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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913006
Clone id YMU001_000025_D01
Library
Length 462
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTTGATCCACGCAGTCTCTATCTCTGGTAAGTGCTAATTTTTGGTGGCAGATACCTCCC
GCCATGTTGTATCATGTGCATGTAGCATCTGAACGCTCCGTGGATGAATGGCATGCGACA
CATCATGTCCCCCAAGGTTCCCCCATTGTAGTATGGACTCAGTATGGAAAGATTGTGATC
CAGGGAGCCTCGGTGGTAAAGCCAATGCATCTTACAACGGAGAAGTGAAGTGTTTGCATT
AATTTCTCTATCTGAAAGCTATCAAATTTTGCCTCACTCCCTCCCTTGTAACATTTTCCT
ACATATGTAATGTCCTCTAGAAAGAAAGAAATGCCTTTGATGGTGTATAATGTCCATACA
CCAAAAGAGCCTGCTCTAACCCTTGCACCTTCCACCTTCCATCAGGGCCTCATGGAGAAT
GCCAATCAAATGAGCACACTTGGCATTCAATGTTGTGCGCAT
■■Homology search results ■■ -
sp_hit_id Q75CQ8
Definition sp|Q75CQ8|FRE8_ASHGO Probable ferric reductase transmembrane component OS=Ashbya gossypii
Align length 28
Score (bit) 30.8
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913006|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_D01.
         (462 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q75CQ8|FRE8_ASHGO Probable ferric reductase transmembrane com...    31   3.0  
sp|A1RQ95|GPMI_SHESW 2,3-bisphosphoglycerate-independent phospho...    30   3.9  
sp|A4Y1E3|GPMI_SHEPC 2,3-bisphosphoglycerate-independent phospho...    30   3.9  
sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase compon...    30   6.7  
sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase comp...    30   6.7  
sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase comp...    30   6.7  
sp|A1WYT6|LPXC_HALHL UDP-3-O-[3-hydroxymyristoyl] N-acetylglucos...    29   8.5  
sp|P20393|NR1D1_HUMAN Nuclear receptor subfamily 1 group D membe...    29   8.7  
sp|Q12BZ9|HEMH_POLSJ Ferrochelatase OS=Polaromonas sp. (strain J...    29   8.7  

>sp|Q75CQ8|FRE8_ASHGO Probable ferric reductase transmembrane
           component OS=Ashbya gossypii GN=FRE8 PE=3 SV=1
          Length = 686

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 363 WCMDIIHHQRHFFLSRGHYICRKMLQGR 280
           W   ++HH RH  + R   +CRK++Q R
Sbjct: 51  WVFRVMHHWRHHVMRRHGAMCRKLVQQR 78


>sp|A1RQ95|GPMI_SHESW 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Shewanella sp. (strain
           W3-18-1) GN=gpmI PE=3 SV=1
          Length = 514

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = -1

Query: 258 LSDREINANTSLLRCKMHWLYHRGSLDHNLSILSPYYNGGTLG-----DMMCRMPFIHGA 94
           +SD E   N +L    +    + G   H + +LSP   GG        + MCRM    GA
Sbjct: 88  ISDHEFETNPALCDA-VDSAINAGGAVHIMGLLSP---GGVHSHEEHIEAMCRMAVARGA 143

Query: 93  FRCYMHMIQHGGRYLPPK 40
            + Y+H     GR  PP+
Sbjct: 144 TKVYLHAFL-DGRDTPPR 160


>sp|A4Y1E3|GPMI_SHEPC 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Shewanella putrefaciens
           (strain CN-32 / ATCC BAA-453) GN=gpmI PE=3 SV=1
          Length = 514

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = -1

Query: 258 LSDREINANTSLLRCKMHWLYHRGSLDHNLSILSPYYNGGTLG-----DMMCRMPFIHGA 94
           +SD E   N +L    +    + G   H + +LSP   GG        + MCRM    GA
Sbjct: 88  ISDHEFETNPALCDA-VDSAINAGGAVHIMGLLSP---GGVHSHEEHIEAMCRMAVARGA 143

Query: 93  FRCYMHMIQHGGRYLPPK 40
            + Y+H     GR  PP+
Sbjct: 144 TKVYLHAFL-DGRDTPPR 160


>sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase component
           A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1
          Length = 650

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 174 NLSILSPYYNGGTLGDMMCRMPFIHGAFRCYMHMIQ 67
           N   L P Y  G L    CRM  + G   C  H +Q
Sbjct: 367 NTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQ 402


>sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase
           component A 1 OS=Mus musculus GN=Chm PE=2 SV=1
          Length = 665

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 174 NLSILSPYYNGGTLGDMMCRMPFIHGAFRCYMHMIQ 67
           N   L P Y  G L    CRM  + G   C  H +Q
Sbjct: 382 NTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQ 417


>sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase
           component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3
          Length = 653

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 174 NLSILSPYYNGGTLGDMMCRMPFIHGAFRCYMHMIQ 67
           N   L P Y  G L    CRM  + G   C  H +Q
Sbjct: 370 NTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQ 405


>sp|A1WYT6|LPXC_HALHL UDP-3-O-[3-hydroxymyristoyl]
           N-acetylglucosamine deacetylase OS=Halorhodospira
           halophila (strain DSM 244 / SL1) GN=lpxC PE=3 SV=1
          Length = 300

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 142 GNLGGHDVSHAIHPRSVQMLHAHDTTWREVSATKN*HLP 26
           G+  GH   HA++ R ++ L  H+  W EV+  +   LP
Sbjct: 253 GSFHGHKSGHALNNRLLRKLLEHEHAWEEVTFEELDELP 291


>sp|P20393|NR1D1_HUMAN Nuclear receptor subfamily 1 group D member 1
           OS=Homo sapiens GN=NR1D1 PE=1 SV=1
          Length = 614

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = -1

Query: 363 WCMDIIHHQRHFFLSRGHYICRKMLQGRE*GKI**LSDREINANTSLLRCKMHWLYH 193
           W     HH  H   S GH +C   +     GK    S R+ N+   LL C M+   H
Sbjct: 369 WPPGPAHHSCHQSNSNGHRLCPTHVYAAPEGKAPANSPRQGNSKNVLLACPMNMYPH 425


>sp|Q12BZ9|HEMH_POLSJ Ferrochelatase OS=Polaromonas sp. (strain
           JS666 / ATCC BAA-500) GN=hemH PE=3 SV=1
          Length = 367

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +1

Query: 43  WWQIPPAMLYHVHVASERSVDEWHATHHVPQGSPIVVWTQYGKIVIQG 186
           WW I   ++  + +  ++S  ++ A+   P+GSP+ VWTQ   ++++G
Sbjct: 60  WWLILHGII--LRLRPKKSATKY-ASIWTPEGSPLKVWTQKQALMLRG 104
tr_hit_id Q8IQ18
Definition tr|Q8IQ18|Q8IQ18_DROME Dumpy OS=Drosophila melanogaster
Align length 33
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913006|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_D01.
         (462 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8IQ18|Q8IQ18_DROME Dumpy OS=Drosophila melanogaster GN=dp PE...    34   4.1  
tr|B4Q309|B4Q309_DROSI GD22701 OS=Drosophila simulans GN=GD22701...    34   4.1  
tr|B4NYY8|B4NYY8_DROYA GE14706 OS=Drosophila yakuba GN=GE14706 P...    34   4.1  
tr|B4I3A6|B4I3A6_DROSE GM18084 OS=Drosophila sechellia GN=GM1808...    34   4.1  
tr|B3ED12|B3ED12_CHLL2 2-oxoglutarate dehydrogenase, E1 subunit ...    33   5.4  
tr|Q2A0X1|Q2A0X1_9LAMI Phytochrome A (Fragment) OS=Hyobanche rub...    33   7.0  
tr|B4MTX1|B4MTX1_DROWI GK23922 OS=Drosophila willistoni GN=GK239...    33   9.2  

>tr|Q8IQ18|Q8IQ18_DROME Dumpy OS=Drosophila melanogaster GN=dp PE=1 SV=4
          Length = 22971

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = +3

Query: 351   CPYTKRA----CSNPCTFHLPSGPHGECQSNEH 437
             CP  K      C NPC +H P  P  EC++  H
Sbjct: 22061 CPTDKTCQNEQCVNPCVYHNPCAPRAECRAQNH 22093


>tr|B4Q309|B4Q309_DROSI GD22701 OS=Drosophila simulans GN=GD22701 PE=4
            SV=1
          Length = 3703

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = +3

Query: 351  CPYTKRA----CSNPCTFHLPSGPHGECQSNEH 437
            CP  K      C NPC +H P  P  EC++  H
Sbjct: 2793 CPTDKTCQNEQCVNPCVYHNPCAPRAECRAQNH 2825


>tr|B4NYY8|B4NYY8_DROYA GE14706 OS=Drosophila yakuba GN=GE14706 PE=4
            SV=1
          Length = 5806

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = +3

Query: 351  CPYTKRA----CSNPCTFHLPSGPHGECQSNEH 437
            CP  K      C NPC +H P  P  EC++  H
Sbjct: 4896 CPTDKTCQNEQCVNPCVYHNPCAPRAECRAQNH 4928


>tr|B4I3A6|B4I3A6_DROSE GM18084 OS=Drosophila sechellia GN=GM18084 PE=4
             SV=1
          Length = 14551

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = +3

Query: 351   CPYTKRA----CSNPCTFHLPSGPHGECQSNEH 437
             CP  K      C NPC +H P  P  EC++  H
Sbjct: 13641 CPKDKTCQNEQCVNPCVYHNPCAPRAECRAQSH 13673


>tr|B3ED12|B3ED12_CHLL2 2-oxoglutarate dehydrogenase, E1 subunit
            OS=Chlorobium limicola (strain DSM 245 / NBRC 103803)
            GN=Clim_1377 PE=4 SV=1
          Length = 943

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = -1

Query: 390  RCKG*SRLFWCMDIIHHQRHF-FLSRGHYICRKMLQGRE*GKI**LSDREINANTSLLRC 214
            R  G   + WC D   +Q ++ FL   HYI   M+ G++ G     + R  +A+T+    
Sbjct: 866  RYPGLKEIVWCQDEPKNQGYWRFLQ--HYIMNAMIPGQQFG----YAGRPASASTACGYA 919

Query: 213  KMHWLYHRGSLDHNLSILSPYYN 145
             MH L  +  LD      S +YN
Sbjct: 920  AMHALQQQALLDQAYGEFSVFYN 942


>tr|Q2A0X1|Q2A0X1_9LAMI Phytochrome A (Fragment) OS=Hyobanche rubra
           GN=phya PE=4 SV=1
          Length = 618

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
 Frame = -3

Query: 166 HTESILQWGN----LGGHDVSHAIHPRS-----VQMLHAHDTTWRE 56
           HTE+ +QWG     +GG D    +HPRS     ++++ A    WR+
Sbjct: 363 HTEAEVQWGGAKHEMGGEDDDRKMHPRSSFKAFLEVVKARSVPWRD 408


>tr|B4MTX1|B4MTX1_DROWI GK23922 OS=Drosophila willistoni GN=GK23922
            PE=4 SV=1
          Length = 3792

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
 Frame = +3

Query: 351  CPYTKRA----CSNPCTFHLPSGPHGECQSNEH 437
            CP  K      C NPC +H P  P  EC+   H
Sbjct: 2881 CPTDKTCQNEQCVNPCIYHNPCSPRAECRPQNH 2913