BP912969 |
Clone id |
YMU001_000024_H07 |
Library |
YMU01 |
Length |
542 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000024_H07. |
Accession |
BP912969 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGGAGCTGCAGGCCAACAAGAAGGAGAAAATCCATAAGAAGAGATAGCCTTGTGACAATG AGTCGTCCACTAAAGAGTCAGAATCCAGCACCAATCCCAGTTCATCTGAGAGTGAGTCAG ATGACAAAGGCAAGGGAAAGAAAAAGGAATCATGGACCCAAAAGCTGGAGGAAATGTCAA AGCAAATTGATGAAATAGCTACAAGAAGACCTTTAGTAAAGAAAATGGAGATCTGGTGTT CTAAATGTAGATCTAAAGATCACATATCTAATGAATGCTCACATTGCACATATTGCAAGG CATTTATCCATGTATAAAACAATTGTGGCATAAAAATTCATCATCTTAAAAAGAGAAAAG ATTTGTCAATGATTGCACTGACAAACTCTAAGACAGTAAAAGCAGATGGAGCCAGCGGTT CTAAAGATAATGAAACCAGCACAAGTATTGGAGTGGCCAAGGTAGATATCAAGGGAGTAT TGGATGAGGCATTGGTGACTTTCATAAAACAAGCTTAAATTGCTACACATGTGGAGAGTA CG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q24761 |
Definition |
sp|Q24761|TRSF_DROVI Female-specific protein transformer OS=Drosophila virilis |
Align length |
77 |
Score (bit) |
32.0 |
E-value |
2.0 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912969|Adiantum capillus-veneris mRNA, clone: YMU001_000024_H07. (542 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q24761|TRSF_DROVI Female-specific protein transformer OS=Dros... 32 2.0 sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial OS... 32 2.6 sp|Q45KJ6|LN28B_MOUSE Lin-28 homolog B OS=Mus musculus GN=Lin28b... 32 2.6 sp|Q6ZN17|LN28B_HUMAN Lin-28 homolog B OS=Homo sapiens GN=LIN28B... 31 4.5 sp|Q45KJ4|LN28B_CHICK Lin-28 homolog B OS=Gallus gallus GN=LIN28... 31 4.5 sp|Q8AVK2|LN28B_XENLA Lin-28 homolog B (Fragment) OS=Xenopus lae... 30 5.8 sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo ... 30 5.8 sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo s... 30 5.8 sp|Q7K480|BN3D1_DROME Probable methyltransferase bin3 OS=Drosoph... 30 9.9 sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae GN... 30 9.9
>sp|Q24761|TRSF_DROVI Female-specific protein transformer OS=Drosophila virilis GN=tra PE=3 SV=1 Length = 199
Score = 32.0 bits (71), Expect = 2.0 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 12/77 (15%) Frame = +1
Query: 1 RSCRPTRRRKSIR------------RDSLVTMSRPLKSQNPAPIPVHLRVSQMTKARERK 144 RS R TRRR R RD + + + +Q P P R S+ + R R Sbjct: 8 RSPRDTRRRSRQREKMPYFADEVRERDRVRNLPKLKTTQKRTPTPPRERRSRHERPRSRS 67
Query: 145 RNHGPKSWRKCQSKLMK 195 R H P+ R CQ +L + Sbjct: 68 RTHSPEQSR-CQRRLSR 83
>sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial OS=Reclinomonas americana GN=RPL32 PE=3 SV=1 Length = 62
Score = 31.6 bits (70), Expect = 2.6 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = +3
Query: 195 IATRRPLVKKMEIWCSKCRS--KDHISNE--CSHCTYCKAFIHV*NNCG 329 + R+P V + +I R+ K ++SN C HC Y K H+ NNCG Sbjct: 3 VPKRKPSVSRRKIRNVFIRAEMKKNLSNYSICKHCNYVKKKHHICNNCG 51
>sp|Q45KJ6|LN28B_MOUSE Lin-28 homolog B OS=Mus musculus GN=Lin28b PE=2 SV=2 Length = 247
Score = 31.6 bits (70), Expect = 2.6 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%) Frame = +3
Query: 237 CSKCRSKDHISNECS------HCTYCKAFIHV*NNCGIKI 338 C C DH + ECS C YC++ +H+ NC K+ Sbjct: 127 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKL 166
>sp|Q6ZN17|LN28B_HUMAN Lin-28 homolog B OS=Homo sapiens GN=LIN28B PE=1 SV=1 Length = 250
Score = 30.8 bits (68), Expect = 4.5 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%) Frame = +3
Query: 237 CSKCRSKDHISNECS------HCTYCKAFIHV*NNC 326 C C DH + ECS C YC++ +H+ NC Sbjct: 129 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
>sp|Q45KJ4|LN28B_CHICK Lin-28 homolog B OS=Gallus gallus GN=LIN28B PE=2 SV=1 Length = 250
Score = 30.8 bits (68), Expect = 4.5 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%) Frame = +3
Query: 237 CSKCRSKDHISNECS------HCTYCKAFIHV*NNC 326 C C DH + ECS C YC++ +H+ NC Sbjct: 129 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
>sp|Q8AVK2|LN28B_XENLA Lin-28 homolog B (Fragment) OS=Xenopus laevis GN=lin28b PE=2 SV=1 Length = 252
Score = 30.4 bits (67), Expect = 5.8 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%) Frame = +3
Query: 237 CSKCRSKDHISNECS------HCTYCKAFIHV*NNCGIKI 338 C C DH + EC+ C YC++ +H+ NC KI Sbjct: 132 CYNCGGLDHHAKECNLPPQPKKCHYCQSTMHMVANCPHKI 171
>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1 Length = 902
Score = 30.4 bits (67), Expect = 5.8 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3
Query: 159 QKLEEMSKQIDEIATRRPLVKKMEIWCSKCRSKDHISNECSHCTYCKAFIH 311 Q+LEE+ KQ+ +AT L + +E+ R K + N H A+++ Sbjct: 132 QELEELRKQLGSVATGSTLQQSLELKRKMLRDKQNKKNSDQHLPIFPAWVY 182
>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2 Length = 902
Score = 30.4 bits (67), Expect = 5.8 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3
Query: 159 QKLEEMSKQIDEIATRRPLVKKMEIWCSKCRSKDHISNECSHCTYCKAFIH 311 Q+LEE+ KQ+ +AT L + +E+ R K + N H A+++ Sbjct: 132 QELEELRKQLGSVATGSTLQQSLELKRKMLRDKQNKKNSGQHLPIFPAWVY 182
>sp|Q7K480|BN3D1_DROME Probable methyltransferase bin3 OS=Drosophila melanogaster GN=bin3 PE=1 SV=1 Length = 1367
Score = 29.6 bits (65), Expect = 9.9 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +1
Query: 67 PLKSQNPAPIPVHLRVSQMTKARERKRNHGPKSWRKCQSK 186 P KS++P P+P + +Q + R ++ GPK+ K SK Sbjct: 46 PGKSKSPTPLPGKSQAAQHHQFRAPQQQQGPKNRNKAWSK 85
>sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae GN=AIR2 PE=1 SV=1 Length = 344
Score = 29.6 bits (65), Expect = 9.9 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 6/38 (15%) Frame = +3
Query: 231 IWCSKCRSKDHISNECSH------CTYCKAFIHV*NNC 326 I CSKC H ++C H CT CK+ H C Sbjct: 99 IQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERC 136
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9U3M7 |
Definition |
tr|A9U3M7|A9U3M7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
66 |
Score (bit) |
40.8 |
E-value |
0.046 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912969|Adiantum capillus-veneris mRNA, clone: YMU001_000024_H07. (542 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9U3M7|A9U3M7_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.046 tr|A9TNC9|A9TNC9_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.046 tr|A9U6B9|A9U6B9_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.079 tr|A9U6B8|A9U6B8_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.079 tr|A9TQN9|A9TQN9_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.079 tr|A9SQD2|A9SQD2_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.079 tr|A9RUU5|A9RUU5_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.079 tr|A9U231|A9U231_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.10 tr|A9S4F9|A9S4F9_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.10 tr|A9RPR2|A9RPR2_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.10 tr|A9TRA3|A9TRA3_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.14 tr|A9TZ40|A9TZ40_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18 tr|A9T3W8|A9T3W8_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18 tr|A9T1G3|A9T1G3_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18 tr|A9SV69|A9SV69_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18 tr|A9SQ04|A9SQ04_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18 tr|A9SIP4|A9SIP4_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18 tr|A9S971|A9S971_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18 tr|A9U3X0|A9U3X0_PHYPA Predicted protein (Fragment) OS=Physcomit... 39 0.23 tr|A9U2G0|A9U2G0_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23 tr|A9TKN0|A9TKN0_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23 tr|A9THC3|A9THC3_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23 tr|A9TAU0|A9TAU0_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23 tr|A9T6T9|A9T6T9_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23 tr|A9T6A0|A9T6A0_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23 tr|A9SYL0|A9SYL0_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23 tr|A9SKZ9|A9SKZ9_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23 tr|A9S9W6|A9S9W6_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23 tr|A9S643|A9S643_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23 tr|A9RV52|A9RV52_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23
>tr|A9U3M7|A9U3M7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_101413 PE=4 SV=1 Length = 702
Score = 40.8 bits (94), Expect = 0.046 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 9/66 (13%) Frame = +3
Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECS-------HCTYCKAFI 308 T+K+ E++ + D+ +P + +WCS C+ +DH+ ECS CT+C + Sbjct: 83 TKKMSELAVNLAKDKEKRHKPTNMRPNVWCSNCKEQDHLVTECSSPPQMMVQCTFCGS-K 141
Query: 309 HV*NNC 326 H NC Sbjct: 142 HTTANC 147
>tr|A9TNC9|A9TNC9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_95013 PE=4 SV=1 Length = 187
Score = 40.8 bits (94), Expect = 0.046 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 9/66 (13%) Frame = +3
Query: 156 TQKLEEMSKQ--IDEIATRRPLVKKMEIWCSKCRSKDHISNEC-------SHCTYCKAFI 308 T+K+EEM+ ID+ ++P + +WCS C+ H+ EC CT+C + Sbjct: 123 TKKMEEMAVNMAIDKKKRQKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGS-K 181
Query: 309 HV*NNC 326 H+ NC Sbjct: 182 HITANC 187
>tr|A9U6B9|A9U6B9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_103131 PE=4 SV=1 Length = 201
Score = 40.0 bits (92), Expect = 0.079 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 9/66 (13%) Frame = +3
Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECS-------HCTYCKAFI 308 T+K++E++ + D+ +P ++ +WCS C+ + H+ EC CT+C Sbjct: 118 TKKMDELAVNLAKDKEKRHKPTNMRLNVWCSNCKGQGHLVTECPLPPQMTVQCTFCGG-K 176
Query: 309 HV*NNC 326 H+ NC Sbjct: 177 HITTNC 182
>tr|A9U6B8|A9U6B8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_103130 PE=4 SV=1 Length = 201
Score = 40.0 bits (92), Expect = 0.079 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 9/66 (13%) Frame = +3
Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECS-------HCTYCKAFI 308 T+K++E++ + D+ +P ++ +WCS C+ + H+ EC CT+C Sbjct: 118 TKKMDELAVNLAKDKEKRHKPTNMRLNVWCSNCKGQGHLVTECPLPPQMTVQCTFCGG-K 176
Query: 309 HV*NNC 326 H+ NC Sbjct: 177 HITTNC 182
>tr|A9TQN9|A9TQN9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_95887 PE=4 SV=1 Length = 282
Score = 40.0 bits (92), Expect = 0.079 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%) Frame = +3
Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECS-------HCTYCKAFI 308 T+K+EEM+ + D+ ++P + +WCS C+ H+ EC+ CT+C+ Sbjct: 123 TKKMEEMAVNMAKDKEKRQKPTNTRTNVWCSNCQGHGHLVTECASPSQVLGKCTFCEG-K 181
Query: 309 HV*NNC 326 H+ NC Sbjct: 182 HLTANC 187
>tr|A9SQD2|A9SQD2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_82504 PE=4 SV=1 Length = 922
Score = 40.0 bits (92), Expect = 0.079 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 9/87 (10%) Frame = +3
Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECSH-------CTYCKAFI 308 T+K++E++ + D+ +P+ + +WCS C+ + H+ ECS CT+C Sbjct: 345 TKKIDELAVNLAKDKEKRHKPINMRPNVWCSNCKGQGHLVTECSSPPQMMVLCTFCGG-K 403
Query: 309 HV*NNCGIKIHHLKKRKDLSMIALTNS 389 H NC +L+K++ + ++ S Sbjct: 404 HTTANC----WNLRKQQQVGQQTMSQS 426
>tr|A9RUU5|A9RUU5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_70846 PE=4 SV=1 Length = 586
Score = 40.0 bits (92), Expect = 0.079 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 9/56 (16%) Frame = +3
Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECS-------HCTYC 296 T+K++E++ + D+ +P ++ +WCS C+ + H+ ECS CT+C Sbjct: 247 TKKMDELAVNLAKDKEKRHKPTNMRLNVWCSNCKGQGHLVTECSSPPQMMVQCTFC 302
>tr|A9U231|A9U231_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_100576 PE=4 SV=1 Length = 551
Score = 39.7 bits (91), Expect = 0.10 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 9/56 (16%) Frame = +3
Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECS-------HCTYC 296 T+K++E++ + D+ + + + +WCS C+ + H+ ECS HCT+C Sbjct: 360 TKKMDELAVNLAKDKEKRHKSINMRPNVWCSNCKGQGHLVTECSSPPQMMVHCTFC 415
>tr|A9S4F9|A9S4F9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_74421 PE=4 SV=1 Length = 334
Score = 39.7 bits (91), Expect = 0.10 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 9/56 (16%) Frame = +3
Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNEC-------SHCTYC 296 T+K+EEM+ + D+ ++P + +WC+ C+ DH+ EC CT+C Sbjct: 123 TKKMEEMAVNMAKDKEKRQKPTNTRTNVWCNNCQGDDHLVTECPSPSQVLGKCTFC 178
>tr|A9RPR2|A9RPR2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_68907 PE=4 SV=1 Length = 192
Score = 39.7 bits (91), Expect = 0.10 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Frame = +3
Query: 159 QKLEEMSKQIDEIATRRPLVKKMEIWCSKCRSKDHISNEC-------SHCTYCKAFIHV* 317 +K+EEM + + +P K +WCS C+ H+ EC CT+C H+ Sbjct: 120 KKMEEMVVNMAKDKRHKPTNTKTNVWCSNCKDHGHLVTECPSPSQMIGQCTFCGG-KHLT 178
Query: 318 NNC 326 NC Sbjct: 179 TNC 181
|