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NBDC - LSDB Archive
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BP912940
Clone id YMU001_000024_E12
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGTCGATTTTCCCACACTTCTGTTTGCACTTGGTGCTGAAACCTGCAATAGGGATGATCC
AAGTTGCAAGAAAAACAGCTGTTGCGATGAGAGACAACAGATGGGGCATTGGCATGGTGA
CAAGTTCCAAGATGAATGAAGTACAAGGAACTTGCAGAGTTTACATGCGGTTGATCGATT
GAGAGCTATACTGGATGTAGGCAGCTGCTCTGTCCAGGATGCACACTCGCTTGTCTGAAT
TGAGCACCTGTTTGAGTGTGTTCTTACACTAGTTGATGCGGCATAGCCATGATCACAAGC
TCCAGGATCGAATGAGGCATAAGCACTTGCGGTATACACAAGTAGTCGCCTGCTGATAGC
TTTCCAGTACAATGAGGATTGCACTGTCTTAGTAGACCATCTTTGTTGAGCCTGTGACAA
TCTCGCAGGAAGGGCGATTGTAGATGATAATCATCTTGCTGTGCAGATGAAGCCCCTCTC
TGTTTGCGTGTCAACACACAAGAGGTGAGATATGGACAC
■■Homology search results ■■ -
sp_hit_id P13896
Definition sp|P13896|POLN_WEEV Non-structural polyprotein OS=Western equine encephalitis virus
Align length 40
Score (bit) 32.7
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912940|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_E12.
         (519 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P13896|POLN_WEEV Non-structural polyprotein OS=Western equine...    33   1.0  
sp|Q7ZTY6|CG026_DANRE Uncharacterized protein C7orf26 homolog OS...    32   1.4  
sp|Q7Q5R7|CTLH1_ANOGA CTL-like protein 1 OS=Anopheles gambiae GN...    31   3.0  
sp|P40954|CHI3_CANAL Chitinase 3 OS=Candida albicans GN=CHT3 PE=...    31   4.0  
sp|Q70IB2|RNS10_BOVIN Ribonuclease-like protein 10 (Fragment) OS...    30   5.2  
sp|Q17JQ7|CTLH1_AEDAE CTL-like protein 1 OS=Aedes aegypti GN=AAE...    30   6.8  
sp|Q9SZW4|AHM3_ARATH Putative cadmium/zinc-transporting ATPase 3...    30   8.8  
sp|O74851|ADG3_SCHPO Protein adg3 OS=Schizosaccharomyces pombe G...    30   9.0  

>sp|P13896|POLN_WEEV Non-structural polyprotein OS=Western equine
           encephalitis virus PE=2 SV=2
          Length = 2466

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 170 VDRLRAILDVGSCSVQDAHSLV*IEHLFECVLTLVDAA*P 289
           VDR + ILD+GS  V+ AHS     H + C+  ++ A  P
Sbjct: 55  VDRDQVILDIGSAPVRHAHS----NHRYHCICPMISAEDP 90


>sp|Q7ZTY6|CG026_DANRE Uncharacterized protein C7orf26 homolog
           OS=Danio rerio GN=zgc:56409 PE=2 SV=2
          Length = 475

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
 Frame = -2

Query: 359 LSAGDYLCIPQVL------MPHSILELVIMAMPHQLV*EHTQTGAQFRQASVHPGQSSCL 198
           ++ G  LC  + L      +PH+ L  ++M+ P      H+          +HPG+ S L
Sbjct: 354 MATGALLCAREDLRALCSRLPHNNLLQLVMSGPVVQPPPHSSPFQPNMYPHIHPGRPSPL 413

Query: 197 HPV*LSIDQPHVNSASSLYFIHLGTCHHANAPSVVSHR 84
            P       PH ++ SS +  H     H   P++  HR
Sbjct: 414 SP-----HSPHQSTLSSPHSPHTVLTAHPTHPALAPHR 446


>sp|Q7Q5R7|CTLH1_ANOGA CTL-like protein 1 OS=Anopheles gambiae
           GN=AGAP006244 PE=3 SV=4
          Length = 690

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -3

Query: 223 CILDRAAAYIQYSSQSINRM*TLQVPCTSFILELVTMPMPHLLSLIATAVFLATWIIPIA 44
           CI+      I Y  + +  +  L       +L+L  +  P LL+ +A +VFLA W++ + 
Sbjct: 293 CIMIILLVVIYYLREKLTGLAALFEEAGKCMLQLPGLAGPPLLAFLALSVFLAFWVVVVV 352

Query: 43  GFST 32
             +T
Sbjct: 353 CLAT 356


>sp|P40954|CHI3_CANAL Chitinase 3 OS=Candida albicans GN=CHT3 PE=3
           SV=2
          Length = 567

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 25/76 (32%), Positives = 32/76 (42%)
 Frame = -1

Query: 396 STKTVQSSLYWKAISRRLLVYTASAYASFDPGACDHGYAASTSVRTHSNRCSIQTSECAS 217
           ST    SS   K         T+S+ +S          ++STS  T S   S  TS   S
Sbjct: 332 STTISSSSSSSKTSKTSTTSTTSSSISSTTSSTTSSTSSSSTSSSTSSTTSSSTTSSQIS 391

Query: 216 WTEQLPTSSIALNRST 169
            T   PTSS +L+ ST
Sbjct: 392 TTSTAPTSSTSLSSST 407


>sp|Q70IB2|RNS10_BOVIN Ribonuclease-like protein 10 (Fragment)
           OS=Bos taurus GN=RNASE10 PE=2 SV=1
          Length = 162

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 410 LNKDGLLRQCNPHCTGKLSAGDYLCIPQVLMPHSILELV 294
           L  D + R+CN     K+ + D+ CIPQ +  H  L+ V
Sbjct: 107 LRSDVMDRECNALMALKVKSKDHTCIPQYIFIHEELDAV 145


>sp|Q17JQ7|CTLH1_AEDAE CTL-like protein 1 OS=Aedes aegypti
           GN=AAEL001935 PE=3 SV=1
          Length = 689

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -3

Query: 223 CILDRAAAYIQYSSQSINRM*TLQVPCTSFILELVTMPMPHLLSLIATAVFLATWIIPIA 44
           CI+      I Y  + ++ +  L       +L++  +  P +L+ IA AVFL+ W++ I 
Sbjct: 292 CIMIILLVVIYYLREKLSGLAALFEEAGKCMLQIPGLAGPPVLAFIALAVFLSFWMVVIV 351

Query: 43  GFST 32
             +T
Sbjct: 352 CLAT 355


>sp|Q9SZW4|AHM3_ARATH Putative cadmium/zinc-transporting ATPase 3
           OS=Arabidopsis thaliana GN=HMA2 PE=2 SV=1
          Length = 951

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = +2

Query: 38  ETCNRDDPSCKKNSCCDERQQMGHWH-----GDKFQDE*STRNLQSLHAVDRLRAILDVG 202
           ET  +D+ +  K SCC E   +GH H     GDK Q       +Q   +     + LD G
Sbjct: 770 ETKQKDNVTVVKKSCCAEPVDLGHGHDSGCCGDKSQQP-HQHEVQVQQSCHNKPSGLDSG 828

Query: 203 SC 208
            C
Sbjct: 829 CC 830


>sp|O74851|ADG3_SCHPO Protein adg3 OS=Schizosaccharomyces pombe
           GN=adg3 PE=2 SV=1
          Length = 1131

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 24/94 (25%), Positives = 45/94 (47%)
 Frame = -1

Query: 447 SSTIALPARLSQAQQRWSTKTVQSSLYWKAISRRLLVYTASAYASFDPGACDHGYAASTS 268
           S+ +   +  S A +   T    SS  + + S   +  ++S YAS       +  ++STS
Sbjct: 483 STPVTSSSIFSTATEATDTSVQTSSAIYDSSSTSNIQSSSSVYASSTGALSSNSLSSSTS 542

Query: 267 VRTHSNRCSIQTSECASWTEQLPTSSIALNRSTA 166
             + S   +  +S  AS TE L ++S++ + S+A
Sbjct: 543 SVSTSYIPNASSSVYASSTEALSSNSLSSSTSSA 576
tr_hit_id Q6BXK5
Definition tr|Q6BXK5|Q6BXK5_DEBHA DEHA2B02222p OS=Debaryomyces hansenii
Align length 114
Score (bit) 35.8
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912940|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_E12.
         (519 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6BXK5|Q6BXK5_DEBHA DEHA2B02222p OS=Debaryomyces hansenii GN=...    36   1.3  
tr|Q1KUQ4|Q1KUQ4_9ROSI Putative uncharacterized protein OS=Cleom...    27   3.2  
tr|Q9LFV8|Q9LFV8_ARATH Putative uncharacterized protein F14F8_60...    27   4.0  
tr|A8WVW4|A8WVW4_CAEBR Putative uncharacterized protein OS=Caeno...    33   6.5  
tr|A4I523|A4I523_LEIIN Putative uncharacterized protein OS=Leish...    33   6.5  
tr|Q558W6|Q558W6_DICDI Putative uncharacterized protein OS=Dicty...    33   6.5  
tr|Q4Q7T0|Q4Q7T0_LEIMA Putative uncharacterized protein OS=Leish...    33   8.5  
tr|A4HHX3|A4HHX3_LEIBR Putative uncharacterized protein OS=Leish...    33   8.5  
tr|O10412|O10412_9VIRU Nonstructural protein 1 (Fragment) OS=For...    33   8.5  
tr|O10391|O10391_9VIRU Nonstructural protein 1 (Fragment) OS=Bug...    33   8.5  

>tr|Q6BXK5|Q6BXK5_DEBHA DEHA2B02222p OS=Debaryomyces hansenii
           GN=DEHA2B02222g PE=4 SV=2
          Length = 703

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
 Frame = -1

Query: 447 SSTIALPARLSQAQQRWSTKTVQSS---LYWKAISRRLLVYTASAYASFDPGACDHGYAA 277
           SS++AL + L+ +    ++ +V SS       +++  L   T+S+ AS  P A      +
Sbjct: 233 SSSVALSSSLTTSSCSTTSSSVASSSSVALSSSLTTSLCSTTSSSGASSSPVALSSSVVS 292

Query: 276 STSVRTHSNRCSIQTSECASWTEQLPTSSIALNRSTACKLCKFLVLHSSWNLSP 115
            +SV T S  CS  +S   + +  L TSS ++  S++  L   L   SS  +SP
Sbjct: 293 PSSVVTSS--CSTSSSSSIALSSLLTTSSSSVASSSSVDLSSSLTTSSSSVVSP 344


>tr|Q1KUQ4|Q1KUQ4_9ROSI Putative uncharacterized protein OS=Cleome
           spinosa PE=4 SV=1
          Length = 1527

 Score = 26.9 bits (58), Expect(2) = 3.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 512 YLTSCVLTRKQRGASSAQQDDYHLQSPFLR 423
           ++ SC    K  G+ +A +D YHL  P+LR
Sbjct: 797 FVCSCPPDGKDAGSIAATRDMYHLIFPYLR 826



 Score = 26.2 bits (56), Expect(2) = 3.2
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 303 GACDHGYAASTSV-RTHSNRCSIQTSECASWTEQLPTSSIALNRSTACKLCK 151
           G+  H +AA+ ++ R+H   C I  SE +S+ +++ + + A ++    K C+
Sbjct: 828 GSEAHNHAATMALGRSHLEACEIMFSELSSFMDEVSSETEAKSKWKIQKGCR 879


>tr|Q9LFV8|Q9LFV8_ARATH Putative uncharacterized protein F14F8_60
           OS=Arabidopsis thaliana GN=F14F8_60 PE=4 SV=1
          Length = 2163

 Score = 26.9 bits (58), Expect(2) = 4.0
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 303 GACDHGYAASTSV-RTHSNRCSIQTSECASWTEQLPTSS 190
           G+  H +AA+ ++ R+H   C I  SE AS+ E++ + +
Sbjct: 838 GSETHNHAATMALGRSHLEACEIMFSELASFMEEISSET 876



 Score = 25.8 bits (55), Expect(2) = 4.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 512 YLTSCVLTRKQRGASSAQQDDYHLQSPFLR 423
           ++ SC    K  G+ ++ +D YHL  P+LR
Sbjct: 807 FVCSCPPDGKDAGSIASTRDMYHLIFPYLR 836


>tr|A8WVW4|A8WVW4_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG03978 PE=4 SV=2
          Length = 691

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -1

Query: 396 STKTVQSSLYWKAISRRLLVYTASAYASFDPGACDHGYAASTSVRTHSNRCSIQ---TSE 226
           ++ T      W + +  L   T S + +   G C H  A ++   T SNRCS +   T+ 
Sbjct: 388 ASSTTSVDTKWTSTTNALSNATGSEFPAASTGTCQHYDAPASEYPTASNRCSNRYSYTTA 447

Query: 225 CASWTEQLPTS 193
             SW E   T+
Sbjct: 448 ITSWQELKETN 458


>tr|A4I523|A4I523_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ30.0280 PE=4 SV=1
          Length = 1523

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
 Frame = -1

Query: 444 STIALPARLSQAQQRWSTKTVQSSLYWKA---ISRRLLVYTASAYASFDPGACDHGYAAS 274
           ST++LP R + A+    ++ +  +++ +A    + +  +YT S  AS     C  G AA 
Sbjct: 493 STVSLPTRSTDARASAPSEPIYWTMFQQASTSFTSQTSLYTPSVVASVPKEPCAAGSAAR 552

Query: 273 TSVRTHSNRCSIQ------------TSECASWTEQLPTSSIALNRSTACKLCKFLVLHSS 130
            ++ T SNR + +             + CA+ T   P ++       AC+ C        
Sbjct: 553 RALGTASNRAATKEARHGVLVGSQAAATCAAGTYANPDTA-------ACEACPSACSALL 605

Query: 129 WNLSPCQCP 103
              +P  CP
Sbjct: 606 TAATPVYCP 614


>tr|Q558W6|Q558W6_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0217083 PE=4 SV=1
          Length = 657

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 161 NSASSLYFIHLGTCHHANAPSVVSHRNSCFSCNLDHPYC 45
           N  S L+F      ++ N P++ +H++ C  CN D P C
Sbjct: 67  NPNSGLFFNFKANINNDNYPTICAHKSICLICNKDSPPC 105


>tr|Q4Q7T0|Q4Q7T0_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF30.0290 PE=4 SV=1
          Length = 1520

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
 Frame = -1

Query: 444 STIALPARLSQAQQRWSTKTVQSSLYWKA---ISRRLLVYTASAYASFDPGACDHGYAAS 274
           ST+ LP R + A+    +++++ +++ +A    + +  +YT S  AS     C  G AA 
Sbjct: 493 STVLLPTRSADAKASAPSESIRWTMFQQASTSFTSQTSLYTPSVVASVPKEPCAAGSAAR 552

Query: 273 TSVRTHSNRCSIQTSE-----CASWTEQLPTSSIALNRSTACKLCKFLVLHSSWNLSPCQ 109
            +  T SNR + + +       +   E     + A   + AC+ C           +P  
Sbjct: 553 RAPGTASNRAASKEARHGVLVGSHAAETCAAGTYAKPDTAACRACPSACSALLKAATPVY 612

Query: 108 CP 103
           CP
Sbjct: 613 CP 614


>tr|A4HHX3|A4HHX3_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM30_V2.0300 PE=4 SV=1
          Length = 1577

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 5/116 (4%)
 Frame = -1

Query: 435 ALPARLSQAQQRWSTKTVQSSLYWKAISRRLLVYTASAYASFDPGACDHGYAASTSVRTH 256
           A PA  +  Q  +   T+          +R L YT S  AS     C  G+AA  ++ T 
Sbjct: 554 AFPAAKASLQHEFIHWTMFQQASTSFTGQRSL-YTPSIVASAPMNPCAAGHAADAALHTG 612

Query: 255 SNRCSIQTSE-----CASWTEQLPTSSIALNRSTACKLCKFLVLHSSWNLSPCQCP 103
            NR +           A   E  P  + A   +  C++C  L   S    +P  CP
Sbjct: 613 LNRAASSEDRHRVLVGAQVAETCPAGTYAKPDTATCEVCPSLCSASPTVPTPVYCP 668


>tr|O10412|O10412_9VIRU Nonstructural protein 1 (Fragment) OS=Fort
           Morgan virus GN=nsP1 PE=4 SV=1
          Length = 125

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 170 VDRLRAILDVGSCSVQDAHSLV*IEHLFECVLTLVDAA*P 289
           VDR + ILD+GS  V+ AHS     H + CV  ++ A  P
Sbjct: 7   VDREQVILDIGSAPVRHAHS----SHNYHCVCPMISAEDP 42


>tr|O10391|O10391_9VIRU Nonstructural protein 1 (Fragment) OS=Buggy
           Creek virus GN=nsP1 PE=4 SV=1
          Length = 125

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 170 VDRLRAILDVGSCSVQDAHSLV*IEHLFECVLTLVDAA*P 289
           VDR + ILD+GS  V+ AHS     H + CV  ++ A  P
Sbjct: 7   VDREQVILDIGSAPVRHAHS----SHNYHCVCPMISAEDP 42