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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913018
Clone id YMU001_000025_E04
Library
Length 582
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000025_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGAGGCACTGGTGCATGGTGCAAACATTGCAGCCTTCTTACAACTTGCGGAGGCTATGCA
AGAGCAGGGAGTTGTCTAGCTCAGATTGAACTGGATTACCATTCTATCTATTTATAAGGT
TTCGCTGGCAATGAAGCTGAAGCCCATACCTGACGTTCTGTCGATGATGCACGTATAAGA
CGTGAGCGCTATCACACGCAGATCACTTCCTCGACCCAAAGTCCAGAGTATCAAAGGGAG
TTGCGGTTTGCTCAATGACCGGGCTTTTCTACTCTTCAATTACAGGCCCGGCCCATCAGT
TGGACCTTGGAAGGCCAAGTATGCGTTTCTACGAATGGAAAATGTATCATTGTGTAAGCA
TTCTTTAGTTGAGTGGTTGTATGTTAAAAGAAGAGGAGAGGTTGGTTTGTGTCAGTGCTG
CCTAGACACAGTCTAACCTGTTTCAACTTAGCTAACATCTTTCACTTTTGCCCATTTTGG
GGTGGCTGTGAATAATGCACAAGGATGTTCAAATCAGTATGTGAAGCTTGCTCTGCAGAA
GGTCAGCAGCTCTTTGTAAATTACAAAGGTTCTATATATTGT
■■Homology search results ■■ -
sp_hit_id P14657
Definition sp|P14657|DHE4_UNKP NADP-specific glutamate dehydrogenase OS=Unknown prokaryotic organism
Align length 22
Score (bit) 33.9
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913018|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_E04.
         (582 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P14657|DHE4_UNKP NADP-specific glutamate dehydrogenase OS=Unk...    34   0.60 
sp|Q7V4G6|Y1986_PROMM UPF0367 protein PMT1986 OS=Prochlorococcus...    32   3.0  
sp|P54387|DHE4_AGABI NADP-specific glutamate dehydrogenase OS=Ag...    31   3.9  
sp|P39708|DHE5_YEAST NADP-specific glutamate dehydrogenase 2 OS=...    31   5.1  
sp|Q96VJ7|DHE4_GIBFU NADP-specific glutamate dehydrogenase OS=Gi...    31   5.1  
sp|P15111|DHE4_SALTY NADP-specific glutamate dehydrogenase OS=Sa...    30   6.7  
sp|Q8Z6F6|DHE4_SALTI NADP-specific glutamate dehydrogenase OS=Sa...    30   6.7  
sp|P18819|DHE4_EMENI NADP-specific glutamate dehydrogenase OS=Em...    30   6.7  
sp|P00370|DHE4_ECOLI NADP-specific glutamate dehydrogenase OS=Es...    30   6.7  
sp|P94598|DHE3_BACTN Glutamate dehydrogenase OS=Bacteroides thet...    30   6.7  
sp|Q9V411|NOG1_DROME Probable nucleolar GTP-binding protein 1 OS...    30   8.7  
sp|P07262|DHE4_YEAST NADP-specific glutamate dehydrogenase 1 OS=...    30   8.7  
sp|Q8TFF6|DHE4_SACBA NADP-specific glutamate dehydrogenase 1 OS=...    30   8.7  
sp|P29507|DHE4_DEBOC NADP-specific glutamate dehydrogenase OS=De...    30   8.7  

>sp|P14657|DHE4_UNKP NADP-specific glutamate dehydrogenase
           OS=Unknown prokaryotic organism GN=gdhA PE=3 SV=1
          Length = 446

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +2

Query: 11  VHGANIAAFLQLAEAMQEQGVV 76
           VHGANIA F+++AEAM  QGV+
Sbjct: 425 VHGANIAGFVKVAEAMLAQGVL 446


>sp|Q7V4G6|Y1986_PROMM UPF0367 protein PMT1986 OS=Prochlorococcus
           marinus (strain MIT 9313) GN=PMT1986 PE=3 SV=1
          Length = 100

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +2

Query: 95  ITILSIYKVSLAMKLKPIPDVLSMMHV*DVSAI---TRRSLPRPKVQSIKGSCGLLNDR 262
           ++ LS+Y + LA+KL P+P  +    + D  A+    R+ L R +   ++ SC  + D+
Sbjct: 9   LSTLSVYVIELALKLSPLPVSVQRKALTDAEAVYQQVRKCLERGQPHLLELSCEKVEDK 67


>sp|P54387|DHE4_AGABI NADP-specific glutamate dehydrogenase
           OS=Agaricus bisporus GN=gdhA PE=3 SV=1
          Length = 457

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 12/22 (54%), Positives = 20/22 (90%)
 Frame = +2

Query: 5   ALVHGANIAAFLQLAEAMQEQG 70
           +L+ GAN+A F+++A+AM+EQG
Sbjct: 433 SLLSGANLAGFIKVADAMKEQG 454


>sp|P39708|DHE5_YEAST NADP-specific glutamate dehydrogenase 2
           OS=Saccharomyces cerevisiae GN=GDH3 PE=1 SV=1
          Length = 457

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 5   ALVHGANIAAFLQLAEAMQEQGVV 76
           +LV GANIA+F+ +A+AM +QG V
Sbjct: 433 SLVKGANIASFVMVADAMLDQGDV 456


>sp|Q96VJ7|DHE4_GIBFU NADP-specific glutamate dehydrogenase
           OS=Gibberella fujikuroi GN=GDH2 PE=3 SV=1
          Length = 451

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = +2

Query: 5   ALVHGANIAAFLQLAEAMQEQG 70
           +L+ G+NIA F+++AEAM +QG
Sbjct: 427 SLIAGSNIAGFIKVAEAMHDQG 448


>sp|P15111|DHE4_SALTY NADP-specific glutamate dehydrogenase
           OS=Salmonella typhimurium GN=gdhA PE=3 SV=2
          Length = 447

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +2

Query: 11  VHGANIAAFLQLAEAMQEQGVV 76
           V GANIA F+++A+AM  QGV+
Sbjct: 426 VQGANIAGFVKVADAMLAQGVI 447


>sp|Q8Z6F6|DHE4_SALTI NADP-specific glutamate dehydrogenase
           OS=Salmonella typhi GN=gdhA PE=3 SV=1
          Length = 447

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +2

Query: 11  VHGANIAAFLQLAEAMQEQGVV 76
           V GANIA F+++A+AM  QGV+
Sbjct: 426 VQGANIAGFVKVADAMLAQGVI 447


>sp|P18819|DHE4_EMENI NADP-specific glutamate dehydrogenase
           OS=Emericella nidulans GN=gdhA PE=3 SV=1
          Length = 459

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +2

Query: 5   ALVHGANIAAFLQLAEAMQEQG 70
           +LV G+NIA F ++AEAM++QG
Sbjct: 435 SLVTGSNIAGFTKVAEAMKDQG 456


>sp|P00370|DHE4_ECOLI NADP-specific glutamate dehydrogenase
           OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1
          Length = 447

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +2

Query: 11  VHGANIAAFLQLAEAMQEQGVV 76
           V GANIA F+++A+AM  QGV+
Sbjct: 426 VQGANIAGFVKVADAMLAQGVI 447


>sp|P94598|DHE3_BACTN Glutamate dehydrogenase OS=Bacteroides
           thetaiotaomicron GN=gdhA PE=3 SV=2
          Length = 444

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 11  VHGANIAAFLQLAEAMQEQGVV 76
           V GAN+A F+++A+AM  QG+V
Sbjct: 423 VKGANVAGFMKVAKAMMAQGIV 444
tr_hit_id A9RXU2
Definition tr|A9RXU2|A9RXU2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 25
Score (bit) 39.7
E-value 0.12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913018|Adiantum capillus-veneris mRNA, clone:
YMU001_000025_E04.
         (582 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RXU2|A9RXU2_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.12 
tr|A9RTS6|A9RTS6_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.12 
tr|Q5JKR7|Q5JKR7_ORYSJ Putative NADP-specific glutamate dehydrog...    39   0.27 
tr|B8AA37|B8AA37_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.27 
tr|A6N065|A6N065_ORYSI NADP-specific glutamate dehydrogenase (Fr...    39   0.27 
tr|Q9C8I0|Q9C8I0_ARATH NADP-specific glutatamate dehydrogenase, ...    38   0.47 
tr|A9RG07|A9RG07_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.4  
tr|A7P6U7|A7P6U7_VITVI Chromosome chr9 scaffold_7, whole genome ...    35   3.0  
tr|A5APE2|A5APE2_VITVI Putative uncharacterized protein OS=Vitis...    35   3.0  
tr|A5N1R2|A5N1R2_CLOK5 Gdh OS=Clostridium kluyveri (strain ATCC ...    34   5.2  
tr|A5D6B0|A5D6B0_PELTS Glutamate dehydrogenase/leucine dehydroge...    34   5.2  
tr|A1JSP8|A1JSP8_YERE8 NADP-specific glutamate dehydrogenase OS=...    34   5.2  
tr|B3T5T5|B3T5T5_9ZZZZ Putative glutamate/leucine/phenylalanine/...    34   6.8  
tr|Q1WSM5|Q1WSM5_LACS1 NADP-specific glutamate dehydrogenase OS=...    34   6.8  
tr|A6P2J2|A6P2J2_9BACE Putative uncharacterized protein OS=Bacte...    34   6.9  
tr|Q24MK0|Q24MK0_DESHY Putative uncharacterized protein OS=Desul...    33   8.8  
tr|A9BJ14|A9BJ14_PETMO Glutamate dehydrogenase (NADP(+)) OS=Petr...    33   8.8  
tr|B8G0B1|B8G0B1_DESHD Glutamate dehydrogenase (NADP(+)) OS=Desu...    33   8.8  
tr|A7J674|A7J674_PBCVF Putative uncharacterized protein N020L OS...    33   9.0  

>tr|A9RXU2|A9RXU2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_179243 PE=3 SV=1
          Length = 572

 Score = 39.7 bits (91), Expect = 0.12
 Identities = 18/25 (72%), Positives = 23/25 (92%)
 Frame = +2

Query: 2   EALVHGANIAAFLQLAEAMQEQGVV 76
           EAL+HGANIA+FL++A+AM EQG V
Sbjct: 548 EALLHGANIASFLRVAQAMLEQGCV 572


>tr|A9RTS6|A9RTS6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_70453 PE=3 SV=1
          Length = 578

 Score = 39.7 bits (91), Expect = 0.12
 Identities = 18/25 (72%), Positives = 23/25 (92%)
 Frame = +2

Query: 2   EALVHGANIAAFLQLAEAMQEQGVV 76
           EAL+HGANIA+FL++A+AM EQG V
Sbjct: 554 EALLHGANIASFLRVAQAMLEQGCV 578


>tr|Q5JKR7|Q5JKR7_ORYSJ Putative NADP-specific glutamate
           dehydrogenase (NADP-GDH) (NADP-dependent glutamate
           dehydrogenase) (Os01g0558200 protein) OS=Oryza sativa
           subsp. japonica GN=B1064G04.5 PE=3 SV=1
          Length = 640

 Score = 38.5 bits (88), Expect = 0.27
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +2

Query: 2   EALVHGANIAAFLQLAEAMQEQGVV 76
           E+LVHGANI AFL +A+AM +QG V
Sbjct: 616 ESLVHGANICAFLNIAQAMTDQGCV 640


>tr|B8AA37|B8AA37_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02416 PE=4 SV=1
          Length = 556

 Score = 38.5 bits (88), Expect = 0.27
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +2

Query: 2   EALVHGANIAAFLQLAEAMQEQGVV 76
           E+LVHGANI AFL +A+AM +QG V
Sbjct: 532 ESLVHGANICAFLNIAQAMTDQGCV 556


>tr|A6N065|A6N065_ORYSI NADP-specific glutamate dehydrogenase
           (Fragment) OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 166

 Score = 38.5 bits (88), Expect = 0.27
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +2

Query: 2   EALVHGANIAAFLQLAEAMQEQGVV 76
           E+LVHGANI AFL +A+AM +QG V
Sbjct: 142 ESLVHGANICAFLNIAQAMTDQGCV 166


>tr|Q9C8I0|Q9C8I0_ARATH NADP-specific glutatamate dehydrogenase,
           putative OS=Arabidopsis thaliana GN=F19C24.7 PE=3 SV=1
          Length = 624

 Score = 37.7 bits (86), Expect = 0.47
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +2

Query: 2   EALVHGANIAAFLQLAEAMQEQGVV 76
           EAL+HGA IAAFL +A+AM +QG V
Sbjct: 600 EALLHGATIAAFLNIAQAMTDQGCV 624


>tr|A9RG07|A9RG07_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_113728 PE=3 SV=1
          Length = 579

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +2

Query: 2   EALVHGANIAAFLQLAEAMQEQGVV 76
           EAL+ GANIA+FL++A+AM EQG V
Sbjct: 555 EALLDGANIASFLRVAQAMLEQGCV 579


>tr|A7P6U7|A7P6U7_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034207001
           PE=3 SV=1
          Length = 449

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +2

Query: 2   EALVHGANIAAFLQLAEAMQEQGVV 76
           EALVHGA I+AFL +A+ M +QG V
Sbjct: 425 EALVHGAAISAFLTIAQGMTDQGCV 449


>tr|A5APE2|A5APE2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043645 PE=4 SV=1
          Length = 638

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +2

Query: 2   EALVHGANIAAFLQLAEAMQEQGVV 76
           EALVHGA I+AFL +A+ M +QG V
Sbjct: 614 EALVHGAAISAFLTIAQGMTDQGCV 638


>tr|A5N1R2|A5N1R2_CLOK5 Gdh OS=Clostridium kluyveri (strain ATCC
           8527 / DSM 555 / NCIMB 10680) GN=gdh PE=3 SV=1
          Length = 443

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +2

Query: 17  GANIAAFLQLAEAMQEQGVV 76
           GANIA FL++AEAM EQG+V
Sbjct: 424 GANIAGFLKVAEAMMEQGIV 443