPKDFNNMEGLD 202


>tr|B3L0D0|B3L0D0_PLAKH Putative uncharacterized protein OS=Plasmodium
            knowlesi (strain H) GN=PKH_031780 PE=4 SV=1
          Length = 971

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 201  ESQSNDVHTTMTL-DDMDEHMAEEVDRYTRDDADEP--ELTFVDENAMDEDNLPKRV 362
            E+Q N  H +  + DD D+H+  E DRY  ++AD P  + +       D DN  K++
Sbjct: 901  ENQGNGNHASKKIHDDSDQHVHTERDRYVYNEADTPSRKCSAQKNKTNDSDNWEKKM 957


>tr|A7GF30|A7GF30_CLOBL Putative uncharacterized protein
           OS=Clostridium botulinum (strain Langeland / NCTC 10281
           / Type F) GN=CLI_2135 PE=4 SV=1
          Length = 489

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +3

Query: 96  KQVVFVSDPRERQWWFVVQVDPRNKQVFEGKDLL*ESQSNDVHTTMTLDDMDEHMAEEVD 275
           K ++F+++ ++  WW    V+         ++    S +N+    +T D+   H  EE++
Sbjct: 230 KDIIFINNEKKSDWWVPEIVNKNRIPTVLKEEFQQNSANNNRFVMLTFDEFISHCGEELN 289

Query: 276 RYTRDDADEPE-LTFV-DENAMDEDNLPK 356
            + +   +  E ++F+ D N    DNL K
Sbjct: 290 IHPQSILEVTERISFIGDINKYFNDNLLK 318


>tr|B6GE61|B6GE61_9ACTN Putative uncharacterized protein
           OS=Collinsella stercoris DSM 13279 GN=COLSTE_02398 PE=4
           SV=1
          Length = 550

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +3

Query: 96  KQVVFVSDPRERQWWFVVQVDPRNKQVFEGKDLL*ESQSNDVHTTMTLDDMDEHMAEEVD 275
           +QV  ++ P  RQW     ++  N    E +D+L E   +D      LDDMDE  A+  +
Sbjct: 219 EQVEHMASPDLRQWMAENHLNLTNTSRLEPEDILDEEFFDD-----DLDDMDEEEADAYE 273

Query: 276 RYTRDDAD 299
            Y  D  D
Sbjct: 274 EYMADLMD 281


>tr|B8BQP1|B8BQP1_THAPS 6-phosphofructokinase (Fragment)
           OS=Thalassiosira pseudonana CCMP1335 GN=PFK1 PE=4 SV=1
          Length = 394

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +3

Query: 183 GKDLL*ESQSNDVHTTMTLDDMDEHMAEEVDRYTRDDADEPELTFVDENAMDEDNLPKRV 362
           G++LL ES   D      L  + E M + V+ Y R   +E  + ++D + M         
Sbjct: 251 GEELLGESTETDASGNKKLPQIGEFMKKAVNDYFRKQGEEATVKYIDPSYMIRSVPANAT 310

Query: 363 GTELCLQL 386
            T  C+QL
Sbjct: 311 DTLYCMQL 318


>tr|B4MYG9|B4MYG9_DROWI GK22219 OS=Drosophila willistoni GN=GK22219
            PE=4 SV=1
          Length = 1284

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 180  EGKDLL*ESQSNDVHTTMTLDDMDEHMAEEVDRYTRDDADEPELTFVDENAMDE 341
            E +DL+ E +  +    + L+D  E MAEE D  T+    E +L FV E  + +
Sbjct: 1005 EEQDLMTEQKKEEPKLDLDLNDFLEPMAEERDLMTQHKQQETQLNFVKEEKLTQ 1058