BP912969
Clone id YMU001_000024_H07
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGGAGCTGCAGGCCAACAAGAAGGAGAAAATCCATAAGAAGAGATAGCCTTGTGACAATG
AGTCGTCCACTAAAGAGTCAGAATCCAGCACCAATCCCAGTTCATCTGAGAGTGAGTCAG
ATGACAAAGGCAAGGGAAAGAAAAAGGAATCATGGACCCAAAAGCTGGAGGAAATGTCAA
AGCAAATTGATGAAATAGCTACAAGAAGACCTTTAGTAAAGAAAATGGAGATCTGGTGTT
CTAAATGTAGATCTAAAGATCACATATCTAATGAATGCTCACATTGCACATATTGCAAGG
CATTTATCCATGTATAAAACAATTGTGGCATAAAAATTCATCATCTTAAAAAGAGAAAAG
ATTTGTCAATGATTGCACTGACAAACTCTAAGACAGTAAAAGCAGATGGAGCCAGCGGTT
CTAAAGATAATGAAACCAGCACAAGTATTGGAGTGGCCAAGGTAGATATCAAGGGAGTAT
TGGATGAGGCATTGGTGACTTTCATAAAACAAGCTTAAATTGCTACACATGTGGAGAGTA
CG
■■Homology search results ■■ -
sp_hit_id Q24761
Definition sp|Q24761|TRSF_DROVI Female-specific protein transformer OS=Drosophila virilis
Align length 77
Score (bit) 32.0
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912969|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_H07.
(542 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q24761|TRSF_DROVI Female-specific protein transformer OS=Dros... 32 2.0
sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial OS... 32 2.6
sp|Q45KJ6|LN28B_MOUSE Lin-28 homolog B OS=Mus musculus GN=Lin28b... 32 2.6
sp|Q6ZN17|LN28B_HUMAN Lin-28 homolog B OS=Homo sapiens GN=LIN28B... 31 4.5
sp|Q45KJ4|LN28B_CHICK Lin-28 homolog B OS=Gallus gallus GN=LIN28... 31 4.5
sp|Q8AVK2|LN28B_XENLA Lin-28 homolog B (Fragment) OS=Xenopus lae... 30 5.8
sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo ... 30 5.8
sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo s... 30 5.8
sp|Q7K480|BN3D1_DROME Probable methyltransferase bin3 OS=Drosoph... 30 9.9
sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae GN... 30 9.9

>sp|Q24761|TRSF_DROVI Female-specific protein transformer
OS=Drosophila virilis GN=tra PE=3 SV=1
Length = 199

Score = 32.0 bits (71), Expect = 2.0
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Frame = +1

Query: 1 RSCRPTRRRKSIR------------RDSLVTMSRPLKSQNPAPIPVHLRVSQMTKARERK 144
RS R TRRR R RD + + + +Q P P R S+ + R R
Sbjct: 8 RSPRDTRRRSRQREKMPYFADEVRERDRVRNLPKLKTTQKRTPTPPRERRSRHERPRSRS 67

Query: 145 RNHGPKSWRKCQSKLMK 195
R H P+ R CQ +L +
Sbjct: 68 RTHSPEQSR-CQRRLSR 83


>sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial
OS=Reclinomonas americana GN=RPL32 PE=3 SV=1
Length = 62

Score = 31.6 bits (70), Expect = 2.6
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3

Query: 195 IATRRPLVKKMEIWCSKCRS--KDHISNE--CSHCTYCKAFIHV*NNCG 329
+ R+P V + +I R+ K ++SN C HC Y K H+ NNCG
Sbjct: 3 VPKRKPSVSRRKIRNVFIRAEMKKNLSNYSICKHCNYVKKKHHICNNCG 51


>sp|Q45KJ6|LN28B_MOUSE Lin-28 homolog B OS=Mus musculus GN=Lin28b
PE=2 SV=2
Length = 247

Score = 31.6 bits (70), Expect = 2.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Frame = +3

Query: 237 CSKCRSKDHISNECS------HCTYCKAFIHV*NNCGIKI 338
C C DH + ECS C YC++ +H+ NC K+
Sbjct: 127 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKL 166


>sp|Q6ZN17|LN28B_HUMAN Lin-28 homolog B OS=Homo sapiens GN=LIN28B
PE=1 SV=1
Length = 250

Score = 30.8 bits (68), Expect = 4.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Frame = +3

Query: 237 CSKCRSKDHISNECS------HCTYCKAFIHV*NNC 326
C C DH + ECS C YC++ +H+ NC
Sbjct: 129 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164


>sp|Q45KJ4|LN28B_CHICK Lin-28 homolog B OS=Gallus gallus GN=LIN28B
PE=2 SV=1
Length = 250

Score = 30.8 bits (68), Expect = 4.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Frame = +3

Query: 237 CSKCRSKDHISNECS------HCTYCKAFIHV*NNC 326
C C DH + ECS C YC++ +H+ NC
Sbjct: 129 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164


>sp|Q8AVK2|LN28B_XENLA Lin-28 homolog B (Fragment) OS=Xenopus laevis
GN=lin28b PE=2 SV=1
Length = 252

Score = 30.4 bits (67), Expect = 5.8
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Frame = +3

Query: 237 CSKCRSKDHISNECS------HCTYCKAFIHV*NNCGIKI 338
C C DH + EC+ C YC++ +H+ NC KI
Sbjct: 132 CYNCGGLDHHAKECNLPPQPKKCHYCQSTMHMVANCPHKI 171


>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo
abelii GN=TUBGCP2 PE=2 SV=1
Length = 902

Score = 30.4 bits (67), Expect = 5.8
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3

Query: 159 QKLEEMSKQIDEIATRRPLVKKMEIWCSKCRSKDHISNECSHCTYCKAFIH 311
Q+LEE+ KQ+ +AT L + +E+ R K + N H A+++
Sbjct: 132 QELEELRKQLGSVATGSTLQQSLELKRKMLRDKQNKKNSDQHLPIFPAWVY 182


>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo
sapiens GN=TUBGCP2 PE=1 SV=2
Length = 902

Score = 30.4 bits (67), Expect = 5.8
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3

Query: 159 QKLEEMSKQIDEIATRRPLVKKMEIWCSKCRSKDHISNECSHCTYCKAFIH 311
Q+LEE+ KQ+ +AT L + +E+ R K + N H A+++
Sbjct: 132 QELEELRKQLGSVATGSTLQQSLELKRKMLRDKQNKKNSGQHLPIFPAWVY 182


>sp|Q7K480|BN3D1_DROME Probable methyltransferase bin3 OS=Drosophila
melanogaster GN=bin3 PE=1 SV=1
Length = 1367

Score = 29.6 bits (65), Expect = 9.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1

Query: 67 PLKSQNPAPIPVHLRVSQMTKARERKRNHGPKSWRKCQSK 186
P KS++P P+P + +Q + R ++ GPK+ K SK
Sbjct: 46 PGKSKSPTPLPGKSQAAQHHQFRAPQQQQGPKNRNKAWSK 85


>sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae
GN=AIR2 PE=1 SV=1
Length = 344

Score = 29.6 bits (65), Expect = 9.9
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Frame = +3

Query: 231 IWCSKCRSKDHISNECSH------CTYCKAFIHV*NNC 326
I CSKC H ++C H CT CK+ H C
Sbjct: 99 IQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERC 136


tr_hit_id A9U3M7
Definition tr|A9U3M7|A9U3M7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 66
Score (bit) 40.8
E-value 0.046
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912969|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_H07.
(542 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9U3M7|A9U3M7_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.046
tr|A9TNC9|A9TNC9_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.046
tr|A9U6B9|A9U6B9_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.079
tr|A9U6B8|A9U6B8_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.079
tr|A9TQN9|A9TQN9_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.079
tr|A9SQD2|A9SQD2_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.079
tr|A9RUU5|A9RUU5_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.079
tr|A9U231|A9U231_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.10
tr|A9S4F9|A9S4F9_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.10
tr|A9RPR2|A9RPR2_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.10
tr|A9TRA3|A9TRA3_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.14
tr|A9TZ40|A9TZ40_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18
tr|A9T3W8|A9T3W8_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18
tr|A9T1G3|A9T1G3_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18
tr|A9SV69|A9SV69_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18
tr|A9SQ04|A9SQ04_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18
tr|A9SIP4|A9SIP4_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18
tr|A9S971|A9S971_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.18
tr|A9U3X0|A9U3X0_PHYPA Predicted protein (Fragment) OS=Physcomit... 39 0.23
tr|A9U2G0|A9U2G0_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23
tr|A9TKN0|A9TKN0_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23
tr|A9THC3|A9THC3_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23
tr|A9TAU0|A9TAU0_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23
tr|A9T6T9|A9T6T9_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23
tr|A9T6A0|A9T6A0_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23
tr|A9SYL0|A9SYL0_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23
tr|A9SKZ9|A9SKZ9_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23
tr|A9S9W6|A9S9W6_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23
tr|A9S643|A9S643_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23
tr|A9RV52|A9RV52_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.23

>tr|A9U3M7|A9U3M7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_101413 PE=4 SV=1
Length = 702

Score = 40.8 bits (94), Expect = 0.046
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Frame = +3

Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECS-------HCTYCKAFI 308
T+K+ E++ + D+ +P + +WCS C+ +DH+ ECS CT+C +
Sbjct: 83 TKKMSELAVNLAKDKEKRHKPTNMRPNVWCSNCKEQDHLVTECSSPPQMMVQCTFCGS-K 141

Query: 309 HV*NNC 326
H NC
Sbjct: 142 HTTANC 147


>tr|A9TNC9|A9TNC9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_95013 PE=4 SV=1
Length = 187

Score = 40.8 bits (94), Expect = 0.046
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Frame = +3

Query: 156 TQKLEEMSKQ--IDEIATRRPLVKKMEIWCSKCRSKDHISNEC-------SHCTYCKAFI 308
T+K+EEM+ ID+ ++P + +WCS C+ H+ EC CT+C +
Sbjct: 123 TKKMEEMAVNMAIDKKKRQKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGS-K 181

Query: 309 HV*NNC 326
H+ NC
Sbjct: 182 HITANC 187


>tr|A9U6B9|A9U6B9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_103131 PE=4 SV=1
Length = 201

Score = 40.0 bits (92), Expect = 0.079
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Frame = +3

Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECS-------HCTYCKAFI 308
T+K++E++ + D+ +P ++ +WCS C+ + H+ EC CT+C
Sbjct: 118 TKKMDELAVNLAKDKEKRHKPTNMRLNVWCSNCKGQGHLVTECPLPPQMTVQCTFCGG-K 176

Query: 309 HV*NNC 326
H+ NC
Sbjct: 177 HITTNC 182


>tr|A9U6B8|A9U6B8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_103130 PE=4 SV=1
Length = 201

Score = 40.0 bits (92), Expect = 0.079
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Frame = +3

Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECS-------HCTYCKAFI 308
T+K++E++ + D+ +P ++ +WCS C+ + H+ EC CT+C
Sbjct: 118 TKKMDELAVNLAKDKEKRHKPTNMRLNVWCSNCKGQGHLVTECPLPPQMTVQCTFCGG-K 176

Query: 309 HV*NNC 326
H+ NC
Sbjct: 177 HITTNC 182


>tr|A9TQN9|A9TQN9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_95887 PE=4 SV=1
Length = 282

Score = 40.0 bits (92), Expect = 0.079
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Frame = +3

Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECS-------HCTYCKAFI 308
T+K+EEM+ + D+ ++P + +WCS C+ H+ EC+ CT+C+
Sbjct: 123 TKKMEEMAVNMAKDKEKRQKPTNTRTNVWCSNCQGHGHLVTECASPSQVLGKCTFCEG-K 181

Query: 309 HV*NNC 326
H+ NC
Sbjct: 182 HLTANC 187


>tr|A9SQD2|A9SQD2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_82504 PE=4 SV=1
Length = 922

Score = 40.0 bits (92), Expect = 0.079
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Frame = +3

Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECSH-------CTYCKAFI 308
T+K++E++ + D+ +P+ + +WCS C+ + H+ ECS CT+C
Sbjct: 345 TKKIDELAVNLAKDKEKRHKPINMRPNVWCSNCKGQGHLVTECSSPPQMMVLCTFCGG-K 403

Query: 309 HV*NNCGIKIHHLKKRKDLSMIALTNS 389
H NC +L+K++ + ++ S
Sbjct: 404 HTTANC----WNLRKQQQVGQQTMSQS 426


>tr|A9RUU5|A9RUU5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_70846 PE=4 SV=1
Length = 586

Score = 40.0 bits (92), Expect = 0.079
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Frame = +3

Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECS-------HCTYC 296
T+K++E++ + D+ +P ++ +WCS C+ + H+ ECS CT+C
Sbjct: 247 TKKMDELAVNLAKDKEKRHKPTNMRLNVWCSNCKGQGHLVTECSSPPQMMVQCTFC 302


>tr|A9U231|A9U231_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_100576 PE=4 SV=1
Length = 551

Score = 39.7 bits (91), Expect = 0.10
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Frame = +3

Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNECS-------HCTYC 296
T+K++E++ + D+ + + + +WCS C+ + H+ ECS HCT+C
Sbjct: 360 TKKMDELAVNLAKDKEKRHKSINMRPNVWCSNCKGQGHLVTECSSPPQMMVHCTFC 415


>tr|A9S4F9|A9S4F9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_74421 PE=4 SV=1
Length = 334

Score = 39.7 bits (91), Expect = 0.10
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Frame = +3

Query: 156 TQKLEEMSKQI--DEIATRRPLVKKMEIWCSKCRSKDHISNEC-------SHCTYC 296
T+K+EEM+ + D+ ++P + +WC+ C+ DH+ EC CT+C
Sbjct: 123 TKKMEEMAVNMAKDKEKRQKPTNTRTNVWCNNCQGDDHLVTECPSPSQVLGKCTFC 178


>tr|A9RPR2|A9RPR2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_68907 PE=4 SV=1
Length = 192

Score = 39.7 bits (91), Expect = 0.10
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Frame = +3

Query: 159 QKLEEMSKQIDEIATRRPLVKKMEIWCSKCRSKDHISNEC-------SHCTYCKAFIHV* 317
+K+EEM + + +P K +WCS C+ H+ EC CT+C H+
Sbjct: 120 KKMEEMVVNMAKDKRHKPTNTKTNVWCSNCKDHGHLVTECPSPSQMIGQCTFCGG-KHLT 178

Query: 318 NNC 326
NC
Sbjct: 179 TNC 181