BP913015
Clone id YMU001_000025_E01
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AGGGGATCAATGCCCTCTGGGGAGGCATGAGCTGGACATTATTGTGCCCAAGCAGCACCC
GCCACAAGGCGTAGGCATAGCGATGAAATGACGATGAAAGGGGGTTGCTTCTTTGATGAC
GACGAAGATGGGGGTGAGCCTCGATTGGAGCGCGTAGAATCAGGAAAGGGTCTCAGAGCC
CAAATCTTTGAGAGCTTGTTAAGTTCTGCCAATGTATCAGGATACTGAAGAGCAATATCA
GAACGGGATTCCAACAATTACTTTATAAACTGCTGATTCCAACAAAATGATCGCCTTGAC
AAAGCTCTGTACATAACTCCGGACAAGGGAGTACATGTAGTTTTGTATACCAGAATGGTT
TACCAGACTATGCAGTTTTTAACATCTTGGGTTTATAATGAAATTTGCATATAGGTTTGG
GATAGGGGTATGTTATGGTATGGTAAACCATAAATGGTTTACTCATGTCGGAGAGATAGG
CTAAGAAGCCATGTATTGAGCTTTAGCTTTTGGAGGAGCAAGTATGTAACATG
■■Homology search results ■■ -
sp_hit_id Q6UXM1
Definition sp|Q6UXM1|LRIG3_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 3 OS=Homo sapiens
Align length 56
Score (bit) 31.2
E-value 3.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913015|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_E01.
(533 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6UXM1|LRIG3_HUMAN Leucine-rich repeats and immunoglobulin-li... 31 3.3
sp|Q6L4N4|C3H35_ORYSJ Zinc finger CCCH domain-containing protein... 31 3.3

>sp|Q6UXM1|LRIG3_HUMAN Leucine-rich repeats and immunoglobulin-like
domains protein 3 OS=Homo sapiens GN=LRIG3 PE=2 SV=1
Length = 1119

Score = 31.2 bits (69), Expect = 3.3
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = -2

Query: 463 SKPFMVYHTITYPYPKPICKFHYKPKMLKTA*SGKPFWYTKLHVLPCPELCTELCQ 296
S PF YHT P P+ + HY+P +K K PC E C+
Sbjct: 938 SDPFETYHTGCSPDPRTVLMDHYEPSYIK-----------KKECYPCSHPSEESCE 982


>sp|Q6L4N4|C3H35_ORYSJ Zinc finger CCCH domain-containing protein 35
OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2
SV=1
Length = 402

Score = 31.2 bits (69), Expect = 3.3
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1

Query: 145 LERVESGKGLRAQIFESLLSSANVS 219
+ERVESG+ LR ++FE L A VS
Sbjct: 356 MERVESGRALREKVFERLSKEATVS 380


tr_hit_id Q4S7Q2
Definition tr|Q4S7Q2|Q4S7Q2_TETNG Chromosome 18 SCAF14712, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 70
Score (bit) 35.4
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913015|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_E01.
(533 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4S7Q2|Q4S7Q2_TETNG Chromosome 18 SCAF14712, whole genome sho... 35 1.8
tr|Q4RW99|Q4RW99_TETNG Chromosome 9 SCAF14991, whole genome shot... 33 9.2

>tr|Q4S7Q2|Q4S7Q2_TETNG Chromosome 18 SCAF14712, whole genome
shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00022682001 PE=4 SV=1
Length = 243

Score = 35.4 bits (80), Expect = 1.8
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = -2

Query: 478 YLSDMSKPFMVYHTITYPYPKPICKFHYKPKMLKTA*SGKPFWYTKLHV-----LPCPEL 314
YL +S ++T+T P P P C++ + + G F ++ H LPC L
Sbjct: 75 YLKMLSHLRPHWYTVTQPGPLPPCRYKTVNSEQEPSRGGASFQFSPFHFASTLFLPCDLL 134

Query: 313 CTELCQGDHF 284
C LCQ F
Sbjct: 135 CRHLCQVGDF 144


>tr|Q4RW99|Q4RW99_TETNG Chromosome 9 SCAF14991, whole genome shotgun
sequence. (Fragment) OS=Tetraodon nigroviridis
GN=GSTENG00027960001 PE=4 SV=1
Length = 1019

Score = 33.1 bits (74), Expect = 9.2
Identities = 24/73 (32%), Positives = 34/73 (46%)
Frame = -2

Query: 226 SILIHWQNLTSSQRFGL*DPFLILRAPIEAHPHLRRHQRSNPLSSSFHRYAYALWRVLLG 47
S L + +L SQ F P ++++AP H R N L SF R +L R+ L
Sbjct: 666 SALTNLHHLDLSQNFITFLPHIVIQAPASFLLLDLSHNRINYLPQSFFRAMNSLRRLYLS 725

Query: 46 HNNVQLMPPQRAL 8
HN ++ Q AL
Sbjct: 726 HNQLKQFDHQLAL 738