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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913004
Clone id YMU001_000025_C09
Library
Length 273
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGTGGCTCCATTTAATTCCTTTCACTCTCCTTGGGCCCTCTAAAATAAAATTCTGGAGC
TTAGTTTCAAAACATTAGAGTACCTCTGAAGATCAAGTTATAAAAGCACTCACCCAGATG
GAAAATTGCATTTCCATACTTCATAGACACAAACCGGAAGTAGTCCCTCCATATGAGTTC
AAATAGCACCCTGTTAATGATGATAAGTCCTTCTCTCACAAGAGAACACACAATTTTGAA
ATGAAGCACATATGATTTACCAATATGTGGACT
■■Homology search results ■■ -
sp_hit_id Q651U1
Definition sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica
Align length 26
Score (bit) 55.5
E-value 8.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913004|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_C09.
         (273 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondr...    55   8e-08
sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondr...    51   2e-06
sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-das...    47   3e-05
sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-...    45   9e-05
sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondr...    45   9e-05
sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (str...    44   2e-04
sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondr...    44   3e-04
sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus ...    40   0.004
sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica...    40   0.005
sp|Q8LB72|PHR2_ARATH Blue-light photoreceptor PHR2 OS=Arabidopsi...    37   0.031
sp|Q7SI68|CRYD_NEUCR Putative cryptochrome DASH, mitochondrial O...    32   0.76 
sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis...    32   0.76 
sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae GN=cry...    31   1.7  
sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis ...    31   1.7  
sp|Q4I1Q6|CRYD_GIBZE Putative cryptochrome DASH OS=Gibberella ze...    30   2.9  
sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus no...    29   8.4  
sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sa...    29   8.4  
sp|Q87JP5|CRYD_VIBPA Cryptochrome DASH OS=Vibrio parahaemolyticu...    29   8.4  

>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial
           OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1
          Length = 582

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           VLFELIWRDYFRF+S KYGN+IFHLG
Sbjct: 384 VLFELIWRDYFRFISAKYGNSIFHLG 409


>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial
           OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2
          Length = 569

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           VLFELIWRDYFRF+S+K GN++FHLG
Sbjct: 366 VLFELIWRDYFRFLSIKCGNSLFHLG 391


>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash
           PE=2 SV=2
          Length = 520

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 17/25 (68%), Positives = 24/25 (96%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHL 115
           V+FEL+WRDYF+FV++KYGN IF++
Sbjct: 289 VIFELLWRDYFKFVALKYGNRIFYM 313


>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis
           GN=cry-dash PE=2 SV=1
          Length = 523

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHL 115
           V+FEL+WRDYFRFV++KYG  IF L
Sbjct: 290 VIFELLWRDYFRFVALKYGRRIFFL 314


>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial
           OS=Ostreococcus tauri GN=Ot01g06320 PE=3 SV=1
          Length = 546

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 17/25 (68%), Positives = 23/25 (92%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHL 115
           V+FELIWRD+F+F ++K+GN IFHL
Sbjct: 317 VIFELIWRDFFKFFALKHGNKIFHL 341


>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain
           PCC 6803) GN=cry PE=1 SV=2
          Length = 489

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 16/26 (61%), Positives = 23/26 (88%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           ++FEL+WRD+FRFV+ KYGN +F+ G
Sbjct: 286 LIFELLWRDFFRFVAQKYGNKLFNRG 311


>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial
           OS=Solanum lycopersicum GN=CRYD PE=3 SV=2
          Length = 577

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           VLFELIWRDYFRF+S+K  N +F  G
Sbjct: 374 VLFELIWRDYFRFLSIKLANLLFQAG 399


>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus
           GN=cry PE=3 SV=1
          Length = 500

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 13/24 (54%), Positives = 22/24 (91%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFH 118
           ++FEL+WRDYFRF++ K+G+ +F+
Sbjct: 284 LIFELLWRDYFRFIAAKHGDRLFY 307


>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica
           GN=cry PE=3 SV=2
          Length = 488

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           ++FEL+WRDYFR++S K+G  +F  G
Sbjct: 283 MIFELLWRDYFRWISRKHGATLFRAG 308


>sp|Q8LB72|PHR2_ARATH Blue-light photoreceptor PHR2 OS=Arabidopsis
           thaliana GN=PHR2 PE=2 SV=2
          Length = 447

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 12/24 (50%), Positives = 21/24 (87%)
 Frame = -1

Query: 198 INRVLFELIWRDYFRFVSMKYGNA 127
           +N +++EL+WRD+FRF++ KY +A
Sbjct: 407 LNWLMYELLWRDFFRFITKKYSSA 430
tr_hit_id A9U403
Definition tr|A9U403|A9U403_PHYPA Photolyase-like protein OS=Physcomitrella patens subsp. patens
Align length 26
Score (bit) 57.8
E-value 6.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913004|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_C09.
         (273 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U403|A9U403_PHYPA Photolyase-like protein OS=Physcomitrella...    58   6e-08
tr|B8A343|B8A343_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|Q0DAD1|Q0DAD1_ORYSJ Os06g0661800 protein OS=Oryza sativa subs...    55   1e-06
tr|B8B106|B8B106_ORYSI Putative uncharacterized protein OS=Oryza...    55   1e-06
tr|A3BEA9|A3BEA9_ORYSJ Putative uncharacterized protein OS=Oryza...    55   1e-06
tr|A7P504|A7P504_VITVI Chromosome chr4 scaffold_6, whole genome ...    52   2e-05
tr|A5C9X1|A5C9X1_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|Q1VSI8|Q1VSI8_9FLAO Deoxyribodipyrimidine photolyase OS=Psych...    46   0.001
tr|Q10W56|Q10W56_TRIEI Deoxyribodipyrimidine photo-lyase type I ...    45   0.001
tr|A3UBB9|A3UBB9_9FLAO Probable bacterial cryptochrome OS=Crocei...    45   0.001
tr|A2U0A6|A2U0A6_9FLAO Cryptochrome, DASH family OS=Polaribacter...    45   0.001
tr|A4RS79|A4RS79_OSTLU Predicted protein OS=Ostreococcus lucimar...    45   0.001
tr|A7SYS9|A7SYS9_NEMVE Predicted protein OS=Nematostella vectens...    45   0.002
tr|A3J0E7|A3J0E7_9FLAO Probable bacterial cryptochrome OS=Flavob...    44   0.003
tr|Q4BVE9|Q4BVE9_CROWT Deoxyribodipyrimidine photolyase OS=Croco...    44   0.004
tr|A2TQD4|A2TQD4_9FLAO Probable bacterial cryptochrome OS=Dokdon...    44   0.005
tr|A0YNC9|A0YNC9_9CYAN Probable bacterial cryptochrome OS=Lyngby...    44   0.005
tr|Q26F23|Q26F23_9BACT Deoxyribodipyrimidine photo-lyase OS=Flav...    43   0.007
tr|B4WS74|B4WS74_9SYNE Cryptochrome, DASH family OS=Synechococcu...    43   0.007
tr|A4BYS7|A4BYS7_9FLAO Probable bacterial cryptochrome OS=Polari...    43   0.007
tr|A0M4X6|A0M4X6_GRAFK Cryptochrome-like DNA photolyase family p...    42   0.012
tr|A9UXR7|A9UXR7_MONBE Predicted protein OS=Monosiga brevicollis...    42   0.012
tr|B1WSS8|B1WSS8_CYAA5 DNA photolyase OS=Cyanothece (strain ATCC...    42   0.016
tr|B4AXR0|B4AXR0_9CHRO Cryptochrome, DASH family OS=Cyanothece s...    42   0.016
tr|A9DMU9|A9DMU9_9FLAO Deoxyribodipyrimidine photolyase (Photore...    42   0.016
tr|A3XGD4|A3XGD4_9FLAO Probable bacterial cryptochrome OS=Leeuwe...    42   0.016
tr|A3ISS7|A3ISS7_9CHRO Probable bacterial cryptochrome OS=Cyanot...    42   0.016
tr|A8IAH1|A8IAH1_CHLRE Cryptochrome DASH1 (Fragment) OS=Chlamydo...    42   0.016
tr|B7JXM8|B7JXM8_SYNP8 Cryptochrome, DASH family OS=Synechococcu...    42   0.020
tr|B4BVE7|B4BVE7_9CHRO Cryptochrome, DASH family OS=Cyanothece s...    42   0.020

>tr|A9U403|A9U403_PHYPA Photolyase-like protein OS=Physcomitrella
           patens subsp. patens GN=Cry3 PE=4 SV=1
          Length = 557

 Score = 57.8 bits (138), Expect(2) = 6e-08
 Identities = 25/26 (96%), Positives = 26/26 (100%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           VLFELIWRDYFRFVS+KYGNAIFHLG
Sbjct: 357 VLFELIWRDYFRFVSIKYGNAIFHLG 382



 Score = 22.7 bits (47), Expect(2) = 6e-08
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 50  FILEGPRRVKGIKWS 6
           F L GPR+V G +WS
Sbjct: 379 FHLGGPRKVVGKRWS 393


>tr|B8A343|B8A343_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 550

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           VLFELIWRDYFRF+S KYGNAIFHLG
Sbjct: 351 VLFELIWRDYFRFLSAKYGNAIFHLG 376


>tr|Q0DAD1|Q0DAD1_ORYSJ Os06g0661800 protein OS=Oryza sativa subsp.
           japonica GN=Os06g0661800 PE=4 SV=1
          Length = 547

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           VLFELIWRDYFRF+S KYGN+IFHLG
Sbjct: 349 VLFELIWRDYFRFISAKYGNSIFHLG 374


>tr|B8B106|B8B106_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24002 PE=4 SV=1
          Length = 547

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           VLFELIWRDYFRF+S KYGN+IFHLG
Sbjct: 349 VLFELIWRDYFRFISAKYGNSIFHLG 374


>tr|A3BEA9|A3BEA9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021381 PE=4 SV=1
          Length = 582

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           VLFELIWRDYFRF+S KYGN+IFHLG
Sbjct: 384 VLFELIWRDYFRFISAKYGNSIFHLG 409


>tr|A7P504|A7P504_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032351001
           PE=4 SV=1
          Length = 564

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           VLFELIWRDYFRF+S+KY N++FHLG
Sbjct: 362 VLFELIWRDYFRFLSVKYRNSLFHLG 387


>tr|A5C9X1|A5C9X1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_014519 PE=4 SV=1
          Length = 584

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           VLFELIWRDYFRF+S+KY N++FHLG
Sbjct: 382 VLFELIWRDYFRFLSVKYRNSLFHLG 407


>tr|Q1VSI8|Q1VSI8_9FLAO Deoxyribodipyrimidine photolyase
           OS=Psychroflexus torquis ATCC 700755 GN=P700755_14575
           PE=3 SV=1
          Length = 436

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 16/26 (61%), Positives = 24/26 (92%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHLG 112
           ++FELIWRDYF+++S+K+GN IF +G
Sbjct: 286 LIFELIWRDYFKYISLKHGNKIFQIG 311


>tr|Q10W56|Q10W56_TRIEI Deoxyribodipyrimidine photo-lyase type I
           OS=Trichodesmium erythraeum (strain IMS101) GN=Tery_4538
           PE=3 SV=1
          Length = 498

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFH 118
           ++FELIWRDYFRF+  K+GN IFH
Sbjct: 284 LIFELIWRDYFRFICQKHGNKIFH 307


>tr|A3UBB9|A3UBB9_9FLAO Probable bacterial cryptochrome
           OS=Croceibacter atlanticus HTCC2559 GN=CA2559_07806 PE=3
           SV=1
          Length = 421

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 17/25 (68%), Positives = 23/25 (92%)
 Frame = -1

Query: 189 VLFELIWRDYFRFVSMKYGNAIFHL 115
           ++FELIWRDYF ++S+KYGN+IF L
Sbjct: 271 MIFELIWRDYFMYISLKYGNSIFKL 295