BP913002
Clone id YMU001_000025_C07
Library
Length 283
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GAGCCACAAAGACTTAGTGACACTTTGAATCAAAATTGAATATTACAGAACCGCTCATTT
TGTATGGATCACGATTCATATTTTGGTGTTTTTCGAACACCAATCTCCAAATAATGTACA
AGATTGCCCCAACCTATTTCCATCGGTTTGACGGAGCTCGATTAATCTCTAGCAGCTGTT
CCAAAGAAACTGCCATCCATCGATCCCCTGACTGGGCATACAGTCTTTGTTGTGCATTGT
CCATGCAAACATTAGTGGATCCAAATCCATATACTTGAAAACC
■■Homology search results ■■ -
sp_hit_id P32214
Definition sp|P32214|CALCR_RAT Calcitonin receptor OS=Rattus norvegicus
Align length 62
Score (bit) 31.2
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913002|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_C07.
(283 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P32214|CALCR_RAT Calcitonin receptor OS=Rattus norvegicus GN=... 31 1.7
sp|Q60755|CALCR_MOUSE Calcitonin receptor OS=Mus musculus GN=Cal... 31 1.7
sp|O42478|TLE4_XENLA Transducin-like enhancer protein 4 OS=Xenop... 30 2.8
sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif dom... 29 6.4

>sp|P32214|CALCR_RAT Calcitonin receptor OS=Rattus norvegicus
GN=Calcr PE=2 SV=1
Length = 516

Score = 31.2 bits (69), Expect = 1.7
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3

Query: 87 CFSNTNLQIM-YKIAPTYFHRFDGARLISSSCSKETAIHRSPD----WA-YSLCCALSMQ 248
C+ +T +M Y+ P YF FD +S C + R PD W+ Y+LC A +
Sbjct: 81 CWDDTPAGVMSYQHCPDYFPDFDPTEKVSKYCDENGEWFRHPDSNRTWSNYTLCNAFTPD 140

Query: 249 TL 254
L
Sbjct: 141 KL 142


>sp|Q60755|CALCR_MOUSE Calcitonin receptor OS=Mus musculus GN=Calcr
PE=2 SV=1
Length = 515

Score = 31.2 bits (69), Expect = 1.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +3

Query: 117 YKIAPTYFHRFDGARLISSSCSKETAIHRSPD----WA-YSLCCALSMQTL 254
Y+ P YF FD A +S C + R PD W+ Y+LC A + + L
Sbjct: 92 YQHCPDYFPDFDTAEKVSKYCDENGEWFRHPDSNRTWSNYTLCNAFTSEKL 142


>sp|O42478|TLE4_XENLA Transducin-like enhancer protein 4 OS=Xenopus
laevis GN=tle4 PE=1 SV=2
Length = 772

Score = 30.4 bits (67), Expect = 2.8
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1

Query: 97 TPISK*CTRLPQPISIGLTELD*SLAAVPKKLPSIDPLTG-HTVFVVHCP 243
TP+SK T P+ + L VP K P +DPLTG T V CP
Sbjct: 319 TPVSKSNTPTPRTDAPTPGSNSSGLRPVPGKPPGVDPLTGLRTPMAVPCP 368


>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif
domain-containing protein 1B OS=Danio rerio GN=anks1b
PE=3 SV=1
Length = 1280

Score = 29.3 bits (64), Expect = 6.4
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +3

Query: 24 FESKLNITEPLILYGSRFIFWCFSNTNLQIMYKIAPTYFHRFDGARLISSSCSKETAIHR 203
FE+ N+++ + W +QI+ P++ +R+ + KETA+H
Sbjct: 80 FEASTNVSDSKGCFPLHLAAWRGDVDIVQILIHHGPSH------SRVNEQNLEKETALHC 133

Query: 204 SPDWAYSLCCALSMQTLVDPN 266
+ + +S + +Q L DP+
Sbjct: 134 AAQYGHSEVVRVLLQELTDPS 154


tr_hit_id A9T477
Definition tr|A9T477|A9T477_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 50
Score (bit) 54.7
E-value 2.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913002|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_C07.
(283 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9T477|A9T477_PHYPA Predicted protein OS=Physcomitrella paten... 55 2e-06
tr|A9TQV6|A9TQV6_PHYPA Predicted protein OS=Physcomitrella paten... 54 4e-06
tr|A9T479|A9T479_PHYPA Predicted protein (Fragment) OS=Physcomit... 52 2e-05
tr|A7PAZ3|A7PAZ3_VITVI Chromosome chr16 scaffold_10, whole genom... 50 7e-05
tr|Q2QM64|Q2QM64_ORYSJ Os12g0615800 protein OS=Oryza sativa subs... 48 3e-04
tr|A3CJG3|A3CJG3_ORYSJ Putative uncharacterized protein OS=Oryza... 48 3e-04
tr|A2ZMR5|A2ZMR5_ORYSI Putative uncharacterized protein OS=Oryza... 48 3e-04
tr|B4FJL8|B4FJL8_MAIZE Putative uncharacterized protein OS=Zea m... 44 0.003
tr|A8JH28|A8JH28_CHLRE Predicted protein (Fragment) OS=Chlamydom... 43 0.009
tr|A1XDC4|A1XDC4_CHLRE STIP OS=Chlamydomonas reinhardtii PE=2 SV=1 43 0.009
tr|Q9SLC6|Q9SLC6_ARATH Putative uncharacterized protein At2g4233... 42 0.020
tr|Q9SHG6|Q9SHG6_ARATH Similar to tuftelin-interacting protein O... 40 0.076
tr|Q8LEM9|Q8LEM9_ARATH Putative uncharacterized protein OS=Arabi... 40 0.076
tr|Q56W84|Q56W84_ARATH Tuftelin-interacting-like protein OS=Arab... 40 0.076
tr|Q00VD2|Q00VD2_OSTTA Tuftelin-interacting protein TIP39, conta... 38 0.29
tr|A4S759|A4S759_OSTLU Predicted protein OS=Ostreococcus lucimar... 35 1.9
tr|B7G2H8|B7G2H8_PHATR Predicted protein OS=Phaeodactylum tricor... 33 9.3

>tr|A9T477|A9T477_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_140072 PE=4 SV=1
Length = 834

Score = 54.7 bits (130), Expect = 2e-06
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = -1

Query: 283 GFQVYGFGSTNVCMDNAQQRLYAQSGDRWMAVSLEQLLEINRA-PSNRWK 137
G QVY FG+ +V +DNA+Q + AQ+GD W +V L Q+LE++R+ +RWK
Sbjct: 785 GLQVYSFGAVSVVIDNAKQSILAQTGDGWKSVHLGQILEMHRSRGGSRWK 834


>tr|A9TQV6|A9TQV6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_197363 PE=4 SV=1
Length = 835

Score = 53.9 bits (128), Expect = 4e-06
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = -1

Query: 283 GFQVYGFGSTNVCMDNAQQRLYAQSGDRWMAVSLEQLLEINRAPS-NRWK 137
G QVY FG+ +V +DNA+Q ++AQ+G+ W V Q+LE++R+ S +RWK
Sbjct: 786 GLQVYSFGAVSVVIDNAKQSIFAQTGEGWKQVHFGQILEMHRSRSGSRWK 835


>tr|A9T479|A9T479_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_19603 PE=4 SV=1
Length = 59

Score = 51.6 bits (122), Expect = 2e-05
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = -1

Query: 283 GFQVYGFGSTNVCMDNAQQRLYAQSGDRWMAVSLEQLLEINRA 155
G QVY FG+ +V +DNA+Q + AQ+GD W +V L Q+LE++R+
Sbjct: 17 GLQVYSFGAVSVVIDNAKQSILAQTGDGWKSVHLGQILEMHRS 59


>tr|A7PAZ3|A7PAZ3_VITVI Chromosome chr16 scaffold_10, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00013882001
PE=4 SV=1
Length = 863

Score = 49.7 bits (117), Expect = 7e-05
Identities = 19/42 (45%), Positives = 33/42 (78%)
Frame = -1

Query: 283 GFQVYGFGSTNVCMDNAQQRLYAQSGDRWMAVSLEQLLEINR 158
G Q+YGFG+ ++ +D+ Q+++AQ +RW V+LEQLLE+++
Sbjct: 817 GHQIYGFGNISIIVDSLNQKVFAQHEERWSLVTLEQLLEMHK 858


>tr|Q2QM64|Q2QM64_ORYSJ Os12g0615800 protein OS=Oryza sativa subsp.
japonica GN=Os12g0615800 PE=2 SV=1
Length = 844

Score = 47.8 bits (112), Expect = 3e-04
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = -1

Query: 283 GFQVYGFGSTNVCMDNAQQRLYAQ---SGDRWMAVSLEQLLEINRAPSNR 143
G VY FG+ ++C+D+ ++ LYAQ +RW AVSL QL+E+NR R
Sbjct: 795 GMPVYEFGTVSICIDSVKRLLYAQLQEGIERWSAVSLTQLIEMNRKARQR 844


>tr|A3CJG3|A3CJG3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_035435 PE=4 SV=1
Length = 837

Score = 47.8 bits (112), Expect = 3e-04
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = -1

Query: 283 GFQVYGFGSTNVCMDNAQQRLYAQ---SGDRWMAVSLEQLLEINRAPSNR 143
G VY FG+ ++C+D+ ++ LYAQ +RW AVSL QL+E+NR R
Sbjct: 788 GMPVYEFGTVSICIDSVKRLLYAQLQEGIERWSAVSLTQLIEMNRKARQR 837


>tr|A2ZMR5|A2ZMR5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_39121 PE=4 SV=1
Length = 841

Score = 47.8 bits (112), Expect = 3e-04
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = -1

Query: 283 GFQVYGFGSTNVCMDNAQQRLYAQ---SGDRWMAVSLEQLLEINRAPSNR 143
G VY FG+ ++C+D+ ++ LYAQ +RW AVSL QL+E+NR R
Sbjct: 792 GMPVYEFGTVSICIDSVKRLLYAQLQEGIERWSAVSLTQLIEMNRKARQR 841


>tr|B4FJL8|B4FJL8_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 526

Score = 44.3 bits (103), Expect = 0.003
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Frame = -1

Query: 283 GFQVYGFGSTNVCMDNAQQRLYAQ---SGDRWMAVSLEQLLEINR 158
G VY FG+ ++C+D+ ++ LYAQ DRW V+L QL+++NR
Sbjct: 477 GMPVYEFGTVSICIDSVKRLLYAQLQEGIDRWSPVTLTQLMDMNR 521


>tr|A8JH28|A8JH28_CHLRE Predicted protein (Fragment)
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_108447 PE=4
SV=1
Length = 786

Score = 42.7 bits (99), Expect = 0.009
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -1

Query: 283 GFQVYGFGSTNVCMDNAQQRLYAQ-SGDRWMAVSLEQLLEINRAPSNR 143
G QVYGFG +V +DN + AQ G RW VSL+QL+++ A + +
Sbjct: 739 GLQVYGFGHVSVILDNINGMVRAQLPGSRWAPVSLDQLMQLAAARAGK 786


>tr|A1XDC4|A1XDC4_CHLRE STIP OS=Chlamydomonas reinhardtii PE=2 SV=1
Length = 844

Score = 42.7 bits (99), Expect = 0.009
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -1

Query: 283 GFQVYGFGSTNVCMDNAQQRLYAQ-SGDRWMAVSLEQLLEINRAPSNR 143
G QVYGFG +V +DN + AQ G RW VSL+QL+++ A + +
Sbjct: 797 GLQVYGFGHVSVILDNINGMVRAQLPGSRWAPVSLDQLMQLAAARAGK 844