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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913008
Clone id YMU001_000025_D03
Library
Length 253
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAAAACTCCATAGCTATGGGTGCTAGCCATGCCCTGTTGAAGCTCCTCTGTTTCTTGTC
TCTTCTAGCTCATGGAATGTCTGCCTCAGATAAATTTAGACAGCCCTCCCGGCATGCACG
AAGGGGCGCAGCGCCAGGTCCCTTTGCCACTTGCAGAACTACACCATACCCACAATTGTG
CTCTCACATTCTCCGCTCTTCATCAGCTTCGCCCACTTCTCCTCTCAATCGGCAGATAGC
CACAGTTTCCTCA
■■Homology search results ■■ -
sp_hit_id Q4P4N1
Definition sp|Q4P4N1|ATG18_USTMA Autophagy-related protein 18 OS=Ustilago maydis
Align length 41
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913008|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_D03.
         (253 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4P4N1|ATG18_USTMA Autophagy-related protein 18 OS=Ustilago m...    30   3.7  
sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein ...    30   4.8  
sp|Q5R8S0|K1967_PONAB Protein KIAA1967 homolog OS=Pongo abelii P...    30   4.8  
sp|Q8N163|K1967_HUMAN Protein KIAA1967 OS=Homo sapiens GN=KIAA19...    30   4.8  
sp|Q8P1F1|PANE_STRP8 Putative 2-dehydropantoate 2-reductase OS=S...    29   6.3  
sp|Q5XCQ0|PANE_STRP6 Putative 2-dehydropantoate 2-reductase OS=S...    29   6.3  
sp|P65667|PANE_STRP3 Putative 2-dehydropantoate 2-reductase OS=S...    29   6.3  
sp|P65666|PANE_STRP1 Putative 2-dehydropantoate 2-reductase OS=S...    29   6.3  
sp|Q4I5G1|COX10_GIBZE Protoheme IX farnesyltransferase, mitochon...    29   6.3  
sp|Q9H8N7|ZN395_HUMAN Zinc finger protein 395 OS=Homo sapiens GN...    29   8.3  
sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein ...    29   8.3  

>sp|Q4P4N1|ATG18_USTMA Autophagy-related protein 18 OS=Ustilago
           maydis GN=ATG18 PE=3 SV=1
          Length = 453

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 131 APGPFATCRTTPYPQLCSHILRSSSASPTSPLNRQIATVSS 253
           +P P A C  +P  + C     S  ASPTSP +   A+ S+
Sbjct: 139 SPNPMAICALSPSSENCFLAYPSPVASPTSPFSNSGASSSA 179


>sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein 2
            OS=Mus musculus GN=Srrm2 PE=1 SV=2
          Length = 2703

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
 Frame = +2

Query: 104  PSRHARRGAAPGPFAT----------CRTTPYPQLCSHILRSSSASPTSP 223
            PSRH+  G++PG   T          C ++P P+      R+ S SP+SP
Sbjct: 1410 PSRHSLSGSSPGMKDTPQTPSRGRSECDSSPEPKALPQTPRARSHSPSSP 1459


>sp|Q5R8S0|K1967_PONAB Protein KIAA1967 homolog OS=Pongo abelii PE=2
           SV=1
          Length = 918

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -2

Query: 156 LQVAKGPGAAPLRACREGCLNLSEADIP*ARRDKKQRSFNRAWLAPIAMEFL 1
           L  A  P   P    R GC+NLS   I   RR K++ SF    LA + +E L
Sbjct: 497 LPEAPPPPLEPAVIARPGCVNLSLHGIVEDRRPKERISFEVMVLAELFLEML 548


>sp|Q8N163|K1967_HUMAN Protein KIAA1967 OS=Homo sapiens GN=KIAA1967
           PE=1 SV=2
          Length = 923

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -2

Query: 156 LQVAKGPGAAPLRACREGCLNLSEADIP*ARRDKKQRSFNRAWLAPIAMEFL 1
           L  A  P   P    R GC+NLS   I   RR K++ SF    LA + +E L
Sbjct: 497 LPEAPPPPLEPAVIARPGCVNLSLHGIVEDRRPKERISFEVMVLAELFLEML 548


>sp|Q8P1F1|PANE_STRP8 Putative 2-dehydropantoate 2-reductase
           OS=Streptococcus pyogenes serotype M18 GN=apbA PE=3 SV=1
          Length = 307

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -2

Query: 252 EETVAICRLRGEVGEADEERR-M*EHNCGYGVVLQVA--KGPGAAPLRACREGCLNLSEA 82
           +ET  +C L G +G  D  R+ + EHN   GV +  A  +GPG A L+    G LNL   
Sbjct: 93  KETKVLCLLNG-LGHEDVIRQYIPEHNILMGVTVWTAGLEGPGRAHLQGV--GALNLQSM 149

Query: 81  D 79
           D
Sbjct: 150 D 150


>sp|Q5XCQ0|PANE_STRP6 Putative 2-dehydropantoate 2-reductase
           OS=Streptococcus pyogenes serotype M6 GN=apbA PE=3 SV=1
          Length = 307

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -2

Query: 252 EETVAICRLRGEVGEADEERR-M*EHNCGYGVVLQVA--KGPGAAPLRACREGCLNLSEA 82
           +ET  +C L G +G  D  R+ + EHN   GV +  A  +GPG A L+    G LNL   
Sbjct: 93  KETKVLCLLNG-LGHEDVIRQYIPEHNILMGVTVWTAGLEGPGRAHLQGV--GALNLQSM 149

Query: 81  D 79
           D
Sbjct: 150 D 150


>sp|P65667|PANE_STRP3 Putative 2-dehydropantoate 2-reductase
           OS=Streptococcus pyogenes serotype M3 GN=apbA PE=3 SV=1
          Length = 307

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -2

Query: 252 EETVAICRLRGEVGEADEERR-M*EHNCGYGVVLQVA--KGPGAAPLRACREGCLNLSEA 82
           +ET  +C L G +G  D  R+ + EHN   GV +  A  +GPG A L+    G LNL   
Sbjct: 93  KETKVLCLLNG-LGHEDVIRQYIPEHNILMGVTVWTAGLEGPGRAHLQGV--GALNLQSM 149

Query: 81  D 79
           D
Sbjct: 150 D 150


>sp|P65666|PANE_STRP1 Putative 2-dehydropantoate 2-reductase
           OS=Streptococcus pyogenes serotype M1 GN=apbA PE=3 SV=1
          Length = 307

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -2

Query: 252 EETVAICRLRGEVGEADEERR-M*EHNCGYGVVLQVA--KGPGAAPLRACREGCLNLSEA 82
           +ET  +C L G +G  D  R+ + EHN   GV +  A  +GPG A L+    G LNL   
Sbjct: 93  KETKVLCLLNG-LGHEDVIRQYIPEHNILMGVTVWTAGLEGPGRAHLQGV--GALNLQSM 149

Query: 81  D 79
           D
Sbjct: 150 D 150


>sp|Q4I5G1|COX10_GIBZE Protoheme IX farnesyltransferase,
           mitochondrial OS=Gibberella zeae GN=COX10 PE=3 SV=1
          Length = 507

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 83  ASDKFRQPSRHARRGAAPGPFATCRTTPYPQLCSHILRSSSASPTSPLNRQIATVSS 253
           A  + RQ  R  +  A     A     P P   S +L + +AS TSPL R ++   S
Sbjct: 104 APHRKRQAQRREKAAAEAAAAAARGEKPLPPDASSLLAAHAASQTSPLRRHLSACLS 160


>sp|Q9H8N7|ZN395_HUMAN Zinc finger protein 395 OS=Homo sapiens
           GN=ZNF395 PE=1 SV=2
          Length = 513

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 74  GMSASD--KFRQPSRHARRGAAPGPFATCRTTPYPQLCSHILRSSSAS 211
           G SAS+      PS     GAAP PF T   TP  +    +L++ S S
Sbjct: 21  GPSASEGPSAAPPSEPLLEGAAPQPFTTSDDTPCQEQPKEVLKAPSTS 68
tr_hit_id Q9FF77
Definition tr|Q9FF77|Q9FF77_ARATH Pectinesterase OS=Arabidopsis thaliana
Align length 40
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913008|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_D03.
         (253 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FF77|Q9FF77_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    36   1.1  
tr|Q9SG78|Q9SG78_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    35   1.4  
tr|Q94CB1|Q94CB1_ARATH Pectinesterase OS=Arabidopsis thaliana GN...    35   1.4  
tr|A8NBT8|A8NBT8_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   2.5  

>tr|Q9FF77|Q9FF77_ARATH Pectinesterase OS=Arabidopsis thaliana
           GN=At5g04970 PE=3 SV=1
          Length = 624

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 104 PSRHARRGAAPGPFATCRTTPYPQLCSHILRSSSASPTSP 223
           PS+   + +   P   C++TPYP+LC  IL +  +SP+ P
Sbjct: 72  PSQSPSQPSPLPPNIACKSTPYPKLCRTILSAVKSSPSDP 111


>tr|Q9SG78|Q9SG78_ARATH Pectinesterase OS=Arabidopsis thaliana
           GN=T7M13.20 PE=3 SV=1
          Length = 617

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 140 PFATCRTTPYPQLCSHILRSSSASPTSP 223
           P   C++TPYP+LC  IL +  +SP+ P
Sbjct: 77  PSLACKSTPYPKLCRTILNAVKSSPSDP 104


>tr|Q94CB1|Q94CB1_ARATH Pectinesterase OS=Arabidopsis thaliana
           GN=At3g10720 PE=2 SV=1
          Length = 619

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 140 PFATCRTTPYPQLCSHILRSSSASPTSP 223
           P   C++TPYP+LC  IL +  +SP+ P
Sbjct: 79  PSLACKSTPYPKLCRTILNAVKSSPSDP 106


>tr|A8NBT8|A8NBT8_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_02548 PE=4
           SV=1
          Length = 428

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = +3

Query: 102 SPPGMHEGAQRQVPLPLAELHHTHNCALTFSALHQLRPLLLSIGR 236
           +PPG + GA    P+P   L  T+  AL FS    L PLL   GR
Sbjct: 246 TPPGSNSGAIVNSPIPTTALLITNLPALLFSQAQDLHPLLCPFGR 290