BP912952
Clone id YMU001_000024_G02
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACCCACCACAAGAAGTCAATACATCAGGGGTAATGTGTTCAAGTATGAAAAGGTTCTAGA
AACAAACATAAGAAAGCTGATAAAGGTCAGTGTGATATGTCCCCAGCAGCGAGGGCAAGG
TGCAAGGATTGCCGAAGAGACATCTTAAAGTAGGGGAAAGGGTCCAGATCAATGTGGTCG
AACATGCGGGAGTTGCGTTGGCACCAAATACTCCAGAAGGCCCAATATCGGACCCATACG
AAGAAAGTAGCGAAAGGCCAGCGGCATGAATTCAAAAAGCCAGAATTTCTTCCCAAAGAC
CGCTACGGGAAAACGGAGACACATGAGTGTAGAAACCCAAGCAATAAAGACTCGAGTATA
GCGACAATCCCATAGCAAGTGCTGAACAGATTCTTCGGAAGCAGAGCTATGAACGCAACA
TGAGGGGCTGATCCGACGCTTTTGCAGAAAAGAACCAATCGGCAGGATACCCATCAAGCA
ACGCCACAAAAATAGACG
■■Homology search results ■■ -
sp_hit_id O14594
Definition sp|O14594|NCAN_HUMAN Neurocan core protein OS=Homo sapiens
Align length 67
Score (bit) 30.4
E-value 4.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912952|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_G02.
(498 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O14594|NCAN_HUMAN Neurocan core protein OS=Homo sapiens GN=NC... 30 4.7
sp|Q5IS41|NCAN_PANTR Neurocan core protein OS=Pan troglodytes GN... 30 6.1
sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio r... 30 6.3
sp|Q8TCG5|CPT1C_HUMAN Carnitine O-palmitoyltransferase 1, brain ... 30 8.2

>sp|O14594|NCAN_HUMAN Neurocan core protein OS=Homo sapiens GN=NCAN
PE=2 SV=3
Length = 1321

Score = 30.4 bits (67), Expect = 4.7
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = +3

Query: 102 PSSEGKVQGLPKRHLKVGERVQINVVEHAGVALAPNTPEGPISDPYEESSERPAA*IQKA 281
P++E KV LP G+ G P TPE P +D + E+ E A + KA
Sbjct: 671 PAAETKVYSLPLSLTPTGQ----------GGEAMPTTPESPRAD-FRETGETSPAQVNKA 719

Query: 282 RISSQRP 302
SS P
Sbjct: 720 EHSSSSP 726


>sp|Q5IS41|NCAN_PANTR Neurocan core protein OS=Pan troglodytes
GN=NCAN PE=2 SV=1
Length = 1321

Score = 30.0 bits (66), Expect = 6.1
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = +3

Query: 102 PSSEGKVQGLPKRHLKVGERVQINVVEHAGVALAPNTPEGPISDPYEESSERPAA*IQKA 281
P++E KV LP G+ G P TPE P +D + E+ E A + KA
Sbjct: 671 PAAETKVYSLPLSLTPTGQ----------GGEAMPTTPESPGAD-FRETGETSPAQVNKA 719

Query: 282 RISSQRP 302
SS P
Sbjct: 720 EHSSSSP 726


>sp|Q9YHE8|T7L1A_DANRE Transcription factor 7-like 1-A OS=Danio
rerio GN=tcf7l1a PE=2 SV=1
Length = 560

Score = 30.0 bits (66), Expect = 6.3
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1

Query: 196 RWHQILQKAQYRTHTKKVAKGQRHEFKKPEFLPKDRYGKTE--THECRNPSNKDSSIATI 369
RWH + ++ Q + + + Q H P + +D YGK + +C++ S +S+ +
Sbjct: 366 RWHSLSREEQAKYYELARKERQLHSQLYPGWSARDNYGKRKKRKRDCKSDSPSESNFSPQ 425

Query: 370 P 372
P
Sbjct: 426 P 426


>sp|Q8TCG5|CPT1C_HUMAN Carnitine O-palmitoyltransferase 1, brain
isoform OS=Homo sapiens GN=CPT1C PE=2 SV=1
Length = 803

Score = 29.6 bits (65), Expect = 8.2
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1

Query: 282 WLFEFMPLAFRYFLRMGPILGLLEYLVPTQLPHVRPH*SGPFPLL*DV-SSAILAPCPRC 106
WLF F + +FL++ P LGL+E ++ + P G L V ++A+ A C
Sbjct: 62 WLFLFSAIQLAWFLQLDPSLGLME-----KIKELLPDWGGQHHGLRGVLAAALFASC--L 114

Query: 105 WGHITLT 85
WG + T
Sbjct: 115 WGALIFT 121


tr_hit_id Q9SZD8
Definition tr|Q9SZD8|Q9SZD8_ARATH Putative uncharacterized protein F19B15.120 (Putative reverse transcriptase/RNA-dependent DNA polymerase) (Putative uncharacterized protein AT4g29090) OS=Arabidopsis thaliana
Align length 76
Score (bit) 45.1
E-value 0.002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912952|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_G02.
(498 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9SZD8|Q9SZD8_ARATH Putative uncharacterized protein F19B15.1... 45 0.002
tr|Q9C697|Q9C697_ARATH Reverse transcriptase, putative; 16838-20... 42 0.012
tr|Q9SJ38|Q9SJ38_ARATH Putative non-LTR retroelement reverse tra... 42 0.021
tr|O64712|O64712_ARATH Putative reverse transcriptase OS=Arabido... 40 0.061
tr|A1ZDY9|A1ZDY9_9SPHI SprA OS=Microscilla marina ATCC 23134 GN=... 40 0.079
tr|Q7XJS2|Q7XJS2_ARATH Putative non-LTR retroelement reverse tra... 38 0.23
tr|Q9SIS9|Q9SIS9_ARATH Putative non-LTR retroelement reverse tra... 38 0.30
tr|O22148|O22148_ARATH Putative non-LTR retroelement reverse tra... 38 0.30
tr|Q01N39|Q01N39_ORYSA H0215A08.3 protein OS=Oryza sativa GN=H02... 31 0.49
tr|Q9SK98|Q9SK98_ARATH Very similar to retrotransposon reverse t... 37 0.52
tr|Q2HVU8|Q2HVU8_MEDTR Polynucleotidyl transferase, Ribonuclease... 37 0.52
tr|O80591|O80591_ARATH T27I1.2 protein OS=Arabidopsis thaliana G... 37 0.52
tr|A2Q2E7|A2Q2E7_MEDTR Polynucleotidyl transferase, Ribonuclease... 37 0.52
tr|Q9SZ87|Q9SZ87_ARATH RNA-directed DNA polymerase-like protein ... 37 0.67
tr|Q9FJA4|Q9FJA4_ARATH Non-LTR retroelement reverse transcriptas... 37 0.67
tr|Q9C7N6|Q9C7N6_ARATH Reverse transcriptase, putative; 100033-1... 37 0.67
tr|A5B0A4|A5B0A4_VITVI Putative uncharacterized protein OS=Vitis... 33 1.0
tr|A5C8M0|A5C8M0_VITVI Putative uncharacterized protein OS=Vitis... 35 1.1
tr|Q9LSE9|Q9LSE9_ARATH Reverse transcriptase-like protein OS=Ara... 36 1.1
tr|B7PEG6|B7PEG6_IXOSC Putative uncharacterized protein OS=Ixode... 36 1.2
tr|A5AED3|A5AED3_VITVI Putative uncharacterized protein OS=Vitis... 32 1.4
tr|A3BEP0|A3BEP0_ORYSJ Putative uncharacterized protein OS=Oryza... 33 1.5
tr|A2Q3D2|A2Q3D2_MEDTR Putative non-LTR retroelement reverse tra... 35 1.5
tr|Q9ZVH1|Q9ZVH1_ARATH T2P11.5 protein OS=Arabidopsis thaliana G... 35 2.0
tr|A2Q2Z7|A2Q2Z7_MEDTR Contains similarity to reverse trancripta... 35 2.0
tr|Q9ZQF8|Q9ZQF8_ARATH Putative non-LTR retroelement reverse tra... 35 2.6
tr|Q9SHP2|Q9SHP2_ARATH Putative non-LTR retroelement reverse tra... 35 2.6
tr|Q7X7T7|Q7X7T7_ORYSJ OSJNBa0084K20.4 protein (OSJNBa0076N16.2 ... 28 2.6
tr|Q1SMZ7|Q1SMZ7_MEDTR Ribonuclease H OS=Medicago truncatula GN=... 34 3.3
tr|A5B8I6|A5B8I6_VITVI Putative uncharacterized protein OS=Vitis... 28 3.8

>tr|Q9SZD8|Q9SZD8_ARATH Putative uncharacterized protein F19B15.120
(Putative reverse transcriptase/RNA-dependent DNA
polymerase) (Putative uncharacterized protein AT4g29090)
OS=Arabidopsis thaliana GN=F19B15.120 PE=2 SV=1
Length = 575

Score = 45.1 bits (105), Expect = 0.002
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = -1

Query: 492 FLWRCLMGILPIGSFLQKRRISP-SCCVHSSASEESVQHLLWDCRYTRVFIAWVSTLMCL 316
FLW+CL LP+ L R +S S C+ + +E+V HLL+ C + R+ A S + L
Sbjct: 269 FLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPL 328

Query: 315 --RFPVAVFGKKFWLF 274
+ +++ +W+F
Sbjct: 329 GGEWADSIYVNLYWVF 344


>tr|Q9C697|Q9C697_ARATH Reverse transcriptase, putative; 16838-20266
OS=Arabidopsis thaliana GN=T6B12.3 PE=4 SV=1
Length = 1142

Score = 42.4 bits (98), Expect = 0.012
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1

Query: 498 RLFLWRCLMGILPIGSFLQKRRI-SPSCCVHSSASEESVQHLLWDCRYTR 352
R FLW+ L G +P+ L+KR I CV ASEES+ H L+ C R
Sbjct: 838 RHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPAR 887



Score = 34.7 bits (78), Expect = 2.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -2

Query: 224 WAFWSIWCQRNSRMFDHIDLDPFPYFKMSLRQS 126
W W IW RN ++F+++D DP ++++++
Sbjct: 929 WIIWYIWKARNEKVFENVDKDPMEILLLAVKEA 961


>tr|Q9SJ38|Q9SJ38_ARATH Putative non-LTR retroelement reverse
transcriptase OS=Arabidopsis thaliana GN=At2g05200 PE=2
SV=1
Length = 1229

Score = 41.6 bits (96), Expect = 0.021
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1

Query: 489 LWRCLMGILPIGSFLQKRRISPSCCVHSSASEESVQHLLWDCRY 358
+W+ M LP+G L +R ISPS H + ES HL + C +
Sbjct: 947 MWKAAMEALPVGIQLVRRHISPSAACHRCGAPESTTHLFFHCEF 990


>tr|O64712|O64712_ARATH Putative reverse transcriptase
OS=Arabidopsis thaliana GN=At2g02650 PE=2 SV=1
Length = 365

Score = 40.0 bits (92), Expect = 0.061
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1

Query: 492 FLWRCLMGILPIGSFLQKRRI-SPSCCVHSSASEESVQHLLWDCRYTR 352
FLWRC+ G L + L+ R I + C EE++ H++++C YT+
Sbjct: 49 FLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96


>tr|A1ZDY9|A1ZDY9_9SPHI SprA OS=Microscilla marina ATCC 23134
GN=M23134_04130 PE=4 SV=1
Length = 2420

Score = 39.7 bits (91), Expect = 0.079
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Frame = +1

Query: 169 SMWSNMRELRWHQILQKAQYRTHTKKVAKGQRHE-FKKPEFLPKDRYGK---TETHECR- 333
S+W M+ Q+++ T + K K + + FK P F+PKDRYG + H+ R
Sbjct: 46 SVWQQMKVA-----YQRSRSDTDSTKTKKPEPYNRFKPPVFVPKDRYGDPIISNGHKSRL 100

Query: 334 ---NPSNKDSSIATIP*QVLNRFFGSRAMNAT*GADPTLL 444
PSN ++I +P NRF + T PT+L
Sbjct: 101 IYGAPSNLKTTIKLLPDSAGNRFVVDENLGKTSYRPPTVL 140


>tr|Q7XJS2|Q7XJS2_ARATH Putative non-LTR retroelement reverse
transcriptase OS=Arabidopsis thaliana GN=At2g17910 PE=2
SV=1
Length = 1344

Score = 38.1 bits (87), Expect = 0.23
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1

Query: 498 RLFLWRCLMGILPIGSFLQKRRI-SPSCCVHSSASEESVQHLLWDCRYTR 352
R+FLW+ L G +P+ L+ R I S C+ E++ H+L++C R
Sbjct: 1034 RIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLAR 1083


>tr|Q9SIS9|Q9SIS9_ARATH Putative non-LTR retroelement reverse
transcriptase OS=Arabidopsis thaliana GN=At2g01840 PE=2
SV=1
Length = 1715

Score = 37.7 bits (86), Expect = 0.30
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1

Query: 492 FLWRCLMGILPIGSFLQKRRI-SPSCCVHSSASEESVQHLLWDCRYTRV 349
F+WRCL G L + L+ R I + C ++E++ H+++ C Y +V
Sbjct: 1400 FIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQV 1448


>tr|O22148|O22148_ARATH Putative non-LTR retroelement reverse
transcriptase OS=Arabidopsis thaliana GN=At2g45230 PE=2
SV=1
Length = 1374

Score = 37.7 bits (86), Expect = 0.30
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1

Query: 492 FLWRCLMGILPIGSFLQKRRIS-PSCCVHSSASEESVQHLLWDCRYTRV 349
FLWRC+ L + S L R ++ CV + E+V HLL+ C + R+
Sbjct: 1066 FLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARL 1114


>tr|Q01N39|Q01N39_ORYSA H0215A08.3 protein OS=Oryza sativa
GN=H0215A08.3 PE=4 SV=1
Length = 1186

Score = 30.8 bits (68), Expect(2) = 0.49
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -1

Query: 498 RLFLWRCLMGILPIGSFLQKRRIS-PSCCVHSSASEESVQHLLWDCRYTRVFIAWVSTLM 322
R FLW M L+ R + P CV EES+ H+L C +R W TL
Sbjct: 1034 RFFLWLVAMNKCWTADRLRSRGLPHPDRCVLCDQQEESIDHILVGCPESRQL--WWWTLR 1091

Query: 321 CLRFP 307
L P
Sbjct: 1092 ALVIP 1096



Score = 25.4 bits (54), Expect(2) = 0.49
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2

Query: 215 WSIWCQRNSRMFD 177
WSIW +RN+R+F+
Sbjct: 1134 WSIWKERNNRIFN 1146


>tr|Q9SK98|Q9SK98_ARATH Very similar to retrotransposon reverse
transcriptase OS=Arabidopsis thaliana GN=F12K8.9 PE=4
SV=1
Length = 1231

Score = 37.0 bits (84), Expect = 0.52
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1

Query: 498 RLFLWRCLMGILPIGSFLQKRRIS-PSCCVHSSASEESVQHLLWDCRYTR 352
++FLW+ L G +P+ L R + S C ES+QH+L+ C + R
Sbjct: 904 KVFLWKVLSGAIPVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPR 953