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NBDC - LSDB Archive
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BP912958
Clone id YMU001_000024_G08
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGACTGCATACATCATTTTAGAGATGGAGCTTGCTCCTGTGAAGATAGAGACTATGTAAA
TAGTACATGTAAGAATCACATATTGACAAGGAAGTAAAGAGTCTTTTGGGGTATCATGAA
AGATCTCAAGCTCCCTTGAATAGTGCACCGGCCCCTTCTAAAGGCATGTTGCGCAGCTTC
TCTCTTTTGCTTTGCAGACTCCTATCTGGCAAGCCACTACAAAAAGGTCTGTAGTATCTC
TTCTTTGTGGTGGAGGGACTTTTCAAGAGGGAAGGATCCATGATTGGCATATTCCTGAAG
TATTGATGGGGATTTTGCTCTTGTTCTTGCTTTGGCATATTCCTGAAGCATTGATGGGGA
TTTATTAGCTAGCAAATGCTTTAATAGGTCACAGTCAAATTGTAATTGAATGTGAAGGGT
ATATCTCATTGCCTACTCATTTATATTGGAGAATCTTGAATGAGAATTGTCAAATTTGAA
GGTTTATACTCAA
■■Homology search results ■■ -
sp_hit_id Q683I9
Definition sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana
Align length 17
Score (bit) 31.6
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912958|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_G08.
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protei...    32   2.1  
sp|Q5R7Y0|BAI2_PONAB Brain-specific angiogenesis inhibitor 2 OS=...    32   2.1  
sp|Q8CGM1|BAI2_MOUSE Brain-specific angiogenesis inhibitor 2 OS=...    32   2.1  
sp|O60241|BAI2_HUMAN Brain-specific angiogenesis inhibitor 2 OS=...    32   2.1  
sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protei...    31   2.7  
sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protei...    31   2.7  
sp|A6LSQ4|IF2_CLOB8 Translation initiation factor IF-2 OS=Clostr...    31   3.5  
sp|Q6JQN1|ACD10_HUMAN Acyl-CoA dehydrogenase family member 10 OS...    31   3.5  
sp|A8C756|THADA_MOUSE Thyroid adenoma-associated protein homolog...    30   4.5  
sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protei...    30   4.6  
sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containi...    30   4.6  
sp|Q91VN4|CHCH6_MOUSE Coiled-coil-helix-coiled-coil-helix domain...    30   5.9  
sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protei...    30   6.0  
sp|Q6DEJ6|MFS2B_DANRE Major facilitator superfamily domain-conta...    30   7.8  
sp|Q5U3U7|MFS2A_DANRE Major facilitator superfamily domain-conta...    30   7.8  
sp|Q6AG81|SYR_LEIXX Arginyl-tRNA synthetase OS=Leifsonia xyli su...    30   7.9  

>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein
           At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
          Length = 573

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
 Frame = +2

Query: 2   DC--IHHFRDGACSCED 46
           DC   HHFRDG+CSC D
Sbjct: 555 DCNRFHHFRDGSCSCRD 571


>sp|Q5R7Y0|BAI2_PONAB Brain-specific angiogenesis inhibitor 2 OS=Pongo
            abelii GN=BAI2 PE=2 SV=2
          Length = 1485

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = -1

Query: 244  RRDTTDLFVVACQIGVCKAKERSCATCL*KGPVHYSRELEIFHDTPKDSLLPCQYVI 74
            RR+  D  VV CQ+GVC+A E   +    K     + +L+I  D  KD  L CQ V+
Sbjct: 1106 RREVQD--VVKCQMGVCRADESEDSPDSCK-----NGQLQILSDFEKDVDLACQTVL 1155


>sp|Q8CGM1|BAI2_MOUSE Brain-specific angiogenesis inhibitor 2 OS=Mus
            musculus GN=Bai2 PE=1 SV=2
          Length = 1561

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = -1

Query: 244  RRDTTDLFVVACQIGVCKAKERSCATCL*KGPVHYSRELEIFHDTPKDSLLPCQYVI 74
            RR+  D  VV CQ+GVC+A E   +    K     + +L+I  D  KD  L CQ V+
Sbjct: 1200 RREVQD--VVKCQMGVCRADESEDSPDSCK-----NGQLQILSDFEKDVDLACQTVL 1249


>sp|O60241|BAI2_HUMAN Brain-specific angiogenesis inhibitor 2 OS=Homo
            sapiens GN=BAI2 PE=2 SV=1
          Length = 1572

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = -1

Query: 244  RRDTTDLFVVACQIGVCKAKERSCATCL*KGPVHYSRELEIFHDTPKDSLLPCQYVI 74
            RR+  D  VV CQ+GVC+A E   +    K     + +L+I  D  KD  L CQ V+
Sbjct: 1194 RREVQD--VVKCQMGVCRADESEDSPDSCK-----NGQLQILSDFEKDVDLACQTVL 1243


>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein
           At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
          Length = 894

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +2

Query: 5   CIHHFRDGACSCED 46
           C+HHF++G CSC+D
Sbjct: 879 CLHHFKNGDCSCKD 892


>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-H65 PE=2 SV=2
          Length = 768

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 8   IHHFRDGACSCED 46
           +HHFRDG CSC D
Sbjct: 754 VHHFRDGKCSCND 766


>sp|A6LSQ4|IF2_CLOB8 Translation initiation factor IF-2
           OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB
           8052) GN=infB PE=3 SV=1
          Length = 695

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = -2

Query: 396 DCDLLKHLLANKSPSMLQEYAKARTRAKSPSILQEYANHGSFPLEKSLHHKEE 238
           D +L+K LLA KSPS L   A A     S SI+  Y +  +  L K +  K++
Sbjct: 43  DAELIKELLAGKSPSDL--VASADNAENSKSIVDVYEDELAEQLNKGIKKKKK 93


>sp|Q6JQN1|ACD10_HUMAN Acyl-CoA dehydrogenase family member 10
           OS=Homo sapiens GN=ACAD10 PE=2 SV=1
          Length = 1059

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -1

Query: 358 PINASGICQSKNKSKIPINTSGICQSWILPS*KVPPPQRRDTTDLFVVACQIGVCKAKER 179
           P+    I Q + K    + T+ +  ++ LP+ K   P  R   D+ V +C  G+CK   R
Sbjct: 136 PVMTEAITQIRAKG---LQTAVLSNNFYLPNQKSFLPLDRKQFDVIVESCMEGICKPDPR 192

Query: 178 SCATCL 161
               CL
Sbjct: 193 IYKLCL 198


>sp|A8C756|THADA_MOUSE Thyroid adenoma-associated protein homolog
           OS=Mus musculus GN=Thada PE=2 SV=1
          Length = 1938

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 207 WQATTKRSVVSLLCGGGTFQEGRIHDWHIPEVL 305
           W  T    V+S+LCGG   Q   + D+++P +L
Sbjct: 522 WHETWVFPVLSVLCGGNLDQRSYVIDYYLPRIL 554


>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein
           At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
          Length = 741

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 11  HHFRDGACSCED 46
           HHFRDG CSC D
Sbjct: 728 HHFRDGVCSCND 739
tr_hit_id O58162
Definition tr|O58162|O58162_PYRHO Putative uncharacterized protein PH0425 OS=Pyrococcus horikoshii
Align length 62
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912958|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_G08.
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O58162|O58162_PYRHO Putative uncharacterized protein PH0425 O...    37   0.49 
tr|Q2BBL2|Q2BBL2_9BACI Transcriptional regulator, AraC family pr...    35   1.9  
tr|B5EQB0|B5EQB0_ACIF5 Putative uncharacterized protein OS=Acidi...    34   3.2  
tr|B7J9J3|B7J9J3_THIFE Putative uncharacterized protein OS=Acidi...    34   3.2  
tr|B4LXD7|B4LXD7_DROVI GJ24368 OS=Drosophila virilis GN=GJ24368 ...    34   3.2  
tr|A7PXY9|A7PXY9_VITVI Chromosome chr15 scaffold_37, whole genom...    34   3.3  
tr|A5BWE3|A5BWE3_VITVI Putative uncharacterized protein OS=Vitis...    34   3.3  
tr|Q54KL7|Q54KL7_DICDI Putative uncharacterized protein OS=Dicty...    34   3.3  
tr|Q4Q1D1|Q4Q1D1_LEIMA Putative uncharacterized protein OS=Leish...    34   4.3  
tr|B8MPN4|B8MPN4_9EURO Putative uncharacterized protein OS=Talar...    33   7.1  
tr|Q9LFW4|Q9LFW4_ARATH PCMP-H2 protein (Fragment) OS=Arabidopsis...    33   7.3  
tr|B0TJE2|B0TJE2_SHEHH Cytochrome bd ubiquinol oxidase subunit I...    33   9.3  
tr|B6KF54|B6KF54_TOXGO Sec7 domain-containing protein OS=Toxopla...    33   9.3  

>tr|O58162|O58162_PYRHO Putative uncharacterized protein PH0425
           OS=Pyrococcus horikoshii GN=PH0425 PE=4 SV=1
          Length = 440

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -3

Query: 341 NMPKQEQEQNPHQYFRNMPIMDPSLLKSPSTTKKRYYRPFCSGLPDRSLQSKREKLRNMP 162
           ++PKQ+  +  + + +N+   +  LLK P   K+ +Y  F  G+ ++ L    EK+   P
Sbjct: 102 DLPKQDNFECLYHFIQNLIAKEKGLLKPPRNMKEWFYYMFGRGIAEKYLIPYNEKIWKYP 161

Query: 161 LE 156
           LE
Sbjct: 162 LE 163


>tr|Q2BBL2|Q2BBL2_9BACI Transcriptional regulator, AraC family
           protein OS=Bacillus sp. NRRL B-14911 GN=B14911_16400
           PE=4 SV=1
          Length = 311

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -3

Query: 347 FRNMPKQEQEQNPHQYFRNMPIMDPSLLKSP--STTKKRYYRPFCSGLPD 204
           F N+ K+EQ+QNP+  FR + +     ++ P  +T  ++   P+  G+PD
Sbjct: 129 FSNIKKEEQQQNPYNEFRWLDLDKVRTIELPVCATVNRQSVGPYTEGIPD 178


>tr|B5EQB0|B5EQB0_ACIF5 Putative uncharacterized protein
           OS=Acidithiobacillus ferrooxidans (strain ATCC 53993)
           GN=Lferr_1113 PE=4 SV=1
          Length = 165

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 231 VVSLLCGGGTFQEGRIHDWHIPEVLMGILLLFLLWHIPEALMGIY*LANALIG--HSQIV 404
           +++LLC G T     +HDW    VL+ +LL +++W  P +L     +  AL+      + 
Sbjct: 39  ILALLCAGFTM----LHDWRWGLVLLVVLLAWVVWRCPWSLRTNQDMPEALLSGRDGGLQ 94

Query: 405 IECEGYISLPTHL 443
           +  +    LP HL
Sbjct: 95  VRMDSGSVLPVHL 107


>tr|B7J9J3|B7J9J3_THIFE Putative uncharacterized protein
           OS=Acidithiobacillus ferrooxidans ATCC 23270 GN=AFE_1393
           PE=4 SV=1
          Length = 176

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 231 VVSLLCGGGTFQEGRIHDWHIPEVLMGILLLFLLWHIPEALMGIY*LANALIG--HSQIV 404
           +++LLC G T     +HDW    VL+ +LL +++W  P +L     +  AL+      + 
Sbjct: 50  ILALLCAGFTM----LHDWRWGLVLLVVLLAWVVWRCPWSLRTNQDMPEALLSGRDGGLQ 105

Query: 405 IECEGYISLPTHL 443
           +  +    LP HL
Sbjct: 106 VRMDSGSVLPVHL 118


>tr|B4LXD7|B4LXD7_DROVI GJ24368 OS=Drosophila virilis GN=GJ24368
           PE=4 SV=1
          Length = 1030

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -3

Query: 356 HQCFRNMPKQEQEQNPHQYFRNMPIMDPSLLKSPSTTKKRYYRPFCSGLPDRSLQSKREK 177
           HQ  +   +Q+Q+Q   Q  +  P  DP+ +     +   ++   C G    SLQ K EK
Sbjct: 380 HQAAQQQLQQQQQQQQQQQQKQQPYTDPNTIDQYLLSWNNFHGNMCRGF--HSLQ-KDEK 436

Query: 176 LRNMPLEGAGALFK 135
           + ++ +   G +FK
Sbjct: 437 MVDVTIAAGGKIFK 450


>tr|A7PXY9|A7PXY9_VITVI Chromosome chr15 scaffold_37, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026234001
           PE=4 SV=1
          Length = 748

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 2   DCIHHFRDGACSCED 46
           +C HHFR+GACSC D
Sbjct: 732 NCFHHFREGACSCSD 746


>tr|A5BWE3|A5BWE3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002466 PE=4 SV=1
          Length = 440

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 2   DCIHHFRDGACSCED 46
           +C HHFR+GACSC D
Sbjct: 424 NCFHHFREGACSCSD 438


>tr|Q54KL7|Q54KL7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0219211 PE=4 SV=1
          Length = 728

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -1

Query: 214 ACQIGVCKAKERSCATCL*KGPVHYSRELEIFHDTPKDSLLPCQYVILTC 65
           A ++G  K  +R C+TCL K   HY+RE+ I  D P      C + + TC
Sbjct: 673 AQELGKPKCNKRFCSTCLLK---HYNREVNILKDGPS---WECPFCLNTC 716


>tr|Q4Q1D1|Q4Q1D1_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF36.2880 PE=4 SV=1
          Length = 1717

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 26/94 (27%), Positives = 45/94 (47%)
 Frame = -1

Query: 298 SGICQSWILPS*KVPPPQRRDTTDLFVVACQIGVCKAKERSCATCL*KGPVHYSRELEIF 119
           S  C   ++P+ +V PP   + + +F + C   V    +   A C  +  V+Y   +  F
Sbjct: 606 SQACPYTVVPTQQVVPP---NGSAVFQLQCSSTV---SDELPAACTLECYVNYE-SMSAF 658

Query: 118 HDTPKDSLLPCQYVILTCTIYIVSIFTGASSISK 17
           +  P   ++P Q   +TCT  I+S+FT A   S+
Sbjct: 659 YLAPDACVVPPQCFTVTCTSAIISVFTSAKQKSQ 692


>tr|B8MPN4|B8MPN4_9EURO Putative uncharacterized protein
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_106830 PE=4
           SV=1
          Length = 244

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = -3

Query: 344 RNMPKQEQEQN-PHQYFRNMPIMDPSLLKSPSTTKKRYYRPFCSGLPDRSLQSKREKLRN 168
           R +PK+EQEQ+ PHQ   +   ++P+  K   TT+ R     C   P  S++ + + L+N
Sbjct: 74  RRLPKREQEQDPPHQPSHS---IEPASKKMQCTTQSR----GCLDKPTPSIEGESDSLQN 126

Query: 167 MPLE 156
             LE
Sbjct: 127 TTLE 130