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NBDC - LSDB Archive
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BP912992
Clone id YMU001_000025_B08
Library
Length 478
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCATGCAGCTGCTGCAAGAGCTACCAGAGGAAGCTTATGTCTCCCCGCCCCCGACTTTCA
GCAAGGGCACGGACCAGAAAATACTCATGCAAGCGACGGCCAACCTTCAGAAGGAAGATT
GCAAATGATTAGGTGACCCTATACAAAACGAAGAAGGATATTCTTAAGGATTCTTAGTAC
TTGTATAACCAGCTCAAGGCGAGTTCCTCAAGTAGCATCTTTCTTGAAGATAAAGAGCTC
ACCAAGGACGAGTGGGAGAAGAAACTGGACATCAAGATAGCCCATCTGGAGTCGCGGATC
CGAGATGGTAACTTTCACTTGGAAAGGCTTCAAGCACAACTTGATGAGGTGCATAGTTAG
AACTTGTGACATGGGACCTAGTCTCTTTTTGTTCAGGAGTAGTCTCCTTATGGTTAATTG
TAATCAGAATCTAAAGGACCTAAAGACTCCAATGATATACGATGTATAAGTGCTATGC
■■Homology search results ■■ -
sp_hit_id P10587
Definition sp|P10587|MYH11_CHICK Myosin-11 OS=Gallus gallus
Align length 81
Score (bit) 35.4
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912992|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_B08.
         (478 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10587|MYH11_CHICK Myosin-11 OS=Gallus gallus GN=MYH11 PE=1 SV=4    35   0.13 
sp|A1SUI7|HSCB_PSYIN Co-chaperone protein hscB homolog OS=Psychr...    33   0.87 
sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus GN=MYH1...    32   1.5  
sp|Q5R5Q2|SRRM1_PONAB Serine/arginine repetitive matrix protein ...    30   5.6  
sp|Q52KI8|SRRM1_MOUSE Serine/arginine repetitive matrix protein ...    30   5.6  
sp|Q8IYB3|SRRM1_HUMAN Serine/arginine repetitive matrix protein ...    30   5.6  
sp|O08638|MYH11_MOUSE Myosin-11 OS=Mus musculus GN=Myh11 PE=1 SV=1     30   5.6  
sp|P32179|HAL2_YEAST 3'(2'),5'-bisphosphate nucleotidase OS=Sacc...    30   5.6  
sp|A2A2Z9|AN18B_HUMAN Ankyrin repeat domain-containing protein 1...    30   5.6  
sp|Q9VKK2|WDR59_DROME WD repeat-containing protein 59 homolog OS...    30   7.4  
sp|Q9Y6B7|AP4B1_HUMAN AP-4 complex subunit beta-1 OS=Homo sapien...    30   7.4  
sp|Q8IVF6|AN18A_HUMAN Ankyrin repeat domain-containing protein 1...    30   7.4  
sp|Q60563|SYCP1_MESAU Synaptonemal complex protein 1 (Fragment) ...    29   9.6  
sp|Q91ZV4|MOGT1_MOUSE 2-acylglycerol O-acyltransferase 1 OS=Mus ...    29   9.6  
sp|Q8WNZ8|HSP1_HIPCO Sperm protamine-P1 OS=Hipposideros commerso...    29   9.6  

>sp|P10587|MYH11_CHICK Myosin-11 OS=Gallus gallus GN=MYH11 PE=1 SV=4
          Length = 1979

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 26/81 (32%), Positives = 47/81 (58%)
 Frame = +1

Query: 106  FRRKIAND*VTLYKTKKDILKDS*YLYNQLKASSSSSIFLEDKELTKDEWEKKLDIKIAH 285
            F+R  AN    L KTK+ + KD+  L N++++ S +   +E K       +KKL++++  
Sbjct: 1221 FKRAKAN----LDKTKQTLEKDNADLANEIRSLSQAKQDVEHK-------KKKLEVQLQD 1269

Query: 286  LESRIRDGNFHLERLQAQLDE 348
            L+S+  DG    ER++ +L+E
Sbjct: 1270 LQSKYSDG----ERVRTELNE 1286


>sp|A1SUI7|HSCB_PSYIN Co-chaperone protein hscB homolog
           OS=Psychromonas ingrahamii (strain 37) GN=hscB PE=3 SV=1
          Length = 169

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 28/111 (25%), Positives = 51/111 (45%)
 Frame = +1

Query: 19  SYQRKLMSPRPRLSARARTRKYSCKRRPTFRRKIAND*VTLYKTKKDILKDS*YLYNQLK 198
           S + + M     ++   +T K SC R          D    +KT    L+D+ +L  Q++
Sbjct: 42  SERLRAMQKSTEINDAYQTLKNSCLRAQYLLLLAGLDIALEHKT----LQDTAFLVQQME 97

Query: 199 ASSSSSIFLEDKELTKDEWEKKLDIKIAHLESRIRDGNFHLERLQAQLDEV 351
              + + F ED +   DE+  +L  ++A LES+I +     + L+A  D +
Sbjct: 98  WRETIAAFTEDDQDKMDEFALQLQQQVAGLESKI-EVQLQNDELEATADSI 147


>sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus GN=MYH11
            PE=2 SV=2
          Length = 1972

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +1

Query: 106  FRRKIAND*VTLYKTKKDILKDS*YLYNQLKASSSSSIFLEDKELTKDEWEKKLDIKIAH 285
            F+R  AN    L KTK+ + K++  L  +L+    +   +E K+       KKL++++  
Sbjct: 1215 FKRAKAN----LDKTKQTLEKENADLAGELRVLGQAKQEVEHKK-------KKLEVQLQE 1263

Query: 286  LESRIRDGNFHLERLQAQL-DEVH 354
            L+S+  DG    ER +A+L D+VH
Sbjct: 1264 LQSKCSDG----ERARAELNDKVH 1283


>sp|Q5R5Q2|SRRM1_PONAB Serine/arginine repetitive matrix protein 1
           OS=Pongo abelii GN=SRRM1 PE=2 SV=1
          Length = 917

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 1   SCSCCKSYQRKLMSPRPRLSARARTRKYSCKRRPTFRRK 117
           S S  ++  R     RPR   R+R+R YS +RRP+ RR+
Sbjct: 282 SKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRR 320


>sp|Q52KI8|SRRM1_MOUSE Serine/arginine repetitive matrix protein 1
           OS=Mus musculus GN=Srrm1 PE=1 SV=1
          Length = 946

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 1   SCSCCKSYQRKLMSPRPRLSARARTRKYSCKRRPTFRRK 117
           S S  ++  R     RPR   R+R+R YS +RRP+ RR+
Sbjct: 280 SKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRR 318


>sp|Q8IYB3|SRRM1_HUMAN Serine/arginine repetitive matrix protein 1
           OS=Homo sapiens GN=SRRM1 PE=1 SV=2
          Length = 904

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 1   SCSCCKSYQRKLMSPRPRLSARARTRKYSCKRRPTFRRK 117
           S S  ++  R     RPR   R+R+R YS +RRP+ RR+
Sbjct: 282 SKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRR 320


>sp|O08638|MYH11_MOUSE Myosin-11 OS=Mus musculus GN=Myh11 PE=1 SV=1
          Length = 1972

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +1

Query: 106  FRRKIAND*VTLYKTKKDILKDS*YLYNQLKASSSSSIFLEDKELTKDEWEKKLDIKIAH 285
            F+R  AN    L K+K+ + K++  L  +L+    +   +E K+       KKL++++  
Sbjct: 1215 FKRAKAN----LDKSKQTLEKENADLAGELRVLGQAKQEVEHKK-------KKLEVQLQD 1263

Query: 286  LESRIRDGNFHLERLQAQL-DEVH 354
            L+S+  DG    ER +A+L D+VH
Sbjct: 1264 LQSKCSDG----ERARAELSDKVH 1283


>sp|P32179|HAL2_YEAST 3'(2'),5'-bisphosphate nucleotidase
           OS=Saccharomyces cerevisiae GN=HAL2 PE=1 SV=1
          Length = 357

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -1

Query: 418 INHKETTPEQKETRSHVTSSNYAPHQVVLEA----FPSESYHLGSATPDGLS 275
           I+HK++T   K   S VT+ +YA   +++ A    FP +   +G  +  GLS
Sbjct: 29  ISHKDSTTITKNDNSPVTTGDYAAQTIIINAIKSNFPDDKV-VGEESSSGLS 79


>sp|A2A2Z9|AN18B_HUMAN Ankyrin repeat domain-containing protein 18B
           OS=Homo sapiens GN=ANKRD18B PE=2 SV=1
          Length = 1011

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
 Frame = +1

Query: 109 RRKIAND*VTLYKTKKDIL-KDS*YLYN-----QLKASSSSSIFLEDKELTKD--EWEKK 264
           +R IA     LY  K D L K+  Y+       ++ A+   S+ L ++ +TK   ++ ++
Sbjct: 340 KRDIAMLKEELYAIKNDSLRKEKKYIQEIKSITEINANFEKSVRLNEEMITKKVAQYSQQ 399

Query: 265 L-DIKI--AHLESRIRDGNFHLERLQAQLDEVHS 357
           L D+K   A L S++     + ERL+A+++ +HS
Sbjct: 400 LNDLKAENARLNSKLEKEKHNKERLEAEVESLHS 433


>sp|Q9VKK2|WDR59_DROME WD repeat-containing protein 59 homolog
           OS=Drosophila melanogaster GN=CG4705 PE=1 SV=2
          Length = 989

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 193 LKASSSSSIFLEDKELTKDEWEKKLDIKIAHLES 294
           +K+SSSS+ + + K+L  + W   LD++I  ++S
Sbjct: 820 VKSSSSSNTWQQLKQLRSNSWSDSLDLEIKQIQS 853
tr_hit_id Q9LH78
Definition tr|Q9LH78|Q9LH78_ARATH Similarity to transposon protein OS=Arabidopsis thaliana
Align length 65
Score (bit) 39.7
E-value 0.075
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912992|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_B08.
         (478 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LH78|Q9LH78_ARATH Similarity to transposon protein OS=Arabi...    40   0.075
tr|Q8GW77|Q8GW77_ARATH Putative uncharacterized protein At3g1478...    40   0.075
tr|Q6DD56|Q6DD56_XENLA LOC445881 protein (Fragment) OS=Xenopus l...    35   1.4  
tr|Q52L29|Q52L29_XENLA LOC445881 protein OS=Xenopus laevis GN=LO...    35   1.4  
tr|B0X6J0|B0X6J0_CULQU Putative uncharacterized protein OS=Culex...    34   3.2  
tr|Q02456|Q02456_SCHMA Myosin heavy chain OS=Schistosoma mansoni...    33   5.4  
tr|B1XVA5|B1XVA5_POLNS Putative uncharacterized protein OS=Polyn...    33   7.0  
tr|Q75J40|Q75J40_ORYSJ Putative kinase interacting protein (Puta...    33   7.0  
tr|Q10GA5|Q10GA5_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    33   7.0  
tr|B8AN33|B8AN33_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.0  
tr|B3MM37|B3MM37_DROAN GF14834 OS=Drosophila ananassae GN=GF1483...    33   7.0  
tr|A0BE61|A0BE61_PARTE Chromosome undetermined scaffold_101, who...    33   7.0  
tr|Q5JYW1|Q5JYW1_HUMAN Forkhead-associated (FHA) phosphopeptide ...    33   7.0  
tr|A6EBC3|A6EBC3_9SPHI Putative uncharacterized protein OS=Pedob...    33   9.2  

>tr|Q9LH78|Q9LH78_ARATH Similarity to transposon protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 167

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 23/65 (35%), Positives = 35/65 (53%)
 Frame = +1

Query: 139 LYKTKKDILKDS*YLYNQLKASSSSSIFLEDKELTKDEWEKKLDIKIAHLESRIRDGNFH 318
           +YK +  I KD  + Y  +KA  S  +F EDK L   E   KL+ KI  +E +++D +F 
Sbjct: 79  IYKEEVQIKKDKRFAYGSMKAVPS--LFYEDKYLETQEKLNKLEKKIEEMELKLKDVDFW 136

Query: 319 LERLQ 333
              +Q
Sbjct: 137 TNMMQ 141


>tr|Q8GW77|Q8GW77_ARATH Putative uncharacterized protein
           At3g14780/T21E2_3 (Putative uncharacterized protein
           At3g14780) OS=Arabidopsis thaliana GN=At3g14780/T21E2_3
           PE=2 SV=1
          Length = 347

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 23/65 (35%), Positives = 35/65 (53%)
 Frame = +1

Query: 139 LYKTKKDILKDS*YLYNQLKASSSSSIFLEDKELTKDEWEKKLDIKIAHLESRIRDGNFH 318
           +YK +  I KD  + Y  +KA  S  +F EDK L   E   KL+ KI  +E +++D +F 
Sbjct: 259 IYKEEVQIKKDKRFAYGSMKAVPS--LFYEDKYLETQEKLNKLEKKIEEMELKLKDVDFW 316

Query: 319 LERLQ 333
              +Q
Sbjct: 317 TNMMQ 321


>tr|Q6DD56|Q6DD56_XENLA LOC445881 protein (Fragment) OS=Xenopus
           laevis GN=LOC445881 PE=2 SV=1
          Length = 734

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +1

Query: 1   SCSCCKSYQRKLMSPRPRLSARARTRKYSCKRRPTFRRK 117
           S S  KS  R    PRPR   R+R+R YS +RRP+ RR+
Sbjct: 275 SRSKSKSKSRSPSHPRPRRRHRSRSRSYSPRRRPSPRRR 313


>tr|Q52L29|Q52L29_XENLA LOC445881 protein OS=Xenopus laevis
           GN=LOC445881 PE=2 SV=1
          Length = 872

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +1

Query: 1   SCSCCKSYQRKLMSPRPRLSARARTRKYSCKRRPTFRRK 117
           S S  KS  R    PRPR   R+R+R YS +RRP+ RR+
Sbjct: 275 SRSKSKSKSRSPSHPRPRRRHRSRSRSYSPRRRPSPRRR 313


>tr|B0X6J0|B0X6J0_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ014795 PE=4 SV=1
          Length = 743

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/56 (39%), Positives = 30/56 (53%)
 Frame = +1

Query: 184 YNQLKASSSSSIFLEDKELTKDEWEKKLDIKIAHLESRIRDGNFHLERLQAQLDEV 351
           +N LK SS   +F E +   K EWE+K D +   L S IRD N  +  ++ QL  V
Sbjct: 167 FNILKQSSDDELF-ELRRAVK-EWEQKYDYETGQLNSEIRDLNQQMMDIEDQLSMV 220


>tr|Q02456|Q02456_SCHMA Myosin heavy chain OS=Schistosoma mansoni
            GN=MYH PE=2 SV=1
          Length = 1940

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
 Frame = +1

Query: 25   QRKLMSPRPRLSARARTRKYSCKRRPTFRRKIAND*VTLYKTKKDILKDS*YLYNQLKAS 204
            +RK+ +  P L + A + K  C +              L KTK  +  +   L   ++ +
Sbjct: 1376 KRKMNAKIPALESEAESAKSKCGQ--------------LEKTKARLQGELEDLMVDVERA 1421

Query: 205  SSSSIFLEDKE----LTKDEWEKKLDIKIAHLESRIRDG---NFHLERLQAQLDEVH 354
            +  +  LE K+     T  EW+KK     A LE+  RD    +  + RL+AQL+EVH
Sbjct: 1422 NGLASQLERKQNNFNRTLAEWQKKYADSQAELENAQRDARGQSTEIFRLKAQLEEVH 1478


>tr|B1XVA5|B1XVA5_POLNS Putative uncharacterized protein
           OS=Polynucleobacter necessarius (strain STIR1)
           GN=Pnec_1109 PE=4 SV=1
          Length = 206

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = -2

Query: 462 SYIIGVFRSFRF*LQLTIRRLLLNKKRLGPMSQVLTMHLIKLCLKPFQVKVTISDPRLQM 283
           +Y+ GV       L L +   LL+  +  P++  L + +I LC  PF + + + DP    
Sbjct: 63  AYVRGVTGDLSIVLTLLLWSSLLSSSKPTPIAFKLAVAIIALCFYPFALGIGMLDP-YAW 121

Query: 282 GYLDVQFLLPLV 247
           GY  + FL+ ++
Sbjct: 122 GYGSISFLIAVL 133


>tr|Q75J40|Q75J40_ORYSJ Putative kinase interacting protein
           (Putative uncharacterized protein) OS=Oryza sativa
           subsp. japonica GN=OSJNBa0066H15.10 PE=4 SV=1
          Length = 1500

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
 Frame = +1

Query: 133 VTLYKTKKDILKDS*YLYNQLKASSSSSIFLEDKELTKDEWEKKLDIKIA-HLESR--IR 303
           V L K  + I K+S  L +Q+ +SSS  I L+D+ +T    +++L+  +  H++ +  ++
Sbjct: 310 VMLEKELEKIQKESTSLNDQIHSSSSMIIRLQDEIITMKNAQRRLEEDVCRHVDEKKTLQ 369

Query: 304 DGNFHLERLQAQLDEVHS 357
           +   HL+  ++ LD+ HS
Sbjct: 370 NELCHLKEDRSDLDKKHS 387


>tr|Q10GA5|Q10GA5_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os03g43684 PE=4 SV=1
          Length = 1535

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
 Frame = +1

Query: 133 VTLYKTKKDILKDS*YLYNQLKASSSSSIFLEDKELTKDEWEKKLDIKIA-HLESR--IR 303
           V L K  + I K+S  L +Q+ +SSS  I L+D+ +T    +++L+  +  H++ +  ++
Sbjct: 345 VMLEKELEKIQKESTSLNDQIHSSSSMIIRLQDEIITMKNAQRRLEEDVCRHVDEKKTLQ 404

Query: 304 DGNFHLERLQAQLDEVHS 357
           +   HL+  ++ LD+ HS
Sbjct: 405 NELCHLKEDRSDLDKKHS 422


>tr|B8AN33|B8AN33_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12743 PE=4 SV=1
          Length = 1465

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
 Frame = +1

Query: 133 VTLYKTKKDILKDS*YLYNQLKASSSSSIFLEDKELTKDEWEKKLDIKIA-HLESR--IR 303
           V L K  + I K+S  L +Q+ +SSS  I L+D+ +T    +++L+  +  H++ +  ++
Sbjct: 310 VMLEKELEKIQKESTSLNDQIHSSSSMIIRLQDEIITMKNAQRRLEEDVCRHVDEKKTLQ 369

Query: 304 DGNFHLERLQAQLDEVHS 357
           +   HL+  ++ LD+ HS
Sbjct: 370 NELCHLKEDRSDLDKKHS 387