BP912972
Clone id YMU001_000024_H10
Library
Length 359
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000024_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CAAGGCATAGGCCTTGGAGAGAGAGATGGCGAGAATCAGCGAGGAGTGGAGCGATTTTCG
CAAAGAGATAAAGATTGATCATCTTCCCTCTGAAAGCGATGACTATGAGAAGGCCAGAGA
AAAAATGCTGAGTTACAATGAACGAATGATCAATAAAATGCAAAGGAACCCTTTTATCTT
TCCAGGAACAGTCTGTGAGGATAGGACGAAGGGGATGGGAATCGGTATAGGCTTTACAAG
CCAACGCTAAAGGAGCTCCCTCGCAGGCCACCATTGGTGTGGCAAGTGCTTCCTGAGCAT
CAAGAAGAATACGAAAAAATGTATAAGAAGATAACGCACAAGTGGTGGAAATCTGGGAA
■■Homology search results ■■ -
sp_hit_id Q0SM34
Definition sp|Q0SM34|MURC_BORAP UDP-N-acetylmuramate--L-alanine ligase OS=Borrelia afzelii (strain PKo)
Align length 42
Score (bit) 30.4
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912972|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_H10.
(359 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0SM34|MURC_BORAP UDP-N-acetylmuramate--L-alanine ligase OS=B... 30 2.9
sp|O51757|MURC_BORBU UDP-N-acetylmuramate--L-alanine ligase OS=B... 30 3.8
sp|Q6NZK5|K1328_MOUSE Uncharacterized protein KIAA1328 OS=Mus mu... 30 3.8
sp|Q86T90|K1328_HUMAN Uncharacterized protein KIAA1328 OS=Homo s... 30 3.8
sp|P49756|RBM25_HUMAN Probable RNA-binding protein 25 OS=Homo sa... 30 4.9
sp|P79741|PESC_DANRE Pescadillo OS=Danio rerio GN=pes PE=2 SV=1 30 4.9
sp|Q65ZV7|MURC_BORGA UDP-N-acetylmuramate--L-alanine ligase OS=B... 30 4.9
sp|P10645|CMGA_HUMAN Chromogranin-A OS=Homo sapiens GN=CHGA PE=1... 29 6.5
sp|B0TYK5|SECA_FRAP2 Protein translocase subunit secA OS=Francis... 29 8.4
sp|O35573|LCAT_ELIQU Phosphatidylcholine-sterol acyltransferase ... 29 8.4

>sp|Q0SM34|MURC_BORAP UDP-N-acetylmuramate--L-alanine ligase
OS=Borrelia afzelii (strain PKo) GN=murC PE=3 SV=1
Length = 468

Score = 30.4 bits (67), Expect = 2.9
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = -2

Query: 184 WKDKRVPLHFIDHSFIVTQHFFSGLLIVIAFRGKMI--NLYL 65
+K+KR+ L F+ H+F T+ FF+ + V++ +I N+YL
Sbjct: 363 YKNKRIILDFMPHTFTRTKEFFNDFVEVLSVADILILHNIYL 404


>sp|O51757|MURC_BORBU UDP-N-acetylmuramate--L-alanine ligase
OS=Borrelia burgdorferi GN=murC PE=3 SV=1
Length = 468

Score = 30.0 bits (66), Expect = 3.8
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = -2

Query: 184 WKDKRVPLHFIDHSFIVTQHFFSGLLIVIAFRGKMI--NLYL 65
+K+KR+ L F+ H+F T+ FF+ + V++ +I N+YL
Sbjct: 363 YKNKRIILDFMPHTFTRTKEFFADFVEVLSAADILILHNIYL 404


>sp|Q6NZK5|K1328_MOUSE Uncharacterized protein KIAA1328 OS=Mus
musculus GN=Kiaa1328 PE=2 SV=2
Length = 612

Score = 30.0 bits (66), Expect = 3.8
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2

Query: 14 LEREMARISEEWSDFRKEIKIDHLPSESDDYEKAREKMLSYNERMINKMQ 163
L +E+AR+SEE KE+ + L +E + +EK ++ NE +I + +
Sbjct: 104 LIKELARVSEE-----KEVTEERLKTEQESFEKKIRQLEEQNELIIKERE 148


>sp|Q86T90|K1328_HUMAN Uncharacterized protein KIAA1328 OS=Homo
sapiens GN=KIAA1328 PE=2 SV=1
Length = 577

Score = 30.0 bits (66), Expect = 3.8
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2

Query: 14 LEREMARISEEWSDFRKEIKIDHLPSESDDYEKAREKMLSYNERMINKMQ 163
L +E+AR+SEE KE+ + L +E + +EK ++ NE +I + +
Sbjct: 105 LIKELARVSEE-----KEVTEERLKAEQESFEKKIRQLEEQNELIIKERE 149


>sp|P49756|RBM25_HUMAN Probable RNA-binding protein 25 OS=Homo
sapiens GN=RBM25 PE=1 SV=2
Length = 784

Score = 29.6 bits (65), Expect = 4.9
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Frame = +2

Query: 17 EREMARISEEWSDFRKEIKIDHLPSESDDYE------KAREKMLSYNERMIN 154
ERE R E + K+ K D E D YE K REK +Y ER+ N
Sbjct: 353 EREREREREREREREKDKKRDREEDEEDAYERRKLERKLREKEAAYQERLKN 404


>sp|P79741|PESC_DANRE Pescadillo OS=Danio rerio GN=pes PE=2 SV=1
Length = 582

Score = 29.6 bits (65), Expect = 4.9
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2

Query: 11 ALEREMARISEEWSDFRKEIKIDHLPSESDDYEK--AREKM 127
+L R +A + EE E ++DH P+E +D EK REKM
Sbjct: 283 SLARMVASVEEE------EAELDHFPTEGEDQEKMEVREKM 317


>sp|Q65ZV7|MURC_BORGA UDP-N-acetylmuramate--L-alanine ligase
OS=Borrelia garinii GN=murC PE=3 SV=1
Length = 468

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2

Query: 184 WKDKRVPLHFIDHSFIVTQHFFSGLLIVIAFRGKMI--NLYL 65
+K+KR+ L F+ H+F T+ FF + V+ +I N+YL
Sbjct: 363 YKNKRIILDFMPHTFTRTKEFFDDFVEVLNIADVLILHNIYL 404


>sp|P10645|CMGA_HUMAN Chromogranin-A OS=Homo sapiens GN=CHGA PE=1
SV=7
Length = 457

Score = 29.3 bits (64), Expect = 6.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2

Query: 2 KA*ALEREMARISEEWSDFRKEIKIDHLPSE 94
K+ LE+E R+S+EW D ++ K+D L E
Sbjct: 321 KSGELEQEEERLSKEWEDSKRWSKMDQLAKE 351


>sp|B0TYK5|SECA_FRAP2 Protein translocase subunit secA OS=Francisella
philomiragia subsp. philomiragia (strain ATCC 25017)
GN=secA PE=3 SV=1
Length = 907

Score = 28.9 bits (63), Expect = 8.4
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Frame = +2

Query: 11 ALEREMARISEEWSDFRKEIKIDHLP-----SESDDYEKAREKMLSYNERMINKMQRN 169
A E E R EEW + EIK +H DD E+ + +R K++RN
Sbjct: 830 ATEEETQRAQEEWKESMSEIKAEHESVIDNNQSEDDKEQEEAPKVQQVKREGPKIKRN 887


>sp|O35573|LCAT_ELIQU Phosphatidylcholine-sterol acyltransferase
(Fragment) OS=Eliomys quercinus GN=LCAT PE=3 SV=1
Length = 299

Score = 28.9 bits (63), Expect = 8.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1

Query: 253 ELPRRPPLVWQVLPEHQEEY 312
E R PP W++ P HQEEY
Sbjct: 83 ETVRAPPYDWRLEPRHQEEY 102


tr_hit_id A0DL71
Definition tr|A0DL71|A0DL71_PARTE Chromosome undetermined scaffold_55, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 55
Score (bit) 34.7
E-value 2.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912972|Adiantum capillus-veneris mRNA, clone:
YMU001_000024_H10.
(359 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0DL71|A0DL71_PARTE Chromosome undetermined scaffold_55, whol... 35 2.5
tr|Q02GP6|Q02GP6_PSEAB Putative uncharacterized protein OS=Pseud... 34 4.2
tr|Q7WXU7|Q7WXU7_PSEAE Putative uncharacterized protein OS=Pseud... 34 4.2
tr|B7GRH8|B7GRH8_BIFLO Putative uncharacterized protein OS=Bifid... 33 5.5
tr|A7NHT4|A7NHT4_ROSCS Amidohydrolase OS=Roseiflexus castenholzi... 33 7.2
tr|Q8IC05|Q8IC05_PLAF7 Heat shock protein 86 OS=Plasmodium falci... 33 7.2
tr|Q25882|Q25882_PLAFA Heat shock protein 86 OS=Plasmodium falci... 33 7.2
tr|Q25869|Q25869_PLAFA Heat-shock protein OS=Plasmodium falcipar... 33 7.2
tr|A5DZF6|A5DZF6_LODEL Putative uncharacterized protein OS=Lodde... 33 7.2
tr|A1B287|A1B287_PARDP Putative uncharacterized protein OS=Parac... 33 9.4
tr|Q1K066|Q1K066_DESAC Putative uncharacterized protein OS=Desul... 33 9.4
tr|B4XWC5|B4XWC5_9BRAN C-type lectin (Fragment) OS=Branchiostoma... 33 9.4

>tr|A0DL71|A0DL71_PARTE Chromosome undetermined scaffold_55, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00018105001 PE=4 SV=1
Length = 493

Score = 34.7 bits (78), Expect = 2.5
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +2

Query: 47 WSDFRKEIKIDHLPSESDDYEKAREKMLSYNERMINKMQRNPFIFPGTVCEDRTK 211
W +F+ EI ESD Y+ LSY ERM + Q N + E+R K
Sbjct: 113 WEEFQPEIVQTQQEPESDLYDDHLRSQLSYRERMRKEFQENQTLIEKEKQEERRK 167


>tr|Q02GP6|Q02GP6_PSEAB Putative uncharacterized protein
OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=PA14_58920 PE=4 SV=1
Length = 226

Score = 33.9 bits (76), Expect = 4.2
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2

Query: 71 KIDHLPSESDDYEKAREKMLSYNERMINKMQRNPFIFPGTVCEDRTKGMGIGIGFTSQR 247
+I+H + D YEK +K ER+ ++ + + PG EDR + + I + + R
Sbjct: 63 QIEHAKEKRDRYEKKAKKRRELRERLAKQLVASNYPLPGNTLEDRLEILQIALIYNRAR 121


>tr|Q7WXU7|Q7WXU7_PSEAE Putative uncharacterized protein
OS=Pseudomonas aeruginosa GN=RL114 PE=4 SV=1
Length = 226

Score = 33.9 bits (76), Expect = 4.2
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2

Query: 71 KIDHLPSESDDYEKAREKMLSYNERMINKMQRNPFIFPGTVCEDRTKGMGIGIGFTSQR 247
+I+H + D YEK +K ER+ ++ + + PG EDR + + I + + R
Sbjct: 63 QIEHAKEKRDRYEKKAKKRRELRERLAKQLVASNYPLPGNTLEDRLEILQIALIYNRAR 121


>tr|B7GRH8|B7GRH8_BIFLO Putative uncharacterized protein
OS=Bifidobacterium longum subsp. infantis ATCC 15697
GN=Blon_1320 PE=4 SV=1
Length = 349

Score = 33.5 bits (75), Expect = 5.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2

Query: 271 VACEGAPLALACKAYTDSHPLRPILTDCSWKDKRVPLHFID 149
VAC+G + A D HP ++ +DKR+PL FID
Sbjct: 121 VACDGDMIDTAVHGMLDRHPGSGVVVKFMLRDKRLPLAFID 161


>tr|A7NHT4|A7NHT4_ROSCS Amidohydrolase OS=Roseiflexus castenholzii
(strain DSM 13941 / HLO8) GN=Rcas_0916 PE=4 SV=1
Length = 395

Score = 33.1 bits (74), Expect = 7.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1

Query: 247 LKELPRRPPLVWQVLPEHQ 303
L LP RPP +W +LP+HQ
Sbjct: 370 LPRLPERPPAIWAILPDHQ 388


>tr|Q8IC05|Q8IC05_PLAF7 Heat shock protein 86 OS=Plasmodium
falciparum (isolate 3D7) GN=PF07_0029 PE=4 SV=1
Length = 745

Score = 33.1 bits (74), Expect = 7.2
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Frame = +1

Query: 1 QGIGLGERDGENQRGVERFSQRDKD*SSSL*KR*L*EGQRKNAELQ*TNDQ*NAKEPFYL 180
+G G GER+GE + ++ + DK+ S + E + N E D ++
Sbjct: 224 EGEGEGEREGEEEEEKKKKTGEDKNADESKEENEDEEKKEDNEEDDNKTDHPKVEDVTEE 283

Query: 181 SRNSL*G*DEGDGNRYRLYKPTLKELPRRPPLVWQVLPEH--QEEYEKMYKKITHKW 345
N+ E + + +EL ++ PL W PE EEY YK +T+ W
Sbjct: 284 LENAEKKKKEKRKKKIHTVEHEWEELNKQKPL-WMRKPEEVTNEEYASFYKSLTNDW 339


>tr|Q25882|Q25882_PLAFA Heat shock protein 86 OS=Plasmodium
falciparum GN=HSP86 PE=4 SV=1
Length = 745

Score = 33.1 bits (74), Expect = 7.2
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Frame = +1

Query: 1 QGIGLGERDGENQRGVERFSQRDKD*SSSL*KR*L*EGQRKNAELQ*TNDQ*NAKEPFYL 180
+G G GER+GE + ++ + DK+ S + E + N E D ++
Sbjct: 224 EGEGEGEREGEEEEEKKKKTGEDKNADESKEENEDEEKKEDNEEDDNKTDHPKVEDVTEE 283

Query: 181 SRNSL*G*DEGDGNRYRLYKPTLKELPRRPPLVWQVLPEH--QEEYEKMYKKITHKW 345
N+ E + + +EL ++ PL W PE EEY YK +T+ W
Sbjct: 284 LENAEKKKKEKRKKKIHTVEHEWEELNKQKPL-WMRKPEEVTNEEYASFYKSLTNDW 339


>tr|Q25869|Q25869_PLAFA Heat-shock protein OS=Plasmodium falciparum
PE=2 SV=1
Length = 745

Score = 33.1 bits (74), Expect = 7.2
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Frame = +1

Query: 1 QGIGLGERDGENQRGVERFSQRDKD*SSSL*KR*L*EGQRKNAELQ*TNDQ*NAKEPFYL 180
+G G GER+GE + ++ + DK+ S + E + N E D ++
Sbjct: 224 EGEGEGEREGEEEEEKKKKTGEDKNADESKEENEDEEKKEDNEEDDNKTDHPKVEDVTEE 283

Query: 181 SRNSL*G*DEGDGNRYRLYKPTLKELPRRPPLVWQVLPEH--QEEYEKMYKKITHKW 345
N+ E + + +EL ++ PL W PE EEY YK +T+ W
Sbjct: 284 LENAEKKKKEKRKKKIHTVEHEWEELNKQKPL-WMRKPEEVTNEEYASFYKSLTNDW 339


>tr|A5DZF6|A5DZF6_LODEL Putative uncharacterized protein
OS=Lodderomyces elongisporus GN=LELG_02743 PE=4 SV=1
Length = 1439

Score = 33.1 bits (74), Expect = 7.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2

Query: 14 LEREMARISEEWSDFRKEIKIDHLPSESDDYEKAREKMLSYNERMINK 157
+ERE+ R + EW + + IKI S ++A E+ML E + K
Sbjct: 467 IERELIRTNREWENLSRHIKIAEESRRSRSEDRAYEEMLKSRESLEEK 514


>tr|A1B287|A1B287_PARDP Putative uncharacterized protein
OS=Paracoccus denitrificans (strain Pd 1222)
GN=Pden_1531 PE=4 SV=1
Length = 308

Score = 32.7 bits (73), Expect = 9.4
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2

Query: 32 RISEEWSDFRKEIKIDHLPSESDDYEKAREKMLSYNERMINKMQRNPFIFPGTVCE---- 199
RI+ W+D RK ++ P D + A+ N+RM++ M +FPGT +
Sbjct: 234 RIAATWADNRKVPQVAFKP---DWAKHAKAAPFKRNDRMLDTMPIGVIVFPGTGIQENLA 290

Query: 200 DRTKGMGIGI 229
D+ + MGI +
Sbjct: 291 DKARKMGIPV 300