BP913006
Clone id YMU001_000025_D01
Library
Length 462
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTTTGATCCACGCAGTCTCTATCTCTGGTAAGTGCTAATTTTTGGTGGCAGATACCTCCC
GCCATGTTGTATCATGTGCATGTAGCATCTGAACGCTCCGTGGATGAATGGCATGCGACA
CATCATGTCCCCCAAGGTTCCCCCATTGTAGTATGGACTCAGTATGGAAAGATTGTGATC
CAGGGAGCCTCGGTGGTAAAGCCAATGCATCTTACAACGGAGAAGTGAAGTGTTTGCATT
AATTTCTCTATCTGAAAGCTATCAAATTTTGCCTCACTCCCTCCCTTGTAACATTTTCCT
ACATATGTAATGTCCTCTAGAAAGAAAGAAATGCCTTTGATGGTGTATAATGTCCATACA
CCAAAAGAGCCTGCTCTAACCCTTGCACCTTCCACCTTCCATCAGGGCCTCATGGAGAAT
GCCAATCAAATGAGCACACTTGGCATTCAATGTTGTGCGCAT
■■Homology search results ■■ -
sp_hit_id Q75CQ8
Definition sp|Q75CQ8|FRE8_ASHGO Probable ferric reductase transmembrane component OS=Ashbya gossypii
Align length 28
Score (bit) 30.8
E-value 3.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913006|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_D01.
(462 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q75CQ8|FRE8_ASHGO Probable ferric reductase transmembrane com... 31 3.0
sp|A1RQ95|GPMI_SHESW 2,3-bisphosphoglycerate-independent phospho... 30 3.9
sp|A4Y1E3|GPMI_SHEPC 2,3-bisphosphoglycerate-independent phospho... 30 3.9
sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase compon... 30 6.7
sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase comp... 30 6.7
sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase comp... 30 6.7
sp|A1WYT6|LPXC_HALHL UDP-3-O-[3-hydroxymyristoyl] N-acetylglucos... 29 8.5
sp|P20393|NR1D1_HUMAN Nuclear receptor subfamily 1 group D membe... 29 8.7
sp|Q12BZ9|HEMH_POLSJ Ferrochelatase OS=Polaromonas sp. (strain J... 29 8.7

>sp|Q75CQ8|FRE8_ASHGO Probable ferric reductase transmembrane
component OS=Ashbya gossypii GN=FRE8 PE=3 SV=1
Length = 686

Score = 30.8 bits (68), Expect = 3.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1

Query: 363 WCMDIIHHQRHFFLSRGHYICRKMLQGR 280
W ++HH RH + R +CRK++Q R
Sbjct: 51 WVFRVMHHWRHHVMRRHGAMCRKLVQQR 78


>sp|A1RQ95|GPMI_SHESW 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase OS=Shewanella sp. (strain
W3-18-1) GN=gpmI PE=3 SV=1
Length = 514

Score = 30.4 bits (67), Expect = 3.9
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = -1

Query: 258 LSDREINANTSLLRCKMHWLYHRGSLDHNLSILSPYYNGGTLG-----DMMCRMPFIHGA 94
+SD E N +L + + G H + +LSP GG + MCRM GA
Sbjct: 88 ISDHEFETNPALCDA-VDSAINAGGAVHIMGLLSP---GGVHSHEEHIEAMCRMAVARGA 143

Query: 93 FRCYMHMIQHGGRYLPPK 40
+ Y+H GR PP+
Sbjct: 144 TKVYLHAFL-DGRDTPPR 160


>sp|A4Y1E3|GPMI_SHEPC 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase OS=Shewanella putrefaciens
(strain CN-32 / ATCC BAA-453) GN=gpmI PE=3 SV=1
Length = 514

Score = 30.4 bits (67), Expect = 3.9
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = -1

Query: 258 LSDREINANTSLLRCKMHWLYHRGSLDHNLSILSPYYNGGTLG-----DMMCRMPFIHGA 94
+SD E N +L + + G H + +LSP GG + MCRM GA
Sbjct: 88 ISDHEFETNPALCDA-VDSAINAGGAVHIMGLLSP---GGVHSHEEHIEAMCRMAVARGA 143

Query: 93 FRCYMHMIQHGGRYLPPK 40
+ Y+H GR PP+
Sbjct: 144 TKVYLHAFL-DGRDTPPR 160


>sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase component
A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1
Length = 650

Score = 29.6 bits (65), Expect = 6.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -1

Query: 174 NLSILSPYYNGGTLGDMMCRMPFIHGAFRCYMHMIQ 67
N L P Y G L CRM + G C H +Q
Sbjct: 367 NTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQ 402


>sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase
component A 1 OS=Mus musculus GN=Chm PE=2 SV=1
Length = 665

Score = 29.6 bits (65), Expect = 6.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -1

Query: 174 NLSILSPYYNGGTLGDMMCRMPFIHGAFRCYMHMIQ 67
N L P Y G L CRM + G C H +Q
Sbjct: 382 NTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQ 417


>sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase
component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3
Length = 653

Score = 29.6 bits (65), Expect = 6.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -1

Query: 174 NLSILSPYYNGGTLGDMMCRMPFIHGAFRCYMHMIQ 67
N L P Y G L CRM + G C H +Q
Sbjct: 370 NTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQ 405


>sp|A1WYT6|LPXC_HALHL UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=lpxC PE=3 SV=1
Length = 300

Score = 29.3 bits (64), Expect = 8.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3

Query: 142 GNLGGHDVSHAIHPRSVQMLHAHDTTWREVSATKN*HLP 26
G+ GH HA++ R ++ L H+ W EV+ + LP
Sbjct: 253 GSFHGHKSGHALNNRLLRKLLEHEHAWEEVTFEELDELP 291


>sp|P20393|NR1D1_HUMAN Nuclear receptor subfamily 1 group D member 1
OS=Homo sapiens GN=NR1D1 PE=1 SV=1
Length = 614

Score = 29.3 bits (64), Expect = 8.7
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -1

Query: 363 WCMDIIHHQRHFFLSRGHYICRKMLQGRE*GKI**LSDREINANTSLLRCKMHWLYH 193
W HH H S GH +C + GK S R+ N+ LL C M+ H
Sbjct: 369 WPPGPAHHSCHQSNSNGHRLCPTHVYAAPEGKAPANSPRQGNSKNVLLACPMNMYPH 425


>sp|Q12BZ9|HEMH_POLSJ Ferrochelatase OS=Polaromonas sp. (strain
JS666 / ATCC BAA-500) GN=hemH PE=3 SV=1
Length = 367

Score = 29.3 bits (64), Expect = 8.7
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +1

Query: 43 WWQIPPAMLYHVHVASERSVDEWHATHHVPQGSPIVVWTQYGKIVIQG 186
WW I ++ + + ++S ++ A+ P+GSP+ VWTQ ++++G
Sbjct: 60 WWLILHGII--LRLRPKKSATKY-ASIWTPEGSPLKVWTQKQALMLRG 104


tr_hit_id Q8IQ18
Definition tr|Q8IQ18|Q8IQ18_DROME Dumpy OS=Drosophila melanogaster
Align length 33
Score (bit) 33.9
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913006|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_D01.
(462 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8IQ18|Q8IQ18_DROME Dumpy OS=Drosophila melanogaster GN=dp PE... 34 4.1
tr|B4Q309|B4Q309_DROSI GD22701 OS=Drosophila simulans GN=GD22701... 34 4.1
tr|B4NYY8|B4NYY8_DROYA GE14706 OS=Drosophila yakuba GN=GE14706 P... 34 4.1
tr|B4I3A6|B4I3A6_DROSE GM18084 OS=Drosophila sechellia GN=GM1808... 34 4.1
tr|B3ED12|B3ED12_CHLL2 2-oxoglutarate dehydrogenase, E1 subunit ... 33 5.4
tr|Q2A0X1|Q2A0X1_9LAMI Phytochrome A (Fragment) OS=Hyobanche rub... 33 7.0
tr|B4MTX1|B4MTX1_DROWI GK23922 OS=Drosophila willistoni GN=GK239... 33 9.2

>tr|Q8IQ18|Q8IQ18_DROME Dumpy OS=Drosophila melanogaster GN=dp PE=1 SV=4
Length = 22971

Score = 33.9 bits (76), Expect = 4.1
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = +3

Query: 351 CPYTKRA----CSNPCTFHLPSGPHGECQSNEH 437
CP K C NPC +H P P EC++ H
Sbjct: 22061 CPTDKTCQNEQCVNPCVYHNPCAPRAECRAQNH 22093


>tr|B4Q309|B4Q309_DROSI GD22701 OS=Drosophila simulans GN=GD22701 PE=4
SV=1
Length = 3703

Score = 33.9 bits (76), Expect = 4.1
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = +3

Query: 351 CPYTKRA----CSNPCTFHLPSGPHGECQSNEH 437
CP K C NPC +H P P EC++ H
Sbjct: 2793 CPTDKTCQNEQCVNPCVYHNPCAPRAECRAQNH 2825


>tr|B4NYY8|B4NYY8_DROYA GE14706 OS=Drosophila yakuba GN=GE14706 PE=4
SV=1
Length = 5806

Score = 33.9 bits (76), Expect = 4.1
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = +3

Query: 351 CPYTKRA----CSNPCTFHLPSGPHGECQSNEH 437
CP K C NPC +H P P EC++ H
Sbjct: 4896 CPTDKTCQNEQCVNPCVYHNPCAPRAECRAQNH 4928


>tr|B4I3A6|B4I3A6_DROSE GM18084 OS=Drosophila sechellia GN=GM18084 PE=4
SV=1
Length = 14551

Score = 33.9 bits (76), Expect = 4.1
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = +3

Query: 351 CPYTKRA----CSNPCTFHLPSGPHGECQSNEH 437
CP K C NPC +H P P EC++ H
Sbjct: 13641 CPKDKTCQNEQCVNPCVYHNPCAPRAECRAQSH 13673


>tr|B3ED12|B3ED12_CHLL2 2-oxoglutarate dehydrogenase, E1 subunit
OS=Chlorobium limicola (strain DSM 245 / NBRC 103803)
GN=Clim_1377 PE=4 SV=1
Length = 943

Score = 33.5 bits (75), Expect = 5.4
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -1

Query: 390 RCKG*SRLFWCMDIIHHQRHF-FLSRGHYICRKMLQGRE*GKI**LSDREINANTSLLRC 214
R G + WC D +Q ++ FL HYI M+ G++ G + R +A+T+
Sbjct: 866 RYPGLKEIVWCQDEPKNQGYWRFLQ--HYIMNAMIPGQQFG----YAGRPASASTACGYA 919

Query: 213 KMHWLYHRGSLDHNLSILSPYYN 145
MH L + LD S +YN
Sbjct: 920 AMHALQQQALLDQAYGEFSVFYN 942


>tr|Q2A0X1|Q2A0X1_9LAMI Phytochrome A (Fragment) OS=Hyobanche rubra
GN=phya PE=4 SV=1
Length = 618

Score = 33.1 bits (74), Expect = 7.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Frame = -3

Query: 166 HTESILQWGN----LGGHDVSHAIHPRS-----VQMLHAHDTTWRE 56
HTE+ +QWG +GG D +HPRS ++++ A WR+
Sbjct: 363 HTEAEVQWGGAKHEMGGEDDDRKMHPRSSFKAFLEVVKARSVPWRD 408


>tr|B4MTX1|B4MTX1_DROWI GK23922 OS=Drosophila willistoni GN=GK23922
PE=4 SV=1
Length = 3792

Score = 32.7 bits (73), Expect = 9.2
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Frame = +3

Query: 351 CPYTKRA----CSNPCTFHLPSGPHGECQSNEH 437
CP K C NPC +H P P EC+ H
Sbjct: 2881 CPTDKTCQNEQCVNPCIYHNPCSPRAECRPQNH 2913